PDB: 1470 resultsInfo pagesStatus searchChemie searchBIRD

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5ZEU	M. smegmatis P/P state 30S ribosomal subunit Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Mishra, S, Ahmed, T, Tyagi, A, Shi, J, Bhushan, S. Deposit date: 2018-02-28 Release date: 2018-09-26 Last modified: 2019-11-06 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structures of Mycobacterium smegmatis 70S ribosomes in complex with HPF, tmRNA, and P-tRNA. Sci Rep, 8, 2018
5ZEB	M. Smegmatis P/P state 70S ribosome structure Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Mishra, S, Ahmed, T, Tyagi, A, Shi, J, Bhushan, S. Deposit date: 2018-02-27 Release date: 2018-09-26 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structures of Mycobacterium smegmatis 70S ribosomes in complex with HPF, tmRNA, and P-tRNA. Sci Rep, 8, 2018
5ZLU	Ribosome Structure bound to ABC-F protein. Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Su, W.X, Kumar, V, Ero, R, Andrew, S.W.W, Jian, S, Yong-Gui, G. Deposit date: 2018-03-29 Release date: 2018-08-01 Last modified: 2019-12-04 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Ribosome protection by antibiotic resistance ATP-binding cassette protein. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5ZEP	M. smegmatis hibernating state 70S ribosome structure Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Mishra, S, Ahmed, T, Tyagi, A, Shi, J, Bhushan, S. Deposit date: 2018-02-27 Release date: 2018-09-26 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structures of Mycobacterium smegmatis 70S ribosomes in complex with HPF, tmRNA, and P-tRNA. Sci Rep, 8, 2018
6AWB	Structure of 30S ribosomal subunit and RNA polymerase complex in non-rotated state Descriptor: 16S rRNA, 30S ribosomal protein S1, 30S ribosomal protein S10, ... Authors: Demo, G, Rasouly, A, Vasilyev, N, Loveland, A.B, Diaz-Avalos, R, Grigorieff, N, Nudler, E, Korostelev, A.A. Deposit date: 2017-09-05 Release date: 2017-10-18 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (6.7 Å) Cite: Structure of RNA polymerase bound to ribosomal 30S subunit. Elife, 6, 2017
6AWD	Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Demo, G, Rasouly, A, Vasilyev, N, Loveland, A.B, Diaz-Avalos, R, Grigorieff, N, Nudler, E, Korostelev, A.A. Deposit date: 2017-09-05 Release date: 2017-10-18 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (8.1 Å) Cite: Structure of RNA polymerase bound to ribosomal 30S subunit. Elife, 6, 2017
6B4V	Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Svidritskiy, E, Korostelev, A.A. Deposit date: 2017-09-27 Release date: 2018-02-07 Last modified: 2019-12-25 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Mechanism of Inhibition of Translation Termination by Blasticidin S. J. Mol. Biol., 430, 2018
6AWC	Structure of 30S ribosomal subunit and RNA polymerase complex in rotated state Descriptor: 16S rRNA, 30S ribosomal protein S1, 30S ribosomal protein S10, ... Authors: Demo, G, Rasouly, A, Vasilyev, N, Loveland, A.B, Diaz-Avalos, R, Grigorieff, N, Nudler, E, Korostelev, A.A. Deposit date: 2017-09-05 Release date: 2017-10-18 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (7.9 Å) Cite: Structure of RNA polymerase bound to ribosomal 30S subunit. Elife, 6, 2017
6AZ1	Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin Descriptor: E-site tRNA, LACK1, MAGNESIUM ION, ... Authors: Shalev-Benami, M, Zhang, Y, Rozenberg, H, Matzov, D, Zimmerman, E, Bashan, A, Jaffe, C.L, Yonath, A, Skiniotis, G. Deposit date: 2017-09-09 Release date: 2017-12-06 Last modified: 2019-07-03 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Atomic resolution snapshot of Leishmania ribosome inhibition by the aminoglycoside paromomycin. Nat Commun, 8, 2017
6BU8	70S ribosome with S1 domains 1 and 2 (Class 1) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S1, ... Authors: Loveland, A.B, Korostelev, A.A. Deposit date: 2017-12-08 Release date: 2018-01-31 Last modified: 2020-01-01 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Structural dynamics of protein S1 on the 70S ribosome visualized by ensemble cryo-EM. Methods, 137, 2018
6BZ8	Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M. Deposit date: 2017-12-22 Release date: 2018-11-14 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.74 Å) Cite: Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding. Nucleic Acids Res., 47, 2019
6BOH	Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Svidritskiy, E, Korostelev, A.A. Deposit date: 2017-11-20 Release date: 2018-05-23 Last modified: 2019-12-25 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Conformational Control of Translation Termination on the 70S Ribosome. Structure, 26, 2018
6BYQ	Crystal structure of Tyrosine-tRNA ligase from Helicobacter pylori G27 Descriptor: ISOPROPYL ALCOHOL, Tyrosine--tRNA ligase Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2017-12-21 Release date: 2018-03-21 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structure of Tyrosine-tRNA ligase from Helicobacter pylori G27 TO BE PUBLISHED
6C4I	Conformation of methylated GGQ in the peptidyl transferase center during translation termination Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Zeng, F, Jin, H. Deposit date: 2018-01-12 Release date: 2018-02-21 Last modified: 2020-01-08 Method: ELECTRON MICROSCOPY (3.24 Å) Cite: Conformation of methylated GGQ in the Peptidyl Transferase Center during Translation Termination. Sci Rep, 8, 2018
6BZ6	Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M. Deposit date: 2017-12-22 Release date: 2018-11-14 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.18 Å) Cite: Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding. Nucleic Acids Res., 47, 2019
6BUW	Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site. Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M. Deposit date: 2017-12-11 Release date: 2018-11-14 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding. Nucleic Acids Res., 47, 2019
6BOK	E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Svidritskiy, E, Korostelev, A.A. Deposit date: 2017-11-20 Release date: 2018-05-23 Last modified: 2019-12-25 Method: X-RAY DIFFRACTION (3.55 Å) Cite: Conformational Control of Translation Termination on the 70S Ribosome. Structure, 26, 2018
6BZ7	Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site. Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Hoffer, E.D, Maehigashi, T, Fagan, C.E, Dunham, C.M. Deposit date: 2017-12-22 Release date: 2018-11-14 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.68 Å) Cite: Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding. Nucleic Acids Res., 47, 2019
6CAO	Structure of the ribosomal decoding complex at ambient temperature Descriptor: 16S Ribosomal RNA rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: DeMirci, H. Deposit date: 2018-01-31 Release date: 2018-07-25 Last modified: 2019-04-17 Method: X-RAY DIFFRACTION (3.45 Å) Cite: Structure of the 30S ribosomal decoding complex at ambient temperature. RNA, 24, 2018
6BY1	E. coli pH03H9 complex Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Amiri, H, Noller, H.F. Deposit date: 2017-12-19 Release date: 2019-02-27 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.94 Å) Cite: Structural evidence for product stabilization by the ribosomal mRNA helicase. Rna, 25, 2019
6G4S	Cryo-EM structure of a late human pre-40S ribosomal subunit - State B Descriptor: 40S ribosomal protein S11, 40S ribosomal protein S13, 40S ribosomal protein S14, ... Authors: Ameismeier, M, Cheng, J, Berninghausen, O, Beckmann, R. Deposit date: 2018-03-28 Release date: 2018-06-06 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (4 Å) Cite: Visualizing late states of human 40S ribosomal subunit maturation. Nature, 558, 2018
8CD1	70S-PHIKZ014 Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Gerovac, M, Vogel, J. Deposit date: 2023-01-29 Release date: 2024-01-24 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (3 Å) Cite: Phage proteins target and co-opt host ribosomes immediately upon infection. Nat Microbiol, 9, 2024
6G5H	Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature Descriptor: 18S ribosomal RNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ... Authors: Ameismeier, M, Cheng, J, Berninghausen, O, Beckmann, R. Deposit date: 2018-03-29 Release date: 2018-06-06 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Visualizing late states of human 40S ribosomal subunit maturation. Nature, 558, 2018
6FYY	Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2) Descriptor: 18S ribosomal RNA, 40S ribosomal protein S0, 40S ribosomal protein S1, ... Authors: Llacer, J.L, Hussain, T, Gordiyenko, Y, Ramakrishnan, V. Deposit date: 2018-03-12 Release date: 2018-12-05 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (3.02 Å) Cite: Translational initiation factor eIF5 replaces eIF1 on the 40S ribosomal subunit to promote start-codon recognition. Elife, 7, 2018
6G4W	Cryo-EM structure of a late human pre-40S ribosomal subunit - State A Descriptor: 18S ribosomal RNA, 40S ribosomal protein S11, 40S ribosomal protein S13, ... Authors: Ameismeier, M, Cheng, J, Berninghausen, O, Beckmann, R. Deposit date: 2018-03-28 Release date: 2018-06-06 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Visualizing late states of human 40S ribosomal subunit maturation. Nature, 558, 2018

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