PDB: 241 resultsInfo pagesStatus searchChemie searchBIRD

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8PV3	Chaetomium thermophilum pre-60S State 9 - pre-5S rotation - immature H68/H69 - composite structure Descriptor: 26S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Thoms, M, Cheng, J, Denk, T, Berninghausen, O, Beckmann, R. Deposit date: 2023-07-17 Release date: 2023-11-15 Last modified: 2023-12-20 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep., 24, 2023
8PV2	Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1 Descriptor: 26S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Thoms, M, Cheng, J, Denk, T, Berninghausen, O, Beckmann, R. Deposit date: 2023-07-17 Release date: 2023-11-15 Last modified: 2023-12-20 Method: ELECTRON MICROSCOPY (2.63 Å) Cite: Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep., 24, 2023
8PV5	Chaetomium thermophilum pre-60S State 8 - pre-5S rotation without Foot - composite structure Descriptor: 26S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Thoms, M, Cheng, J, Denk, T, Berninghausen, O, Beckmann, R. Deposit date: 2023-07-17 Release date: 2023-11-15 Last modified: 2023-12-20 Method: ELECTRON MICROSCOPY (2.86 Å) Cite: Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep., 24, 2023
8OVE	CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant Descriptor: 40S ribosomal protein L14, putative, 40S ribosomal protein S10, ... Authors: Rajan, K.S, Yonath, A. Deposit date: 2023-04-25 Release date: 2023-11-29 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: A single pseudouridine on rRNA regulates ribosome structure and function in the mammalian parasite Trypanosoma brucei. Nat Commun, 14, 2023
8PV6	Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure Descriptor: 26S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Thoms, M, Cheng, J, Denk, T, Berninghausen, O, Beckmann, R. Deposit date: 2023-07-17 Release date: 2023-11-15 Last modified: 2023-12-20 Method: ELECTRON MICROSCOPY (2.94 Å) Cite: Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep., 24, 2023
8PV4	Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure Descriptor: 26S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Thoms, M, Cheng, J, Denk, T, Berninghausen, O, Beckmann, R. Deposit date: 2023-07-17 Release date: 2023-11-15 Last modified: 2023-12-20 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep., 24, 2023
8OVA	CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : PARENTAL STRAIN Descriptor: 40S ribosomal protein L14, putative, 40S ribosomal protein S10, ... Authors: Rajan, K.S, Yonath, A. Deposit date: 2023-04-25 Release date: 2023-11-29 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.47 Å) Cite: A single pseudouridine on rRNA regulates ribosome structure and function in the mammalian parasite Trypanosoma brucei. Nat Commun, 14, 2023
8PVL	Chaetomium thermophilum pre-60S State 7 - pre-5S rotation lacking Utp30/ITS2 - composite structure Descriptor: 26S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Thoms, M, Cheng, J, Denk, T, Berninghausen, O, Beckmann, R. Deposit date: 2023-07-17 Release date: 2023-12-06 Last modified: 2023-12-20 Method: ELECTRON MICROSCOPY (2.19 Å) Cite: Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep., 24, 2023
8PVK	Chaetomium thermophilum pre-60S State 5 - pre-5S rotation - L1 inward - composite structure Descriptor: 26S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Thoms, M, Cheng, J, Denk, T, Berninghausen, O, Beckmann, R. Deposit date: 2023-07-17 Release date: 2023-12-06 Last modified: 2023-12-20 Method: ELECTRON MICROSCOPY (2.55 Å) Cite: Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep., 24, 2023
8PV8	Chaetomium thermophilum pre-60S State 4 - post-5S rotation with Rix1 complex without Foot - composite structure Descriptor: 26S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Thoms, M, Cheng, J, Denk, T, Berninghausen, O, Beckmann, R. Deposit date: 2023-07-17 Release date: 2024-01-10 Last modified: 2024-01-17 Method: ELECTRON MICROSCOPY (2.91 Å) Cite: Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep., 24, 2023
8SCB	Terminating ribosome with SRI-41315 Descriptor: (2S,4aS)-2-cyclobutyl-10-methyl-3-phenyl-2,10-dihydropyrimido[4,5-b]quinoline-4,5(3H,4aH)-dione, 18S_rRNA, 28S_rRNA, ... Authors: Yip, M.C.J, Coelho, J.P.L, Oltion, K, Tauton, J, Shao, S. Deposit date: 2023-04-05 Release date: 2023-12-27 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: Structure and consequences of eRF1 glued to the ribosomal decoding center To Be Published
8RJC	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1 Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Lewis, A.J.O, Hegde, R.S. Deposit date: 2023-12-20 Release date: 2024-01-24 Method: ELECTRON MICROSCOPY (2.90061 Å) Cite: Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1 To Be Published
8RJB	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4 Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Lewis, A.J.O, Hegde, R.S. Deposit date: 2023-12-20 Release date: 2024-01-24 Method: ELECTRON MICROSCOPY (2.69243 Å) Cite: Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4 To Be Published
8RJD	Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2 Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Lewis, A.J.O, Hegde, R.S. Deposit date: 2023-12-20 Release date: 2024-01-24 Method: ELECTRON MICROSCOPY (2.78574 Å) Cite: Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2 To Be Published
8QFD	UFL1 E3 ligase bound 60S ribosome Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Makhlouf, L, Kulathu, Y, Zeqiraj, E. Deposit date: 2023-09-04 Release date: 2024-02-21 Last modified: 2024-04-03 Method: ELECTRON MICROSCOPY (2.2 Å) Cite: The UFM1 E3 ligase recognizes and releases 60S ribosomes from ER translocons. Nature, 627, 2024
8E5T	Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediate Descriptor: 25S ribosomal RNA, 5.8S ribosomal RNA, 60S ribosomal protein L13-A, ... Authors: Sanghai, Z.A, Piwowarczyk, R, Vanden Broeck, A, Klinge, S. Deposit date: 2022-08-22 Release date: 2023-04-12 Last modified: 2023-05-31 Method: ELECTRON MICROSCOPY (4 Å) Cite: A co-transcriptional ribosome assembly checkpoint controls nascent large ribosomal subunit maturation. Nat.Struct.Mol.Biol., 30, 2023
8EUI	Ytm1 associated nascent 60S ribosome (-fkbp39) State 3 Descriptor: 60S ribosomal protein L10-A, 60S ribosomal protein L11-A, 60S ribosomal protein L13, ... Authors: Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. Deposit date: 2022-10-18 Release date: 2022-11-30 Last modified: 2022-12-14 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8ETH	Ytm1 associated 60S nascent ribosome State 1B Descriptor: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... Authors: Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. Deposit date: 2022-10-17 Release date: 2022-11-30 Last modified: 2022-12-14 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8ESQ	Ytm1 associated nascent 60S ribosome State 2 Descriptor: 25S rRNA (cytosine-C(5))-methyltransferase nop2, 60S ribosomal protein L13, 60S ribosomal protein L14, ... Authors: Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. Deposit date: 2022-10-14 Release date: 2022-11-30 Last modified: 2022-12-14 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8ETI	Fkbp39 associated 60S nascent ribosome State 1 Descriptor: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... Authors: Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. Deposit date: 2022-10-17 Release date: 2022-11-30 Last modified: 2022-12-14 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8ETJ	Fkbp39 associated 60S nascent ribosome State 2 Descriptor: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... Authors: Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. Deposit date: 2022-10-17 Release date: 2022-11-30 Last modified: 2022-12-14 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8ETG	Fkbp39 associated 60S nascent ribosome State 3 Descriptor: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... Authors: Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. Deposit date: 2022-10-17 Release date: 2022-11-30 Last modified: 2022-12-14 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8EUY	Ytm1 associated nascent 60S ribosome (-fkbp39) State 1A Descriptor: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... Authors: Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. Deposit date: 2022-10-19 Release date: 2022-11-30 Last modified: 2022-12-14 Method: ELECTRON MICROSCOPY (3 Å) Cite: Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8EUP	Ytm1 associated 60S nascent ribosome State 1A Descriptor: 60S ribosomal protein L13, 60S ribosomal protein L14, 60S ribosomal protein L15-A, ... Authors: Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. Deposit date: 2022-10-19 Release date: 2022-11-30 Last modified: 2022-12-14 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022
8EUG	Ytm1 associated nascent 60S ribosome State 3 Descriptor: 60S ribosomal protein L10-A, 60S ribosomal protein L11-A, 60S ribosomal protein L13, ... Authors: Zhou, X, Bilokapic, S, Deshmukh, A.A, Halic, M. Deposit date: 2022-10-18 Release date: 2022-11-30 Last modified: 2022-12-14 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Chromatin localization of nucleophosmin organizes ribosome biogenesis. Mol.Cell, 82, 2022

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