PDB: 696 resultsInfo pagesStatus searchChemie searchBIRD

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7ML4	RNA polymerase II initially transcribing complex (ITC) Descriptor: BJ4_G0050160.mRNA.1.CDS.1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Yang, C, Fujiwara, R, Kim, H.J, Gorbea Colon, J.J, Steimle, S, Garcia, B.A, Murakami, K. Deposit date: 2021-04-27 Release date: 2022-02-02 Last modified: 2022-03-09 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II. Mol.Cell, 82, 2022
7ML1	RNA polymerase II pre-initiation complex (PIC2) Descriptor: BJ4_G0050160.mRNA.1.CDS.1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Yang, C, Fujiwara, R, Kim, H.J, Gorbea Colon, J.J, Steimle, S, Garcia, B.A, Murakami, K. Deposit date: 2021-04-27 Release date: 2022-02-02 Last modified: 2022-02-16 Method: ELECTRON MICROSCOPY (4 Å) Cite: Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II. Mol.Cell, 82, 2022
7ML0	RNA polymerase II pre-initiation complex (PIC1) Descriptor: BJ4_G0050160.mRNA.1.CDS.1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Yang, C, Fujiwara, R, Kim, H.J, Gorbea Colon, J.J, Steimle, S, Garcia, B.A, Murakami, K. Deposit date: 2021-04-27 Release date: 2022-02-02 Last modified: 2022-02-16 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II. Mol.Cell, 82, 2022
7ML2	RNA polymerase II pre-initiation complex (PIC3) Descriptor: BJ4_G0004860.mRNA.1.CDS.1, BJ4_G0050160.mRNA.1.CDS.1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Yang, C, Fujiwara, R, Kim, H.J, Gorbea Colon, J.J, Steimle, S, Garcia, B.A, Murakami, K. Deposit date: 2021-04-27 Release date: 2022-02-02 Last modified: 2022-02-16 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structural visualization of de novo transcription initiation by Saccharomyces cerevisiae RNA polymerase II. Mol.Cell, 82, 2022
8CEO	Yeast RNA polymerase II transcription pre-initiation complex with core Mediator and the +1 nucleosome Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Wang, H, Cramer, P. Deposit date: 2023-02-02 Release date: 2023-03-08 Last modified: 2023-04-19 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Yeast PIC-Mediator structure with RNA polymerase II C-terminal domain. Proc.Natl.Acad.Sci.USA, 120, 2023
6GYM	Structure of a yeast closed complex with distorted DNA (CCdist) Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Dienemann, C, Schwalb, B, Schilbach, S, Cramer, P. Deposit date: 2018-06-30 Release date: 2018-12-05 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (6.7 Å) Cite: Promoter Distortion and Opening in the RNA Polymerase II Cleft. Mol. Cell, 73, 2019
6I9P	Iron-free state of Rana catesbeiana H' ferritin variant H54N Descriptor: CHLORIDE ION, Ferritin, middle subunit, ... Authors: Pozzi, C, Di Pisa, F, Mangani, S. Deposit date: 2018-11-24 Release date: 2019-05-22 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.25 Å) Cite: Effect of the point mutation H54N on the ferroxidase process of Rana catesbeiana H' ferritin. J.Inorg.Biochem., 197, 2019
4V6X	Structure of the human 80S ribosome Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... Authors: Anger, A.M, Armache, J.-P, Berninghausen, O, Habeck, M, Subklewe, M, Wilson, D.N, Beckmann, R. Deposit date: 2013-02-27 Release date: 2014-07-09 Last modified: 2023-02-01 Method: ELECTRON MICROSCOPY (5 Å) Cite: Structures of the human and Drosophila 80S ribosome. Nature, 497, 2013
4JPY	Iron and phenylalanine bound crystal structure of phenylalanine hydroxylase from Chromobacterium violaceum Descriptor: FE (III) ION, PHENYLALANINE, Phenylalanine-4-hydroxylase Authors: Ronau, J.A, Abu-Omar, M.M, Das, C. Deposit date: 2013-03-19 Release date: 2013-08-07 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.13 Å) Cite: An additional substrate binding site in a bacterial phenylalanine hydroxylase. Eur.Biophys.J., 42, 2013
7NW0	RNA polymerase II pre-initiation complex with open promoter DNA Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, CDK-activating kinase assembly factor MAT1, ... Authors: Aibara, S, Schilbach, S, Cramer, P. Deposit date: 2021-03-16 Release date: 2021-05-05 Last modified: 2021-06-16 Method: ELECTRON MICROSCOPY (6.6 Å) Cite: Structures of mammalian RNA polymerase II pre-initiation complexes. Nature, 594, 2021
8WAO	Structure of transcribing complex 5 (TC5), the initially transcribing complex with Pol II positioned 5nt downstream of TSS. Descriptor: Alpha-amanitin, CDK-activating kinase assembly factor MAT1, DNA-directed RNA polymerase II subunit E, ... Authors: Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. Deposit date: 2023-09-07 Release date: 2023-12-06 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (6.4 Å) Cite: Structural visualization of transcription initiation in action. Science, 382, 2023
8WAK	Structure of transcribing complex 2 (TC2), the initially transcribing complex with Pol II positioned 2nt downstream of TSS. Descriptor: Alpha-amanitin, CDK-activating kinase assembly factor MAT1, DNA-directed RNA polymerase II subunit E, ... Authors: Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. Deposit date: 2023-09-07 Release date: 2023-12-06 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (5.47 Å) Cite: Structural visualization of transcription initiation in action. Science, 382, 2023
8WAS	Structure of transcribing complex 9 (TC9), the initially transcribing complex with Pol II positioned 9nt downstream of TSS. Descriptor: Alpha-amanitin, CDK-activating kinase assembly factor MAT1, DNA-directed RNA polymerase II subunit E, ... Authors: Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. Deposit date: 2023-09-08 Release date: 2023-12-06 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (6.13 Å) Cite: Structural visualization of transcription initiation in action. Science, 382, 2023
8WAL	Structure of transcribing complex 3 (TC3), the initially transcribing complex with Pol II positioned 3nt downstream of TSS. Descriptor: Alpha-amanitin, CDK-activating kinase assembly factor MAT1, DNA-directed RNA polymerase II subunit E, ... Authors: Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. Deposit date: 2023-09-07 Release date: 2023-12-06 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (8.52 Å) Cite: Structural visualization of transcription initiation in action. Science, 382, 2023
8WAN	Structure of transcribing complex 4 (TC4), the initially transcribing complex with Pol II positioned 4nt downstream of TSS. Descriptor: Alpha-amanitin, CDK-activating kinase assembly factor MAT1, DNA-directed RNA polymerase II subunit E, ... Authors: Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. Deposit date: 2023-09-07 Release date: 2023-12-06 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (6.07 Å) Cite: Structural visualization of transcription initiation in action. Science, 382, 2023
8WAQ	Structure of transcribing complex 7 (TC7), the initially transcribing complex with Pol II positioned 7nt downstream of TSS. Descriptor: Alpha-amanitin, CDK-activating kinase assembly factor MAT1, DNA-directed RNA polymerase II subunit E, ... Authors: Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. Deposit date: 2023-09-08 Release date: 2023-12-06 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (6.29 Å) Cite: Structural visualization of transcription initiation in action. Science, 382, 2023
8WAP	Structure of transcribing complex 6 (TC6), the initially transcribing complex with Pol II positioned 6nt downstream of TSS. Descriptor: Alpha-amanitin, CDK-activating kinase assembly factor MAT1, DNA-directed RNA polymerase II subunit E, ... Authors: Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. Deposit date: 2023-09-08 Release date: 2023-12-06 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (5.85 Å) Cite: Structural visualization of transcription initiation in action. Science, 382, 2023
8WAR	Structure of transcribing complex 8 (TC8), the initially transcribing complex with Pol II positioned 8nt downstream of TSS. Descriptor: Alpha-amanitin, CDK-activating kinase assembly factor MAT1, DNA-directed RNA polymerase II subunit E, ... Authors: Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. Deposit date: 2023-09-08 Release date: 2023-12-06 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (7.2 Å) Cite: Structural visualization of transcription initiation in action. Science, 382, 2023
8EBS	Initial DNA-lesion (Cy5) binding by XPC and TFIIH Descriptor: CALCIUM ION, Centrin-2, DNA, ... Authors: Kim, J, Yang, W. Deposit date: 2022-08-31 Release date: 2023-04-19 Last modified: 2023-05-17 Method: ELECTRON MICROSCOPY (4 Å) Cite: Lesion recognition by XPC, TFIIH and XPA in DNA excision repair. Nature, 617, 2023
8EBW	Initial DNA-lesion (AP) binding by XPC and TFIIH complex2 Descriptor: CALCIUM ION, Centrin-2, DNA, ... Authors: Kim, J, Yang, W. Deposit date: 2022-08-31 Release date: 2023-04-19 Last modified: 2023-05-17 Method: ELECTRON MICROSCOPY (5.6 Å) Cite: Lesion recognition by XPC, TFIIH and XPA in DNA excision repair. Nature, 617, 2023
8EBV	Initial DNA-lesion (AP) binding by XPC and TFIIH complex 1 Descriptor: CALCIUM ION, Centrin-2, DNA, ... Authors: Kim, J, Yang, W. Deposit date: 2022-08-31 Release date: 2023-04-19 Last modified: 2023-05-17 Method: ELECTRON MICROSCOPY (7.1 Å) Cite: Lesion recognition by XPC, TFIIH and XPA in DNA excision repair. Nature, 617, 2023
8GBK	Dri1 hemoprotein variant H79A-R90A with a zinc-mirror heme site Descriptor: HEME B/C, Ssr1698 protein Authors: Yee, E.F, Blaby-Haas, C. Deposit date: 2023-02-26 Release date: 2024-04-24 Method: X-RAY DIFFRACTION (2.9 Å) Cite: A hemoprotein with a zinc-mirror heme site ties heme availability to carbon metabolism in cyanobacteria. Nat Commun, 15, 2024
4ETS	Crystal structure of Campylobacter jejuni ferric uptake regulator Descriptor: CHLORIDE ION, Ferric uptake regulation protein, ZINC ION Authors: Sarvan, S, Brunzelle, J.B, Couture, J.-F. Deposit date: 2012-04-24 Release date: 2012-06-20 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structure and regulon of Campylobacter jejuni ferric uptake regulator Fur define apo-Fur regulation. Proc.Natl.Acad.Sci.USA, 109, 2012
8FM6	Dri1 hemoprotein variant H21A with a zinc-mirror heme site Descriptor: HEME B/C, Ssr1698 protein Authors: Yee, E.F, Blaby-Haas, C. Deposit date: 2022-12-22 Release date: 2024-04-24 Method: X-RAY DIFFRACTION (2.85 Å) Cite: A hemoprotein with a zinc-mirror heme site ties heme availability to carbon metabolism in cyanobacteria. Nat Commun, 15, 2024
5K52	Crystal structures of aldehyde deformylating oxygenase from Limnothrix sp. KNUA012 Descriptor: Aldehyde decarbonylase, octadecanal Authors: Park, A.K, Kim, H-.W. Deposit date: 2016-05-23 Release date: 2017-03-15 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal structures of aldehyde deformylating oxygenase from Limnothrix sp. KNUA012 and Oscillatoria sp. KNUA011. Biochem. Biophys. Res. Commun., 477, 2016

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