PDB: 30506 resultsInfo pagesStatus searchChemie searchBIRD

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5AY3	Crystal structure of RNA duplex containing C-C base pairs Descriptor: RNA (5'-R(*GP*GP*AP*CP*UP*(CBR)P*GP*A*CP*UP*CP*C)-3') Authors: Kondo, J, Tada, Y, Dairaku, T, Saneyoshi, H, Okamoto, I, Tanaka, Y, Ono, A. Deposit date: 2015-08-06 Release date: 2015-10-21 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.2 Å) Cite: High-Resolution Crystal Structure of a Silver(I)-RNA Hybrid Duplex Containing Watson-Crick-like CSilver(I)C Metallo-Base Pairs Angew.Chem.Int.Ed.Engl., 54, 2015
4JRT	Crystal structure of an A-form RNA duplex containing three GU base pairs Descriptor: RNA (5'-R(P*CP*CP*UP*GP*CP*AP*CP*UP*GP*CP*CP*C)-3'), RNA (5'-R(P*GP*GP*GP*UP*GP*GP*UP*GP*CP*GP*GP*G)-3') Authors: Kondo, J, Dock-Bregeon, A.C, Willkomm, D.K, Hartmann, R.K, Westhof, E. Deposit date: 2013-03-21 Release date: 2013-06-05 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure of an A-form RNA duplex obtained by degradation of 6S RNA in a crystallization droplet Acta Crystallogr.,Sect.F, 69, 2013
8FEP	16mer self-complementary duplex RNA with two continuous native U:U pairs Descriptor: RNA 16mer Authors: Fang, Z, Szostak, J.W. Deposit date: 2022-12-06 Release date: 2024-01-24 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying. J.Am.Chem.Soc., 146, 2024
8FER	16mer self-complementary duplex RNA with two continuous s(2)U:s(2)U pairs Descriptor: RNA 16mer with two continuous s(2)U Authors: Fang, Z, Zhou, L, Szostak, J.W. Deposit date: 2022-12-06 Release date: 2024-01-24 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.54 Å) Cite: Unusual Base Pair between Two 2-Thiouridines and Its Implication for Nonenzymatic RNA Copying. J.Am.Chem.Soc., 146, 2024
6Z18	Crystal structure of RNA-10mer: CCGG(N4,N4-dimethyl-C)GCCGG; R32 form Descriptor: RNA-10mer: CCGG(N4,N4-dimethyl-C)GCCGG Authors: Ruszkowski, M, Sekula, B, Mao, S, Haruehanroengra, P, Sheng, J. Deposit date: 2020-05-12 Release date: 2020-09-02 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.81 Å) Cite: Base pairing, structural and functional insights into N4-methylcytidine (m4C) and N4,N4-dimethylcytidine (m42C) modified RNA. Nucleic Acids Res., 48, 2020
5UX3	RNA hairpin structure containing 2-MeImpG monomer analogue and 2-MeImp-oligomer analogue Descriptor: 5'-O-[(S)-hydroxy(4-methyl-1H-imidazol-5-yl)phosphoryl]guanosine, RNA (25-MER), RNA (5'-D(*(RG))-R(P*CP*AP*CP*CP*UP*CP*A)-3') Authors: Zhang, W, Oh, S.S, Szostak, J.W. Deposit date: 2017-02-21 Release date: 2018-02-21 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural Rationale for the Enhanced Catalysis of Nonenzymatic RNA Primer Extension by a Downstream Oligonucleotide. J. Am. Chem. Soc., 140, 2018
7DD4	Solution structure of an RNA derived from the joint region of the TAR and PolyA stems of HIV-1 genomic RNA Descriptor: RNA (36-MER) Authors: Obayashi, C.M, Shinohara, Y, Masuda, T, Kawai, G. Deposit date: 2020-10-27 Release date: 2021-06-09 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Influence of the 5'-terminal sequences on the 5'-UTR structure of HIV-1 genomic RNA. Sci Rep, 11, 2021
6XUR	RNA dodecamer with a 6-hydrazino-2-aminopurine modified base Descriptor: MAGNESIUM ION, RNA dodecamer with a 6-hydrazino-2-aminopurine modified base Authors: Ennifar, E, Micura, R, Gasser, C, Brillet, K. Deposit date: 2020-01-21 Release date: 2020-02-19 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Thioguanosine Conversion Enables mRNA-Lifetime Evaluation by RNA Sequencing Using Double Metabolic Labeling (TUC-seq DUAL). Angew.Chem.Int.Ed.Engl., 59, 2020
6XUS	RNA dodecamer with a 6-hydrazino-2-aminopurine modified base Descriptor: MAGNESIUM ION, RNA dodecamer with a 6-hydrazino-2-aminopurine modified base, SODIUM ION Authors: Ennifar, E, Micura, R, Gasser, C, Brillet, K. Deposit date: 2020-01-21 Release date: 2021-02-03 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Thioguanosine Conversion Enables mRNA-Lifetime Evaluation by RNA Sequencing Using Double Metabolic Labeling (TUC-seq DUAL). Angew.Chem.Int.Ed.Engl., 59, 2020
1M82	SOLUTION STRUCTURE OF THE COMPLEMENTARY RNA PROMOTER OF INFLUENZA A VIRUS Descriptor: RNA (25-MER): THE COMPLEMENTARY RNA PROMOTER OF INFLUENZA A VIRUS Authors: Park, C.-J, Bae, S.-H, Lee, M.-K, Varani, G, Choi, B.-S. Deposit date: 2002-07-24 Release date: 2003-06-03 Last modified: 2022-02-23 Method: SOLUTION NMR Cite: Solution structure of the influenza A virus cRNA promoter: implications for differential recognition of viral promoter structures by RNA-dependent RNA polymerase NUCLEIC ACIDS RES., 31, 2003
5HN2	Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex Descriptor: RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), SODIUM ION Authors: Luo, Z.P, Sheng, J. Deposit date: 2016-01-18 Release date: 2016-04-27 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Base pairing and structural insights into the 5-formylcytosine in RNA duplex. Nucleic Acids Res., 44, 2016
5HNJ	Base Pairing and Structure Insights into the 5-Formylcytosine in RNA Duplex Descriptor: RNA (5'-R(*GP*UP*AP*(OFC)P*GP*UP*AP*C)-3'), SODIUM ION Authors: Luo, Z.P, Sheng, J. Deposit date: 2016-01-18 Release date: 2016-04-27 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.24 Å) Cite: Base pairing and structural insights into the 5-formylcytosine in RNA duplex. Nucleic Acids Res., 44, 2016
7JRS	Crystal structures of artificially designed homomeric RNA nanoarchitectures Descriptor: RNA 3D nanocage Authors: Liu, D, Shao, Y, Piccirilli, J.A, Weizmann, Y. Deposit date: 2020-08-12 Release date: 2021-09-08 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.21 Å) Cite: Structures of artificially designed discrete RNA nanoarchitectures at near-atomic resolution. Sci Adv, 7, 2021
7JRT	Crystal structures of artificially designed homomeric RNA nanoarchitectures Descriptor: RNA nano bracelet Authors: Liu, D, Shao, Y, Piccirilli, J.A, Weizmann, Y. Deposit date: 2020-08-12 Release date: 2021-09-08 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.07 Å) Cite: Structures of artificially designed discrete RNA nanoarchitectures at near-atomic resolution. Sci Adv, 7, 2021
5X3Z	Solution structure of musashi1 RBD2 in complex with RNA Descriptor: RNA (5'-R(*GP*UP*AP*GP*U)-3'), RNA-binding protein Musashi homolog 1 Authors: Iwaoka, R, Nagata, T, Tsuda, K, Imai, T, Okano, H, Kobayashi, N, Katahira, M. Deposit date: 2017-02-09 Release date: 2017-12-13 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structural Insight into the Recognition of r(UAG) by Musashi-1 RBD2, and Construction of a Model of Musashi-1 RBD1-2 Bound to the Minimum Target RNA Molecules, 22, 2017
1KOC	RNA APTAMER COMPLEXED WITH ARGININE, NMR Descriptor: ARGININE, RNA (5'-R(P*AP*CP*AP*GP*GP*UP*AP*GP*GP*UP*CP*GP*CP*U)-3'), RNA (5'-R(P*AP*GP*AP*AP*GP*GP*AP*GP*CP*GP*U)-3') Authors: Yang, Y.S, Kochoyan, M, Burgstaller, P, Westhof, E, Famulok, M. Deposit date: 1996-03-28 Release date: 1996-08-17 Last modified: 2022-02-23 Method: SOLUTION NMR Cite: Structural basis of ligand discrimination by two related RNA aptamers resolved by NMR spectroscopy. Science, 272, 1996
5V0H	RNA duplex with 2-MeImpG analogue bound-one binding site Descriptor: 5'-O-[(S)-hydroxy(4-methyl-1H-imidazol-5-yl)phosphoryl]guanosine, MAGNESIUM ION, RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') Authors: Zhang, W, Tam, C.P, Szostak, J.W. Deposit date: 2017-02-28 Release date: 2017-03-08 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural Rationale for the Enhanced Catalysis of Nonenzymatic RNA Primer Extension by a Downstream Oligonucleotide. J. Am. Chem. Soc., 140, 2018
1KOD	RNA APTAMER COMPLEXED WITH CITRULLINE, NMR Descriptor: CITRULLINE, RNA (5'-R(P*AP*CP*GP*GP*UP*UP*AP*GP*GP*UP*CP*GP*CP*U)-3'), RNA (5'-R(P*AP*GP*AP*AP*GP*GP*AP*GP*UP*GP*U)-3') Authors: Yang, Y.S, Kochoyan, M, Burgstaller, P, Westhof, E, Famulok, M. Deposit date: 1996-03-28 Release date: 1996-11-08 Last modified: 2023-11-15 Method: SOLUTION NMR Cite: Structural basis of ligand discrimination by two related RNA aptamers resolved by NMR spectroscopy. Science, 272, 1996
4QI2	X-ray structure of the ROQ domain from murine Roquin-1 in complex with a 23-mer Tnf-CDE RNA Descriptor: RNA (5'-R(*AP*CP*AP*UP*GP*UP*UP*UP*UP*CP*UP*GP*UP*GP*AP*AP*AP*AP*CP*GP*GP*AP*G)-3'), Roquin-1 Authors: Janowski, R, Schlundt, A, Sattler, M, Niessing, D. Deposit date: 2014-05-30 Release date: 2014-07-16 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural basis for RNA recognition in roquin-mediated post-transcriptional gene regulation. Nat.Struct.Mol.Biol., 21, 2014
5V0J	RNA duplex with 2-MeImpG analogue bound-2 binding sites Descriptor: 5'-O-[(S)-hydroxy(4-methyl-1H-imidazol-5-yl)phosphoryl]guanosine, MAGNESIUM ION, RNA (5'-R(*(LCC)P*(LCC)P*(LCA)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*U)-3') Authors: Zhang, W, Tam, C.P, Szostak, J.W. Deposit date: 2017-02-28 Release date: 2017-03-08 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structural Rationale for the Enhanced Catalysis of Nonenzymatic RNA Primer Extension by a Downstream Oligonucleotide. J. Am. Chem. Soc., 140, 2018
1NBR	Iron Responsive Element RNA Hairpin, NMR, 15 Structures Descriptor: RNA HAIRPIN Authors: McCallum, S.A, Pardi, A. Deposit date: 2002-12-03 Release date: 2003-03-04 Last modified: 2022-02-23 Method: SOLUTION NMR Cite: Refined Solution Structure of the Iron-responsive Element RNA Using Residual Dipolar Couplings J.Mol.Biol., 326, 2003
466D	DISORDER AND TWIN REFINEMENT OF RNA HEPTAMER DOUBLE HELIX Descriptor: RNA (5'-R(*GP*GP*GP*GP*CP*UP*A)-3'), RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3'), SODIUM ION, ... Authors: Mueller, U, Muller, Y.A, Herbst-Irmer, R, Sprinzl, M, Heinemann, U. Deposit date: 1999-04-14 Release date: 1999-08-16 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.16 Å) Cite: Disorder and twin refinement of RNA heptamer double helices. Acta Crystallogr.,Sect.D, 55, 1999
1FHK	NMR STRUCTURE OF THE 690 LOOP OF 16 S RRNA OF E. COLI Descriptor: RNA (5'-R(*GP*GP*CP*GP*GP*UP*GP*AP*AP*AP*UP*GP*CP*C)-3') Authors: Morosyuk, S.V, Cunningham, P.R, SantaLucia Jr, J. Deposit date: 2000-08-01 Release date: 2001-03-21 Last modified: 2022-02-23 Method: SOLUTION NMR Cite: Structure and function of the conserved 690 hairpin in Escherichia coli 16 S ribosomal RNA. II. NMR solution structure. J.Mol.Biol., 307, 2001
5C5W	1.25 A resolution structure of an RNA 20-mer Descriptor: RNA (5'-R(P*CP*CP*UP*GP*AP*GP*UP*UP*CP*AP*AP*UP*UP*CP*UP*AP*GP*CP*G)-3') Authors: Stewart, M, Valkov, E. Deposit date: 2015-06-22 Release date: 2015-10-14 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.25 Å) Cite: 1.25 angstrom resolution structure of an RNA 20-mer that binds to the TREX2 complex. Acta Crystallogr.,Sect.F, 71, 2015
472D	STRUCTURE OF AN OCTAMER RNA WITH TANDEM GG/UU MISPAIRS Descriptor: RNA (5'-R(*GP*UP*AP*GP*GP*CP*AP*C)-3'), RNA (5'-R(*GP*UP*GP*UP*UP*UP*AP*C)-3') Authors: Deng, J, Sundaralingam, M. Deposit date: 1999-05-14 Release date: 2000-11-27 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Synthesis and crystal structure of an octamer RNA r(guguuuac)/r(guaggcac) with G.G/U.U tandem wobble base pairs: comparison with other tandem G.U pairs. Nucleic Acids Res., 28, 2000

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