PDB: 205 件ウェブページステータス検索Chemie searchBIRD

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2V0S	crystal structure of a hairpin exchange variant (LR1) of the targeting LINE-1 retrotransposon endonuclease 分子名称: GLYCEROL, LR1, MANGANESE (II) ION, ... 著者 Repanas, K, Zingler, N, Layer, L.E, Schumann, G.G, Perrakis, A, Weichenrieder, O. 登録日 2007-05-17 公開日 2007-07-17 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Determinants for DNA Target Structure Selectivity of the Human Line-1 Retrotransposon Endonuclease. Nucleic Acids Res., 35, 2007
2JC5	Apurinic Apyrimidinic (AP) endonuclease (NApe) from Neisseria Meningitidis 分子名称: 1,4-DIETHYLENE DIOXIDE, BICINE, EXODEOXYRIBONUCLEASE, ... 著者 Carpenter, E.P, Corbett, A, Thomson, H, Adacha, J, Jensen, K, Bergeron, J, Kasampalidis, I, Exley, R, Winterbotham, M, Tang, C, Baldwin, G.S, Freemont, P. 登録日 2006-12-19 公開日 2007-03-06 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Ap Endonuclease Paralogues with Distinct Activities in DNA Repair and Bacterial Pathogenesis. Embo J., 26, 2007
2JC4	3'-5' exonuclease (NExo) from Neisseria Meningitidis 分子名称: ACETATE ION, DIHYDROGENPHOSPHATE ION, EXODEOXYRIBONUCLEASE III, ... 著者 Carpenter, E.P, Corbett, A, Thomson, H, Adacha, J, Jensen, K, Bergeron, J, Kasampalidis, I, Exley, R, Winterbotham, M, Tang, C, Baldwin, G, Freemont, P. 登録日 2006-12-19 公開日 2007-03-06 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Ap Endonuclease Paralogues with Distinct Activities in DNA Repair and Bacterial Pathogenesis. Embo J., 26, 2007
2ISI	Crystal structure of Ape1 from Homo sapiens in a new crystal form complexed with a ligand 分子名称: DNA-(apurinic or apyrimidinic site) lyase, MAGNESIUM ION, PHOSPHATE ION 著者 Agarwal, R, Naidu, M.D. 登録日 2006-10-17 公開日 2006-10-31 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.76 Å) 主引用文献 Crystal structure of hApe1 in a new crystal form with a bound ligand: implications on catalytic mechanism and its inhibition To be Published
2D1K	Ternary complex of the WH2 domain of mim with actin-dnase I 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Actin, alpha skeletal muscle, ... 著者 Chereau, D, Kerff, F, Dominguez, R. 登録日 2005-08-26 公開日 2006-09-12 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structural basis for the actin-binding function of missing-in-metastasis Structure, 15, 2007
2F1N	Structure of CdtB, the biologically active subunit of Cytolethal Distending Toxin 分子名称: Cytolethal distending toxin subunit B 著者 Hontz, J.S, Yoder, M.D, Dreyfus, L.A. 登録日 2005-11-14 公開日 2006-07-04 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.73 Å) 主引用文献 Differences in Crystal and Solution Structures of the Cytolethal Distending Toxin B Subunit: RELEVANCE TO NUCLEAR TRANSLOCATION AND FUNCTIONAL ACTIVATION. J.Biol.Chem., 281, 2006
2DDT	Crystal structure of sphingomyelinase from Bacillus cereus with magnesium ion 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, MAGNESIUM ION, SULFATE ION, ... 著者 Ago, H, Oda, M, Tsuge, H, Katunuma, N, Miyano, M, Sakurai, J, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2006-02-02 公開日 2006-05-02 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural basis of the sphingomyelin phosphodiesterase activity in neutral sphingomyelinase from Bacillus cereus. J.Biol.Chem., 281, 2006
2DDS	Crystal structure of sphingomyelinase from Bacillus cereus with cobalt ion 分子名称: COBALT (II) ION, Sphingomyelin phosphodiesterase 著者 Ago, H, Oda, M, Takahashi, M, Tsuge, H, Ochi, S, Katunuma, N, Miyano, M, Sakurai, J, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2006-02-02 公開日 2006-05-02 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural Basis of the Sphingomyelin Phosphodiesterase Activity in Neutral Sphingomyelinase from Bacillus cereus. J.Biol.Chem., 281, 2006
2DDR	Crystal structure of sphingomyelinase from Bacillus cereus with calcium ion 分子名称: CALCIUM ION, Sphingomyelin phosphodiesterase 著者 Ago, H, Oda, M, Takahashi, M, Tsuge, H, Ochi, S, Katunuma, N, Miyano, M, Sakurai, J, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2006-02-02 公開日 2006-05-02 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Structural Basis of the Sphingomyelin Phosphodiesterase Activity in Neutral Sphingomyelinase from Bacillus cereus. J.Biol.Chem., 281, 2006
2F2F	Crystal structure of cytolethal distending toxin (CDT) from Actinobacillus actinomycetemcomitans 分子名称: Cytolethal distending toxin A, Cytolethal distending toxin B, cytolethal distending toxin C 著者 Yamada, T, Komoto, J, Saiki, K, Konishi, K, Takusagawa, F. 登録日 2005-11-16 公開日 2006-03-28 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Variation of loop sequence alters stability of cytolethal distending toxin (CDT): crystal structure of CDT from Actinobacillus actinomycetemcomitans Protein Sci., 15, 2006
2A3Z	Ternary complex of the WH2 domain of WASP with Actin-DNAse I 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, Actin, ... 著者 Chereau, D, Kerff, F, Dominguez, R. 登録日 2005-06-27 公開日 2005-11-01 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.078 Å) 主引用文献 Actin-bound structures of Wiskott-Aldrich syndrome protein (WASP)-homology domain 2 and the implications for filament assembly Proc.Natl.Acad.Sci.Usa, 102, 2005
2A40	Ternary complex of the WH2 domain of WAVE with Actin-DNAse I 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, Actin, ... 著者 Chereau, D, Kerff, F, Dominguez, R. 登録日 2005-06-27 公開日 2005-11-01 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Actin-bound structures of Wiskott-Aldrich syndrome protein (WASP)-homology domain 2 and the implications for filament assembly Proc.Natl.Acad.Sci.Usa, 102, 2005
2A41	Ternary complex of the WH2 Domain of WIP with Actin-DNAse I 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Actin, alpha skeletal muscle, ... 著者 Chereau, D, Kerff, F, Dominguez, R. 登録日 2005-06-27 公開日 2005-11-01 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Actin-bound structures of Wiskott-Aldrich syndrome protein (WASP)-homology domain 2 and the implications for filament assembly Proc.Natl.Acad.Sci.Usa, 102, 2005
2A42	Actin-DNAse I Complex 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, Actin, ... 著者 Chereau, D, Kerff, F, Dominguez, R. 登録日 2005-06-27 公開日 2005-11-01 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Actin-bound structures of Wiskott-Aldrich syndrome protein (WASP)-homology domain 2 and the implications for filament assembly Proc.Natl.Acad.Sci.Usa, 102, 2005
1ZWX	Crystal Structure of SmcL 分子名称: GLYCEROL, PHOSPHATE ION, sphingomyelinase-c 著者 Openshaw, A.E.A, Race, P.R, Monzo, H.J, Vasquez-Boland, J.A, Banfield, M.J. 登録日 2005-06-06 公開日 2005-08-16 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure of SmcL, a bacterial neutral sphingomyelinase C from Listeria. J.Biol.Chem., 280, 2005
1SR4	Crystal Structure of the Haemophilus ducreyi cytolethal distending toxin 分子名称: BROMIDE ION, Cytolethal distending toxin subunit A, cytolethal distending toxin protein B, ... 著者 Nesic, D, Hsu, Y, Stebbins, C.E. 登録日 2004-03-22 公開日 2004-06-15 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Assembly and Function of a Bacterial Genotoxin Nature, 429, 2004
1VYB	Endonuclease domain of human LINE1 ORF2p 分子名称: GLYCEROL, ORF2 CONTAINS A REVERSE TRANSCRIPTASE DOMAIN, SULFATE ION, ... 著者 Weichenrieder, O, Repanas, K, Perrakis, A. 登録日 2004-04-25 公開日 2004-06-04 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal structure of the targeting endonuclease of the human LINE-1 retrotransposon. Structure, 12, 2004
1I9Y	CRYSTAL STRUCTURE OF INOSITOL POLYPHOSPHATE 5-PHOSPHATASE DOMAIN (IPP5C) OF SPSYNAPTOJANIN 分子名称: PHOSPHATIDYLINOSITOL PHOSPHATE PHOSPHATASE 著者 Tsujishita, Y, Guo, S, Stolz, L, York, J.D, Hurley, J.H. 登録日 2001-03-21 公開日 2001-05-16 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Specificity determinants in phosphoinositide dephosphorylation: crystal structure of an archetypal inositol polyphosphate 5-phosphatase. Cell(Cambridge,Mass.), 105, 2001
1I9Z	CRYSTAL STRUCTURE OF INOSITOL POLYPHOSPHATE 5-PHOSPHATASE DOMAIN (IPP5C) OF SPSYNAPTOJANIN IN COMPLEX WITH INOSITOL (1,4)-BISPHOSPHATE AND CALCIUM ION 分子名称: CALCIUM ION, D-MYO-INOSITOL-1,4-BISPHOSPHATE, PHOSPHATIDYLINOSITOL PHOSPHATE PHOSPHATASE 著者 Tsujishita, Y, Guo, S, Stolz, L, York, J.D, Hurley, J.H. 登録日 2001-03-21 公開日 2001-05-16 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Specificity determinants in phosphoinositide dephosphorylation: crystal structure of an archetypal inositol polyphosphate 5-phosphatase. Cell(Cambridge,Mass.), 105, 2001
1E9N	A second divalent metal ion in the active site of a new crystal form of human apurinic/apyrimidinic endonuclease, Ape1, and its implications for the catalytic mechanism 分子名称: DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE, LEAD (II) ION 著者 Beernink, P.T, Segelke, B.W, Rupp, B. 登録日 2000-10-24 公開日 2001-02-16 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Two Divalent Metal Ions in the Active Site of a New Crystal Form of Human Apurinic/Apyrimidinic Endonuclease, Ape1: Implications for the Catalytic Mechanism J.Mol.Biol., 307, 2001
1HD7	A Second Divalent Metal Ion in the Active Site of a New Crystal Form of Human Apurinic/Apyridinimic Endonuclease, Ape1, and its Implications for the Catalytic Mechanism 分子名称: DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE, LEAD (II) ION 著者 Beernink, P.T, Segelke, B.W, Rupp, B. 登録日 2000-11-09 公開日 2001-02-16 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Two Divalent Metal Ions in the Active Site of a New Crystal Form of Human Apurinic/Apyrimidinic Endonuclease, Ape1: Implications for the Catalytic Mechanism J.Mol.Biol., 307, 2001
1DE8	HUMAN APURINIC/APYRIMIDINIC ENDONUCLEASE-1 (APE1) BOUND TO ABASIC DNA 分子名称: DNA (5'-D(*CP*GP*AP*TP*CP*GP*GP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*CP*(3DR)P*GP*AP*TP*CP*G)-3'), MAJOR APURINIC/APYRIMIDINIC ENDONUCLEASE 著者 Mol, C.D, Izumi, T, Mitra, S, Tainer, J.A. 登録日 1999-11-13 公開日 2000-02-02 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination [corrected Nature, 403, 2000
1DE9	HUMAN APE1 ENDONUCLEASE WITH BOUND ABASIC DNA AND MN2+ ION 分子名称: 5'-d(*CP*TP*AP*C)-3', 5'-d(*GP*AP*TP*CP*GP*GP*TP*AP*G)-3', 5'-d(P*(3DR)P*GP*AP*TP*C)-3', ... 著者 Mol, C.D, Izumi, T, Mitra, S, Tainer, J.A. 登録日 1999-11-13 公開日 2000-02-02 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination Nature, 403, 2000
1DEW	CRYSTAL STRUCTURE OF HUMAN APE1 BOUND TO ABASIC DNA 分子名称: 5'-D(*GP*CP*GP*TP*CP*CP*(3DR)P*CP*GP*AP*CP*GP*AP*CP*G)-3', 5'-D(*GP*TP*CP*GP*TP*CP*GP*GP*GP*GP*AP*CP*GP*C)-3', MAJOR APURINIC/APYRIMIDINIC ENDONUCLEASE, ... 著者 Mol, C.D, Izumi, T, Mitra, S, Tainer, J.A. 登録日 1999-11-15 公開日 2000-02-02 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination Nature, 403, 2000
1BIX	THE CRYSTAL STRUCTURE OF THE HUMAN DNA REPAIR ENDONUCLEASE HAP1 SUGGESTS THE RECOGNITION OF EXTRA-HELICAL DEOXYRIBOSE AT DNA ABASIC SITES 分子名称: AP ENDONUCLEASE 1, PLATINUM (II) ION, SAMARIUM (III) ION 著者 Gorman, M.A, Morera, S, Rothwell, D.G, De La Fortelle, E, Mol, C.D, Tainer, J.A, Hickson, I.D, Freemont, P.S. 登録日 1998-06-19 公開日 1999-06-22 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The crystal structure of the human DNA repair endonuclease HAP1 suggests the recognition of extra-helical deoxyribose at DNA abasic sites. EMBO J., 16, 1997

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