PDB: 54 resultsInfo pagesStatus searchChemie searchBIRD

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4KP2	Crystal structure of homoaconitase large subunit from methanococcus jannaschii (MJ1003) Descriptor: Homoaconitase large subunit Authors: Hwang, K.Y, Lee, E.H. Deposit date: 2013-05-13 Release date: 2014-04-23 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.504 Å) Cite: Structural characterization and comparison of the large subunits of IPM isomerase and homoaconitase from Methanococcus jannaschii Acta Crystallogr.,Sect.D, 70, 2014
4KP1	Crystal structure of IPM isomerase large subunit from methanococcus jannaschii (MJ0499) Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2,4-dimethylpentane-2,4-diol, Isopropylmalate/citramalate isomerase large subunit, ... Authors: Hwang, K.Y, Lee, E.H. Deposit date: 2013-05-13 Release date: 2014-04-23 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural characterization and comparison of the large subunits of IPM isomerase and homoaconitase from Methanococcus jannaschii Acta Crystallogr.,Sect.D, 70, 2014
4NQY	The reduced form of MJ0499 Descriptor: Isopropylmalate/citramalate isomerase large subunit, ZINC ION Authors: Hwang, K.Y, Lee, E.H, Lee, K. Deposit date: 2013-11-26 Release date: 2014-05-21 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural characterization and comparison of the large subunits of IPM isomerase and homoaconitase from Methanococcus jannaschii Acta Crystallogr.,Sect.D, 70, 2014
3SNP	Crystal structure analysis of iron regulatory protein 1 in complex with ferritin H IRE RNA Descriptor: Cytoplasmic aconitate hydratase, ferritin H IRE RNA Authors: Volz, K, Selezneva, A.I, Walden, W.E. Deposit date: 2011-06-29 Release date: 2011-07-27 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structure of dual function iron regulatory protein 1 complexed with ferritin IRE-RNA. Science, 314, 2006
4AC6	Corynebacterium glutamicum AcnR AU derivative structure Descriptor: GOLD ION, HTH-TYPE TRANSCRIPTIONAL REPRESSOR ACNR Authors: Garcia-Nafria, J, Baumgart, M, Turkenburg, J.P, Wilkinson, A.J, Bott, M, Wilson, K.S. Deposit date: 2011-12-14 Release date: 2012-12-26 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.54 Å) Cite: Crystal and Solution Studies Reveal that the Transcriptional Regulator Acnr of Corynebacterium Glutamicum is Regulated by Citrate:Mg2+ Binding to a Non-Canonical Pocket. J.Biol.Chem., 288, 2013
6VCD	Cryo-EM structure of IRP2-FBXL5-SKP1 complex Descriptor: F-box/LRR-repeat protein 5, FE2/S2 (INORGANIC) CLUSTER, Iron-responsive element binding protein 2, ... Authors: Wang, H, Shi, H, Zheng, N. Deposit date: 2019-12-20 Release date: 2020-08-05 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (3 Å) Cite: FBXL5 Regulates IRP2 Stability in Iron Homeostasis via an Oxygen-Responsive [2Fe2S] Cluster. Mol.Cell, 78, 2020
2PVZ	Crystal structure of methylaconitate isomerase PrpF from Shewanella oneidensis Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, PrpF methylaconitate isomerase Authors: Garvey, G.S, Rayment, I.R. Deposit date: 2007-05-10 Release date: 2007-08-21 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.97 Å) Cite: The three-dimensional crystal structure of the PrpF protein of Shewanella oneidensis complexed with trans-aconitate: insights into its biological function. Protein Sci., 16, 2007
2PKP	Crystal structure of 3-isopropylmalate dehydratase (leuD)from Methhanocaldococcus Jannaschii DSM2661 (MJ1271) Descriptor: DI(HYDROXYETHYL)ETHER, Homoaconitase small subunit, ZINC ION Authors: Jeyakanthan, J, Gayathri, D.R, Velmurugan, D, Agari, Y, Ebihara, A, Kuramitsu, S, Shinkai, A, Shiro, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-04-18 Release date: 2008-04-22 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Substrate specificity determinants of the methanogen homoaconitase enzyme: structure and function of the small subunit Biochemistry, 49, 2010
2PW0	crystal structure of trans-aconitate bound to methylaconitate isomerase PrpF from Shewanella oneidensis Descriptor: 1,2-ETHANEDIOL, PrpF methylaconitate isomerase, TRICARBALLYLIC ACID Authors: Garvey, G.S, Rayment, I.R. Deposit date: 2007-05-10 Release date: 2007-08-21 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.57 Å) Cite: The three-dimensional crystal structure of the PrpF protein of Shewanella oneidensis complexed with trans-aconitate: insights into its biological function. Protein Sci., 16, 2007
7RBP	Medicago truncatula D-1-piperideine-2-carboxylic acid reductase Descriptor: Ornithine cyclodeaminase/mu-crystallin Authors: Torrens-spence, M.P, Weng, J.K. Deposit date: 2021-07-06 Release date: 2022-07-06 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Pipecolic acid pathway is conserved in systemic acquired resistance between dicotyledon and monocotyledon plants To Be Published
6GEU	Crystal structure of the C230A mutant of human IBA57 Descriptor: Putative transferase CAF17, mitochondrial Authors: Calderone, V, Ciofi-Baffoni, S, Gourdoupis, S, Banci, L, Nasta, V. Deposit date: 2018-04-27 Release date: 2019-04-03 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.55 Å) Cite: IBA57 Recruits ISCA2 to Form a [2Fe-2S] Cluster-Mediated Complex. J.Am.Chem.Soc., 140, 2018
4EC2	Crystal structure of trimeric frataxin from the yeast Saccharomyces cerevisiae, complexed with ferrous Descriptor: FE (II) ION, Frataxin homolog, mitochondrial Authors: Soderberg, C.A.G, Rajan, S, Gakh, O, Isaya, G, Al-Karadaghi, S. Deposit date: 2012-03-26 Release date: 2013-01-30 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.002 Å) Cite: The molecular basis of iron-induced oligomerization of frataxin and the role of the ferroxidation reaction in oligomerization. J.Biol.Chem., 288, 2013
1V7L	Structure of 3-isopropylmalate isomerase small subunit from Pyrococcus horikoshii Descriptor: 3-isopropylmalate dehydratase small subunit Authors: Yao, M, Kirita, T, Sakai, N, Tanaka, I. Deposit date: 2003-12-18 Release date: 2004-11-16 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.98 Å) Cite: Crystal Structure of the Pyrococcus horikoshii Isopropylmalate Isomerase Small Subunit Provides Insight into the Dual Substrate Specificity of the Enzyme J.Mol.Biol., 344, 2004
4OXP	X-ray crystal structure of the S1 and 5'-sensor domains of RNase E from Caulobacter crescentus Descriptor: Ribonuclease E Authors: Voss, J.E, Luisi, B.F.L, Hardwick, S.W. Deposit date: 2014-02-06 Release date: 2014-12-03 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Molecular recognition of RhlB and RNase D in the Caulobacter crescentus RNA degradosome. Nucleic Acids Res., 42, 2014
5K87	crystal structure of malonate bound to methylaconitate isomerase PrpF from Shewanella oneidensis Descriptor: 2-methyl-aconitate isomerase, MALONATE ION Authors: Rayment, I, Wetterhorn, K. Deposit date: 2016-05-27 Release date: 2017-05-31 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.219 Å) Cite: The PrpF protein of Shewanella oneidensis MR-1 catalyzes the isomerization of 2-methyl-cis-aconitate during the catabolism of propionate via the AcnD-dependent 2-methylcitric acid cycle. PLoS ONE, 12, 2017
4P3X	Structure of the Fe4S4 quinolinate synthase NadA from Thermotoga maritima Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, IRON/SULFUR CLUSTER, Quinolinate synthase A, ... Authors: Cherrier, M.V, Chan, A, Darnault, C, Reichmann, D, Amara, P, Ollagnier de Choudens, S, Fontecilla-Camps, J.C. Deposit date: 2014-03-10 Release date: 2014-04-02 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.65 Å) Cite: The crystal structure of Fe4S4 quinolinate synthase unravels an enzymatic dehydration mechanism that uses tyrosine and a hydrolase-type triad. J.Am.Chem.Soc., 136, 2014
5MUX	Crystal structure of 2-methylcitrate dehydratase (MmgE) from Bacillus subtilis. Descriptor: 2-methylcitrate dehydratase, L(+)-TARTARIC ACID Authors: Baker, G.E, Race, P.R. Deposit date: 2017-01-14 Release date: 2018-02-14 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of 2-methylcitrate dehydratase (MmgE) from Bacillus subtilis. To Be Published
3SN2	Crystal structure analysis of iron regulatory protein 1 in complex with transferrin receptor IRE B RNA Descriptor: Cytoplasmic aconitate hydratase, transferrin receptor iron regulatory element B RNA Authors: Volz, K, Selezneva, A.I, Walden, W.E. Deposit date: 2011-06-28 Release date: 2011-11-23 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.99 Å) Cite: Accommodating variety in iron-responsive elements: Crystal structure of transferrin receptor 1 B IRE bound to iron regulatory protein 1. Febs Lett., 586, 2012
3H5H	LeuD_1-186 small subunit of isopropylmalate isomerase (Rv2987c) from mycobacterium tuberculosis Descriptor: 3-isopropylmalate dehydratase small subunit Authors: Manikandan, K, Geerlof, A, Weiss, M.S. Deposit date: 2009-04-22 Release date: 2010-04-07 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural studies on the enzyme complex isopropylmalate isomerase (LeuCD) from Mycobacterium tuberculosis Proteins, 79, 2011
5DIH	Structure of Haliangium ochraceum BMC-T HO-5812 Descriptor: Microcompartments protein Authors: Sutter, M, Aussignargues, C, Turmo, A, Kerfeld, C.A. Deposit date: 2015-09-01 Release date: 2016-02-03 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.444 Å) Cite: Structure and Function of a Bacterial Microcompartment Shell Protein Engineered to Bind a [4Fe-4S] Cluster. J.Am.Chem.Soc., 138, 2016
5DII	Structure of an engineered bacterial microcompartment shell protein binding a [4Fe-4S] cluster Descriptor: IRON/SULFUR CLUSTER, Microcompartments protein Authors: Sutter, M, Aussignargues, C, Turmo, A, Kerfeld, C.A. Deposit date: 2015-09-01 Release date: 2016-02-03 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.804 Å) Cite: Structure and Function of a Bacterial Microcompartment Shell Protein Engineered to Bind a [4Fe-4S] Cluster. J.Am.Chem.Soc., 138, 2016
3H5E	LeuD_1-156 small subunit of isopropylmalate isomerase (Rv2987c) from mycobacterium tuberculosis Descriptor: 3-isopropylmalate dehydratase small subunit Authors: Manikandan, K, Geerlof, A, Weiss, M.S. Deposit date: 2009-04-22 Release date: 2010-04-07 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural studies on the enzyme complex isopropylmalate isomerase (LeuCD) from Mycobacterium tuberculosis Proteins, 79, 2011
3H5J	LeuD_1-168 small subunit of isopropylmalate isomerase (Rv2987c) from mycobacterium tuberculosis Descriptor: 1,2-ETHANEDIOL, 3-isopropylmalate dehydratase small subunit, SULFATE ION Authors: Manikandan, K, Geerlof, A, Weiss, M.S. Deposit date: 2009-04-22 Release date: 2010-04-07 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Structural studies on the enzyme complex isopropylmalate isomerase (LeuCD) from Mycobacterium tuberculosis Proteins, 79, 2011
4IWH	Crystal structure of a 3-isopropylmalate dehydrogenase from Burkholderia pseudomallei Descriptor: 3-isopropylmalate dehydrogenase, MAGNESIUM ION Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2013-01-23 Release date: 2013-02-13 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Crystal structure of a 3-isopropylmalate dehydrogenase from Burkholderia pseudomallei TO BE PUBLISHED
3KEF	Crystal structure of IspH:DMAPP-complex Descriptor: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, DIMETHYLALLYL DIPHOSPHATE, FE3-S4 CLUSTER Authors: Groll, M, Graewert, T, Span, I, Eisenreich, W, Bacher, A. Deposit date: 2009-10-26 Release date: 2010-01-12 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Probing the reaction mechanism of IspH protein by x-ray structure analysis. Proc.Natl.Acad.Sci.USA, 107, 2010

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