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sequence-representative

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Sequence representative lists are generated by first computing BLAST scores for all pairs of structures. The pairs which score above a certain threshold (Sequence identity30% and E-value0.1) arelinked. The set is first clustered using single-linkage clustering. Then, these clusters are partitioned by the following iterative procedure:

1. The structure with the greatest number of links is chosen, and a new cluster defined with it as the representative and all of its links members.

2. The representative and all its members are removed and step 1 is repeated until there are no members left.


Created: 2012-07-13 (last edited: more than 1 year ago)2014-08-12

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