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7WIK
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BU of 7wik by Molmil
Crystal structure of oligoribonuclease of Mycobacterium smegmatis mc2 155
Descriptor: ACETATE ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Badhwar, P, Taneja, B.
Deposit date:2022-01-03
Release date:2022-12-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Three-dimensional structure of a mycobacterial oligoribonuclease reveals a unique C-terminal tail that stabilizes the homodimer.
J.Biol.Chem., 298, 2022
7N8W
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BU of 7n8w by Molmil
Crystal structure of ERI2 nuclease bound to rAMP
Descriptor: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 2, ...
Authors:Thapar, R, Arvai, A.S, Tainer, J.A.
Deposit date:2021-06-15
Release date:2022-07-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structure of ERI2 nuclease bound to rAMP
To Be Published
7N8V
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BU of 7n8v by Molmil
Crystal structure of free ERI2 nuclease
Descriptor: ERI1 exoribonuclease 2, SULFATE ION
Authors:Thapar, R, Arvai, A.S, Tainer, J.A.
Deposit date:2021-06-15
Release date:2022-07-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of free ERI2 nuclease
To Be Published
7YW5
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BU of 7yw5 by Molmil
Crystal Structure of the ITS1 processing by human ribonuclease ISG20L2 with mutation D327A
Descriptor: Interferon-stimulated 20 kDa exonuclease-like 2
Authors:Yang, X.Y, Liu, X.H.
Deposit date:2022-08-21
Release date:2024-01-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Molecular mechanism of human ISG20L2 for the ITS1 cleavage in the processing of 18S precursor ribosomal RNA.
Nucleic Acids Res., 52, 2024
5Z9X
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BU of 5z9x by Molmil
Arabidopsis SMALL RNA DEGRADING NUCLEASE 1 in complex with an RNA substrate
Descriptor: MAGNESIUM ION, RNA (5'-R(P*GP*CP*CP*CP*AP*UP*UP*AP*G)-3'), SULFATE ION, ...
Authors:Chen, J, Liu, L, You, C, Gu, J, Ruan, W, Zhang, L, Gan, J, Cao, C, Huang, Y, Chen, X, Ma, J.
Deposit date:2018-02-05
Release date:2018-06-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural and biochemical insights into small RNA 3' end trimming by Arabidopsis SDN1.
Nat Commun, 9, 2018
4KAZ
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BU of 4kaz by Molmil
Crystal structure of RNase T in complex with a Y structured DNA
Descriptor: DNA (5'-D(*TP*TP*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*CP*C)-3'), MAGNESIUM ION, Ribonuclease T
Authors:Hsiao, Y.-Y, Yuan, H.S.
Deposit date:2013-04-23
Release date:2014-03-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways.
Plos Biol., 12, 2014
4KB1
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BU of 4kb1 by Molmil
Crystal structure of RNase T in complex with a bluge DNA (two nucleotide insertion CT )
Descriptor: Bulge DNA, MAGNESIUM ION, Ribonuclease T
Authors:Hsiao, Y.-Y, Yuan, H.S.
Deposit date:2013-04-23
Release date:2014-03-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways.
Plos Biol., 12, 2014
6A46
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BU of 6a46 by Molmil
Structure of TREX2 in complex with a nucleotide (dCMP)
Descriptor: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE, CALCIUM ION, MAGNESIUM ION, ...
Authors:Hsiao, Y.Y.
Deposit date:2018-06-19
Release date:2018-11-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insights into the duplex DNA processing of TREX2
Nucleic Acids Res., 46, 2018
6A4B
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BU of 6a4b by Molmil
Structure of TREX2 in complex with a duplex DNA with 2 nucleotide 3'-overhang
Descriptor: DNA (5'-D(*GP*GP*CP*CP*CP*TP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3'), MAGNESIUM ION, Three prime repair exonuclease 2
Authors:Hsiao, Y.Y.
Deposit date:2018-06-19
Release date:2018-11-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural insights into the duplex DNA processing of TREX2
Nucleic Acids Res., 46, 2018
4KB0
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BU of 4kb0 by Molmil
Crystal structure of RNase T in complex with a bluge DNA (Two nucleotide insertion CC )
Descriptor: DNA (5'-D(*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*CP*C)-3'), MAGNESIUM ION, Ribonuclease T
Authors:Hsiao, Y.-Y, Yuan, H.S.
Deposit date:2013-04-23
Release date:2014-03-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.004 Å)
Cite:Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways.
Plos Biol., 12, 2014
6A47
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BU of 6a47 by Molmil
Structure of TREX2 in complex with a Y structured dsDNA
Descriptor: DNA (5'-D(P*CP*CP*AP*GP*GP*CP*CP*CP*TP*CP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3'), MAGNESIUM ION, SODIUM ION, ...
Authors:Hsiao, Y.Y.
Deposit date:2018-06-19
Release date:2018-11-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural insights into the duplex DNA processing of TREX2
Nucleic Acids Res., 46, 2018
6A4E
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BU of 6a4e by Molmil
Two linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H
Descriptor: Oligoribonuclease, RNA (5'-R(P*UP*UP*UP*UP*U)-3')
Authors:Lee, C.W, Park, S, Lee, J.H.
Deposit date:2018-06-19
Release date:2019-03-13
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H.
Sci Rep, 9, 2019
6A4D
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BU of 6a4d by Molmil
pNP-TMP bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H
Descriptor: 5'-O-[(S)-hydroxy(4-nitrophenoxy)phosphoryl]thymidine, Oligoribonuclease
Authors:Lee, C.W, Park, S, Lee, J.H.
Deposit date:2018-06-19
Release date:2019-03-13
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H.
Sci Rep, 9, 2019
6A4A
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BU of 6a4a by Molmil
Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H
Descriptor: MAGNESIUM ION, Oligoribonuclease
Authors:Lee, C.W, Park, S, Lee, J.H.
Deposit date:2018-06-19
Release date:2019-03-13
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H.
Sci Rep, 9, 2019
6A45
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BU of 6a45 by Molmil
Structure of mouse TREX2
Descriptor: PHOSPHATE ION, Three prime repair exonuclease 2
Authors:Hsiao, Y.Y.
Deposit date:2018-06-19
Release date:2018-11-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.904 Å)
Cite:Structural insights into the duplex DNA processing of TREX2
Nucleic Acids Res., 46, 2018
6A4F
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BU of 6a4f by Molmil
Separated uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H
Descriptor: MANGANESE (II) ION, Oligoribonuclease, URIDINE-5'-MONOPHOSPHATE
Authors:Lee, C.W, Park, S, Lee, J.H.
Deposit date:2018-06-19
Release date:2019-03-13
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H.
Sci Rep, 9, 2019
6RCI
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BU of 6rci by Molmil
Crystal structure of REXO2
Descriptor: Oligoribonuclease, mitochondrial
Authors:Spahr, H, Nicholls, T.J, Larsson, N.G, Gustafsson, C.M.
Deposit date:2019-04-11
Release date:2019-10-09
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Dinucleotide Degradation by REXO2 Maintains Promoter Specificity in Mammalian Mitochondria.
Mol.Cell, 76, 2019
6N6D
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BU of 6n6d by Molmil
Vibrio cholerae Oligoribonuclease bound to pAG
Descriptor: Oligoribonuclease, RNA (5'-R(P*AP*G)-3'), SODIUM ION
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2018-11-26
Release date:2019-06-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.534 Å)
Cite:A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation.
Elife, 8, 2019
6N6K
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BU of 6n6k by Molmil
Human REXO2 bound to pAG
Descriptor: MALONATE ION, RNA (5'-R(P*AP*G)-3'), RNA exonuclease 2 homolog,Small fragment nuclease, ...
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2018-11-26
Release date:2019-06-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.418 Å)
Cite:A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation.
Elife, 8, 2019
6RCN
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BU of 6rcn by Molmil
Crystal structure of REXO2-D199A-dAdA
Descriptor: DNA (5'-D(P*AP*A)-3'), MAGNESIUM ION, Oligoribonuclease, ...
Authors:Spahr, H, Nicholls, T.J, Larsson, N.G, Gustafsson, C.M.
Deposit date:2019-04-11
Release date:2019-10-09
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Dinucleotide Degradation by REXO2 Maintains Promoter Specificity in Mammalian Mitochondria.
Mol.Cell, 76, 2019
6RCL
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BU of 6rcl by Molmil
Crystal structure of REXO2-D199A-AA
Descriptor: MAGNESIUM ION, Oligoribonuclease, mitochondrial, ...
Authors:Spahr, H, Nicholls, T.J, Larsson, N.G, Gustafsson, C.M.
Deposit date:2019-04-11
Release date:2019-10-09
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Dinucleotide Degradation by REXO2 Maintains Promoter Specificity in Mammalian Mitochondria.
Mol.Cell, 76, 2019
6N6F
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BU of 6n6f by Molmil
Vibrio cholerae Oligoribonuclease bound to pGC
Descriptor: Oligoribonuclease, RNA (5'-R(P*GP*C)-3'), SODIUM ION
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2018-11-26
Release date:2019-06-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.735 Å)
Cite:A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation.
Elife, 8, 2019
6N6J
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BU of 6n6j by Molmil
Human REXO2 bound to pAA
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, MALONATE ION, ...
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2018-11-26
Release date:2019-06-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.317 Å)
Cite:A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation.
Elife, 8, 2019
6N6C
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BU of 6n6c by Molmil
Vibrio cholerae Oligoribonuclease bound to pAA
Descriptor: RNA (5'-R(P*AP*A)-3'), RNA exonuclease 2 homolog,Small fragment nuclease, SODIUM ION
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2018-11-26
Release date:2019-06-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.619 Å)
Cite:A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation.
Elife, 8, 2019
6N6H
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BU of 6n6h by Molmil
Vibrio cholerae Oligoribonuclease bound to pCpU
Descriptor: Oligoribonuclease, RNA (5'-R(P*CP*U)-3'), SODIUM ION
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2018-11-26
Release date:2019-06-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.757 Å)
Cite:A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation.
Elife, 8, 2019

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数据于2024-05-15公开中

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