Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2OL9
DownloadVisualize
BU of 2ol9 by Molmil
Peptide corresponding to residues 170-175 of human prion
Descriptor: peptide from human prion
Authors:Apostol, M.A, Sawaya, M.R, Eisenberg, D.
Deposit date:2007-01-18
Release date:2007-01-30
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (0.85 Å)
Cite:Atomic structures of amyloid cross-beta spines reveal varied steric zippers.
Nature, 447, 2007
1PJX
DownloadVisualize
BU of 1pjx by Molmil
0.85 ANGSTROM STRUCTURE OF SQUID GANGLION DFPASE
Descriptor: 1,2-DIMETHOXYETHANE, 1,2-ETHANEDIOL, 1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE, ...
Authors:Koepke, J, Rueterjans, H, Luecke, C, Fritzsch, G.
Deposit date:2003-06-04
Release date:2004-06-08
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (0.85 Å)
Cite:Statistical analysis of crystallographic data obtained from squid ganglion DFPase at 0.85 A resolution.
Acta Crystallogr.,Sect.D, 59, 2003
5JQF
DownloadVisualize
BU of 5jqf by Molmil
Crystal structure of the lasso peptide Sphingopyxin I (SpI)
Descriptor: Sphingopyxin I
Authors:Fage, C.D, Hegemann, J.D, Harms, K, Bange, G, Marahiel, M.A.
Deposit date:2016-05-04
Release date:2016-09-14
Last modified:2021-06-16
Method:X-RAY DIFFRACTION (0.85 Å)
Cite:Structure and Mechanism of the Sphingopyxin I Lasso Peptide Isopeptidase.
Angew. Chem. Int. Ed. Engl., 55, 2016
3PYP
DownloadVisualize
BU of 3pyp by Molmil
PHOTOACTIVE YELLOW PROTEIN, CRYOTRAPPED EARLY LIGHT CYCLE INTERMEDIATE
Descriptor: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN
Authors:Genick, U.K, Soltis, S.M, Kuhn, P, Canestrelli, I.L, Getzoff, E.D.
Deposit date:1998-07-28
Release date:1999-06-01
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (0.85 Å)
Cite:Structure at 0.85 A resolution of an early protein photocycle intermediate.
Nature, 392, 1998
5RDH
DownloadVisualize
BU of 5rdh by Molmil
PanDDA analysis group deposition -- Endothiapepsin ground state model 39
Descriptor: Endothiapepsin
Authors:Weiss, M.S, Wollenhaupt, J, Metz, A, Barthel, T, Lima, G.M.A, Heine, A, Mueller, U, Klebe, G.
Deposit date:2020-03-24
Release date:2020-06-03
Last modified:2020-06-17
Method:X-RAY DIFFRACTION (0.85 Å)
Cite:F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries for Crystallographic Fragment Screening.
Structure, 28, 2020
4IGS
DownloadVisualize
BU of 4igs by Molmil
Crystal structure of human Aldose Reductase complexed with NADP+ and JF0064
Descriptor: 2,2',3,3',5,5',6,6'-octafluorobiphenyl-4,4'-diol, Aldose reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Cousido-Siah, A, Ruiz, F.X, Mitschler, A, Porte, S, de Lera, A.R, Martin, M.J, de la Fuente, J.A, Klebe, G, Farres, J, Pares, X, Podjarny, A.
Deposit date:2012-12-18
Release date:2014-03-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (0.85 Å)
Cite:Identification of a novel polyfluorinated compound as a lead to inhibit the human enzymes aldose reductase and AKR1B10: structure determination of both ternary complexes and implications for drug design.
Acta Crystallogr.,Sect.D, 70, 2014
1PQ5
DownloadVisualize
BU of 1pq5 by Molmil
Trypsin at pH 5, 0.85 A
Descriptor: ARGININE, SULFATE ION, Trypsin
Authors:Schmidt, A, Jelsch, C, Rypniewski, W, Lamzin, V.S.
Deposit date:2003-06-18
Release date:2003-11-11
Last modified:2017-10-11
Method:X-RAY DIFFRACTION (0.85 Å)
Cite:Trypsin Revisited: CRYSTALLOGRAPHY AT (SUB) ATOMIC RESOLUTION AND QUANTUM CHEMISTRY REVEALING DETAILS OF CATALYSIS.
J.Biol.Chem., 278, 2003
4PTH
DownloadVisualize
BU of 4pth by Molmil
Ensemble model for Escherichia coli dihydrofolate reductase at 100K
Descriptor: Dihydrofolate reductase, FOLIC ACID, MANGANESE (II) ION, ...
Authors:Keedy, D.A, van den Bedem, H, Sivak, D.A, Petsko, G.A, Ringe, D, Wilson, M.A, Fraser, J.S.
Deposit date:2014-03-10
Release date:2014-05-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (0.85 Å)
Cite:Crystal Cryocooling Distorts Conformational Heterogeneity in a Model Michaelis Complex of DHFR.
Structure, 22, 2014
2PF8
DownloadVisualize
BU of 2pf8 by Molmil
Complex of Aldose Reductase with NADP+ and simaltaneously bound competetive inhibitors Fidarestat and IDD594. Concentration of Fidarestat in soaking solution is equal to concentration of IDD594.
Descriptor: (2S,4S)-2-AMINOFORMYL-6-FLUORO-SPIRO[CHROMAN-4,4'-IMIDAZOLIDINE]-2',5'-DIONE, Aldose reductase, CHLORIDE ION, ...
Authors:Petrova, T, Hazemann, I, Cousido, A, Mitschler, A, Ginell, S, Joachimiak, A, Podjarny, A.
Deposit date:2007-04-04
Release date:2007-04-17
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (0.85 Å)
Cite:Crystal packing modifies ligand binding affinity: The case of aldose reductase.
Proteins, 80, 2012
2PFH
DownloadVisualize
BU of 2pfh by Molmil
Complex of Aldose Reductase with NADP+ and simaltaneously bound competetive inhibitors Fidarestat and IDD594. Concentration of Fidarestat in soaking solution is less than concentration of IDD594.
Descriptor: (2S,4S)-2-AMINOFORMYL-6-FLUORO-SPIRO[CHROMAN-4,4'-IMIDAZOLIDINE]-2',5'-DIONE, Aldose reductase, CHLORIDE ION, ...
Authors:Petrova, T, Hazemann, I, Cousido, A, Mitschler, A, Ginell, S, Joachimiak, A, Podjarny, A.
Deposit date:2007-04-05
Release date:2007-04-17
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (0.85 Å)
Cite:Crystal packing modifies ligand binding affinity: The case of aldose reductase.
Proteins, 80, 2012
6KL1
DownloadVisualize
BU of 6kl1 by Molmil
Crystal structure of the S65T/F99S/M153T/V163A variant of non-deuterated GFP at pD 8.5
Descriptor: Green fluorescent protein
Authors:Tai, Y, Takaba, K, Hanazono, Y, Dao, H.A, Miki, K, Takeda, K.
Deposit date:2019-07-28
Release date:2019-12-11
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (0.851 Å)
Cite:X-ray crystallographic studies on the hydrogen isotope effects of green fluorescent protein at sub-angstrom resolutions
Acta Crystallogr.,Sect.D, 75, 2019
6Q01
DownloadVisualize
BU of 6q01 by Molmil
TDP2 UBA Domain Bound to Ubiquitin at 0.85 Angstroms Resolution, Crystal Form 2
Descriptor: 1,2-ETHANEDIOL, BENZOIC ACID, MAGNESIUM ION, ...
Authors:Schellenberg, M.J, Krahn, J.M, Williams, R.S.
Deposit date:2019-08-01
Release date:2020-04-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (0.851 Å)
Cite:Ubiquitin stimulated reversal of topoisomerase 2 DNA-protein crosslinks by TDP2.
Nucleic Acids Res., 48, 2020
5MRX
DownloadVisualize
BU of 5mrx by Molmil
27-nt SRL with a 5-hydroxymethyl cytidine modification
Descriptor: RNA (27-MER)
Authors:Ennifar, E, Micura, R.
Deposit date:2016-12-28
Release date:2018-01-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (0.851 Å)
Cite:Synthesis, Thermodynamic Properties, and Crystal Structure of RNA Oligonucleotides Containing 5-Hydroxymethylcytosine
J.Org.Chem., 2017
5NQI
DownloadVisualize
BU of 5nqi by Molmil
E.coli 16S rRNA Sarcin-Ricin Loop containing a 5-hydroxymethylcytosine modification
Descriptor: E.Coli 27-mer SRL RNA
Authors:Ennifar, E, Micura, R.
Deposit date:2017-04-20
Release date:2017-07-26
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (0.851 Å)
Cite:Synthesis, Thermodynamic Properties, and Crystal Structure of RNA Oligonucleotides Containing 5-Hydroxymethylcytosine.
J. Org. Chem., 82, 2017
5D9E
DownloadVisualize
BU of 5d9e by Molmil
Crystal Structure of the Proline-rich Lasso Peptide Caulosegnin II
Descriptor: CHLORIDE ION, Caulosegnin II
Authors:Fage, C.D, Hegemann, J.D, Harms, K, Marahiel, M.A.
Deposit date:2015-08-18
Release date:2016-02-17
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (0.859 Å)
Cite:The ring residue proline 8 is crucial for the thermal stability of the lasso peptide caulosegnin II.
Mol Biosyst, 12, 2016
5MNN
DownloadVisualize
BU of 5mnn by Molmil
Cationic trypsin in complex with N-amidinopiperidine (deuterated sample at 100 K)
Descriptor: CALCIUM ION, Cationic trypsin, SULFATE ION, ...
Authors:Schiebel, J, Heine, A, Klebe, G.
Deposit date:2016-12-13
Release date:2018-01-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (0.859 Å)
Cite:Intriguing role of water in protein-ligand binding studied by neutron crystallography on trypsin complexes.
Nat Commun, 9, 2018
7X48
DownloadVisualize
BU of 7x48 by Molmil
The 0.86 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with pelargonic acid
Descriptor: Fatty acid-binding protein, heart, HEXAETHYLENE GLYCOL, ...
Authors:Sugiyama, S, Matsuoka, S, Tsuchikawa, H, Sonoyama, M, Inoue, Y, Hayashi, F, Murata, M.
Deposit date:2022-03-02
Release date:2023-03-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (0.86 Å)
Cite:The 0.86 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with pelargonic acid
To Be Published
7QSH
DownloadVisualize
BU of 7qsh by Molmil
23S ribosomal RNA Sarcin Ricin Loop 27-nt fragment containing a Xanthosine residue at position 2648
Descriptor: 23S ribosomal RNA Sarcin Ricin Loop 27-nucleotide fragment, 9-[(2~{R},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-[[tris(oxidanyl)-$l^{5}-phosphanyl]oxymethyl]oxolan-2-yl]-2-oxidanyl-1~{H}-purin-6-one, GLYCEROL, ...
Authors:Ennifar, E, Micura, R.
Deposit date:2022-01-13
Release date:2023-01-25
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (0.86 Å)
Cite:Towards a comprehensive understanding of RNA deamination: synthesis and properties of xanthosine-modified RNA.
Nucleic Acids Res., 50, 2022
4UAA
DownloadVisualize
BU of 4uaa by Molmil
CTX-M-14 Class A Beta-Lactamase in Complex with a Non-Covalent Inhibitor at Sub-Angstrom Resolution
Descriptor: Beta-lactamase CTX-M-14, N-[3-(2H-tetrazol-5-yl)phenyl]-6-(trifluoromethyl)-1H-benzimidazole-4-carboxamide, PHOSPHATE ION
Authors:Nichols, D.A, Chen, Y.
Deposit date:2014-08-08
Release date:2015-06-24
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (0.86 Å)
Cite:Ligand-Induced Proton Transfer and Low-Barrier Hydrogen Bond Revealed by X-ray Crystallography.
J.Am.Chem.Soc., 137, 2015
1ALZ
DownloadVisualize
BU of 1alz by Molmil
GRAMICIDIN D FROM BACILLUS BREVIS (ETHANOL SOLVATE)
Descriptor: ETHANOL, ILE-GRAMICIDIN C, VAL-GRAMICIDIN A
Authors:Burkhart, B.M, Pangborn, W.A, Duax, W.L, Langs, D.A.
Deposit date:1997-06-06
Release date:1998-03-04
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (0.86 Å)
Cite:Heterodimer Formation and Crystal Nucleation of Gramicidin D
Biophys.J., 75, 1998
1MUW
DownloadVisualize
BU of 1muw by Molmil
The 0.86 Angstrom Structure of Xylose Isomerase
Descriptor: HYDROXIDE ION, MAGNESIUM ION, MANGANESE (II) ION, ...
Authors:Fenn, T.D, Ringe, D, Petsko, G.A.
Deposit date:2002-09-24
Release date:2002-11-06
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (0.86 Å)
Cite:Active Site Dynamics at 0.86A: Crystallographic Analysis of a Metal-Mediated Hydride Shift
To be Published
8K9N
DownloadVisualize
BU of 8k9n by Molmil
Subatomic resolution structure of Pseudoazurin from Alcaligenes faecalis
Descriptor: COPPER (II) ION, Pseudoazurin, SULFATE ION
Authors:Fukuda, Y, Lintuluoto, M, Kurihara, K, Hasegawa, K, Inoue, T, Tamada, T.
Deposit date:2023-08-01
Release date:2024-02-14
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (0.86 Å)
Cite:Overlooked Hydrogen Bond in a Blue Copper Protein Uncovered by Neutron and Sub- angstrom ngstrom Resolution X-ray Crystallography.
Biochemistry, 63, 2024
3WDN
DownloadVisualize
BU of 3wdn by Molmil
High-resolution X-ray crystal structure of bovine H-protein using a high-pressure cryocooling method
Descriptor: GLYCEROL, Glycine cleavage system H protein, mitochondrial
Authors:Higashiura, A, Nakagawa, A.
Deposit date:2013-06-19
Release date:2013-10-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (0.86 Å)
Cite:High-resolution X-ray crystal structure of bovine H-protein using the high-pressure cryocooling method
J.SYNCHROTRON RADIAT., 20, 2013
6S2S
DownloadVisualize
BU of 6s2s by Molmil
Hydrogenated human myelin protein P2 at 0.86-A resolution
Descriptor: CITRIC ACID, Myelin P2 protein, PALMITIC ACID, ...
Authors:Laulumaa, S, Kursula, P.
Deposit date:2019-06-21
Release date:2019-08-28
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (0.86 Å)
Cite:Sub-Atomic Resolution Crystal Structures Reveal Conserved Geometric Outliers at Functional Sites.
Molecules, 24, 2019
3NJW
DownloadVisualize
BU of 3njw by Molmil
First High Resolution Crystal Structure of a Lasso Peptide
Descriptor: Bicyclic peptide BI-32169
Authors:Nar, H, Schmid, A, Puder, C, Potterat, O.
Deposit date:2010-06-18
Release date:2010-09-01
Last modified:2011-08-10
Method:X-RAY DIFFRACTION (0.86 Å)
Cite:High-resolution crystal structure of a lasso Peptide.
Chemmedchem, 5, 2010

219140

PDB entries from 2024-05-01

PDB statisticsPDBj update infoContact PDBjnumon