PDB: 113 件ウェブページステータス検索Chemie searchBIRD

---

7WIK	Crystal structure of oligoribonuclease of Mycobacterium smegmatis mc2 155 分子名称: ACETATE ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... 著者 Badhwar, P, Taneja, B. 登録日 2022-01-03 公開日 2022-12-21 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.87 Å) 主引用文献 Three-dimensional structure of a mycobacterial oligoribonuclease reveals a unique C-terminal tail that stabilizes the homodimer. J.Biol.Chem., 298, 2022
7N8W	Crystal structure of ERI2 nuclease bound to rAMP 分子名称: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, ERI1 exoribonuclease 2, ... 著者 Thapar, R, Arvai, A.S, Tainer, J.A. 登録日 2021-06-15 公開日 2022-07-06 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Crystal structure of ERI2 nuclease bound to rAMP To Be Published
7N8V	Crystal structure of free ERI2 nuclease 分子名称: ERI1 exoribonuclease 2, SULFATE ION 著者 Thapar, R, Arvai, A.S, Tainer, J.A. 登録日 2021-06-15 公開日 2022-07-06 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of free ERI2 nuclease To Be Published
7YW5	Crystal Structure of the ITS1 processing by human ribonuclease ISG20L2 with mutation D327A 分子名称: Interferon-stimulated 20 kDa exonuclease-like 2 著者 Yang, X.Y, Liu, X.H. 登録日 2022-08-21 公開日 2024-01-17 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.77 Å) 主引用文献 Molecular mechanism of human ISG20L2 for the ITS1 cleavage in the processing of 18S precursor ribosomal RNA. Nucleic Acids Res., 52, 2024
5Z9X	Arabidopsis SMALL RNA DEGRADING NUCLEASE 1 in complex with an RNA substrate 分子名称: MAGNESIUM ION, RNA (5'-R(P*GP*CP*CP*CP*AP*UP*UP*AP*G)-3'), SULFATE ION, ... 著者 Chen, J, Liu, L, You, C, Gu, J, Ruan, W, Zhang, L, Gan, J, Cao, C, Huang, Y, Chen, X, Ma, J. 登録日 2018-02-05 公開日 2018-06-27 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural and biochemical insights into small RNA 3' end trimming by Arabidopsis SDN1. Nat Commun, 9, 2018
4KAZ	Crystal structure of RNase T in complex with a Y structured DNA 分子名称: DNA (5'-D(*TP*TP*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*CP*C)-3'), MAGNESIUM ION, Ribonuclease T 著者 Hsiao, Y.-Y, Yuan, H.S. 登録日 2013-04-23 公開日 2014-03-05 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways. Plos Biol., 12, 2014
4KB1	Crystal structure of RNase T in complex with a bluge DNA (two nucleotide insertion CT ) 分子名称: Bulge DNA, MAGNESIUM ION, Ribonuclease T 著者 Hsiao, Y.-Y, Yuan, H.S. 登録日 2013-04-23 公開日 2014-03-05 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways. Plos Biol., 12, 2014
6A46	Structure of TREX2 in complex with a nucleotide (dCMP) 分子名称: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE, CALCIUM ION, MAGNESIUM ION, ... 著者 Hsiao, Y.Y. 登録日 2018-06-19 公開日 2018-11-07 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural insights into the duplex DNA processing of TREX2 Nucleic Acids Res., 46, 2018
6A4B	Structure of TREX2 in complex with a duplex DNA with 2 nucleotide 3'-overhang 分子名称: DNA (5'-D(*GP*GP*CP*CP*CP*TP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3'), MAGNESIUM ION, Three prime repair exonuclease 2 著者 Hsiao, Y.Y. 登録日 2018-06-19 公開日 2018-11-07 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural insights into the duplex DNA processing of TREX2 Nucleic Acids Res., 46, 2018
4KB0	Crystal structure of RNase T in complex with a bluge DNA (Two nucleotide insertion CC ) 分子名称: DNA (5'-D(*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*CP*C)-3'), MAGNESIUM ION, Ribonuclease T 著者 Hsiao, Y.-Y, Yuan, H.S. 登録日 2013-04-23 公開日 2014-03-05 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.004 Å) 主引用文献 Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways. Plos Biol., 12, 2014
6A47	Structure of TREX2 in complex with a Y structured dsDNA 分子名称: DNA (5'-D(P*CP*CP*AP*GP*GP*CP*CP*CP*TP*CP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3'), MAGNESIUM ION, SODIUM ION, ... 著者 Hsiao, Y.Y. 登録日 2018-06-19 公開日 2018-11-07 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural insights into the duplex DNA processing of TREX2 Nucleic Acids Res., 46, 2018
6A4E	Two linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H 分子名称: Oligoribonuclease, RNA (5'-R(P*UP*UP*UP*UP*U)-3') 著者 Lee, C.W, Park, S, Lee, J.H. 登録日 2018-06-19 公開日 2019-03-13 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H. Sci Rep, 9, 2019
6A4D	pNP-TMP bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H 分子名称: 5'-O-[(S)-hydroxy(4-nitrophenoxy)phosphoryl]thymidine, Oligoribonuclease 著者 Lee, C.W, Park, S, Lee, J.H. 登録日 2018-06-19 公開日 2019-03-13 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.19 Å) 主引用文献 Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H. Sci Rep, 9, 2019
6A4A	Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H 分子名称: MAGNESIUM ION, Oligoribonuclease 著者 Lee, C.W, Park, S, Lee, J.H. 登録日 2018-06-19 公開日 2019-03-13 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H. Sci Rep, 9, 2019
6A45	Structure of mouse TREX2 分子名称: PHOSPHATE ION, Three prime repair exonuclease 2 著者 Hsiao, Y.Y. 登録日 2018-06-19 公開日 2018-11-07 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.904 Å) 主引用文献 Structural insights into the duplex DNA processing of TREX2 Nucleic Acids Res., 46, 2018
6A4F	Separated uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H 分子名称: MANGANESE (II) ION, Oligoribonuclease, URIDINE-5'-MONOPHOSPHATE 著者 Lee, C.W, Park, S, Lee, J.H. 登録日 2018-06-19 公開日 2019-03-13 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.21 Å) 主引用文献 Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H. Sci Rep, 9, 2019
6RCI	Crystal structure of REXO2 分子名称: Oligoribonuclease, mitochondrial 著者 Spahr, H, Nicholls, T.J, Larsson, N.G, Gustafsson, C.M. 登録日 2019-04-11 公開日 2019-10-09 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Dinucleotide Degradation by REXO2 Maintains Promoter Specificity in Mammalian Mitochondria. Mol.Cell, 76, 2019
6N6D	Vibrio cholerae Oligoribonuclease bound to pAG 分子名称: Oligoribonuclease, RNA (5'-R(P*AP*G)-3'), SODIUM ION 著者 Lormand, J.D, Sondermann, H. 登録日 2018-11-26 公開日 2019-06-12 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.534 Å) 主引用文献 A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6K	Human REXO2 bound to pAG 分子名称: MALONATE ION, RNA (5'-R(P*AP*G)-3'), RNA exonuclease 2 homolog,Small fragment nuclease, ... 著者 Lormand, J.D, Sondermann, H. 登録日 2018-11-26 公開日 2019-06-12 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.418 Å) 主引用文献 A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6RCN	Crystal structure of REXO2-D199A-dAdA 分子名称: DNA (5'-D(P*AP*A)-3'), MAGNESIUM ION, Oligoribonuclease, ... 著者 Spahr, H, Nicholls, T.J, Larsson, N.G, Gustafsson, C.M. 登録日 2019-04-11 公開日 2019-10-09 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Dinucleotide Degradation by REXO2 Maintains Promoter Specificity in Mammalian Mitochondria. Mol.Cell, 76, 2019
6RCL	Crystal structure of REXO2-D199A-AA 分子名称: MAGNESIUM ION, Oligoribonuclease, mitochondrial, ... 著者 Spahr, H, Nicholls, T.J, Larsson, N.G, Gustafsson, C.M. 登録日 2019-04-11 公開日 2019-10-09 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (1.97 Å) 主引用文献 Dinucleotide Degradation by REXO2 Maintains Promoter Specificity in Mammalian Mitochondria. Mol.Cell, 76, 2019
6N6F	Vibrio cholerae Oligoribonuclease bound to pGC 分子名称: Oligoribonuclease, RNA (5'-R(P*GP*C)-3'), SODIUM ION 著者 Lormand, J.D, Sondermann, H. 登録日 2018-11-26 公開日 2019-06-12 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.735 Å) 主引用文献 A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6J	Human REXO2 bound to pAA 分子名称: 1,2-ETHANEDIOL, GLYCEROL, MALONATE ION, ... 著者 Lormand, J.D, Sondermann, H. 登録日 2018-11-26 公開日 2019-06-12 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.317 Å) 主引用文献 A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6C	Vibrio cholerae Oligoribonuclease bound to pAA 分子名称: RNA (5'-R(P*AP*A)-3'), RNA exonuclease 2 homolog,Small fragment nuclease, SODIUM ION 著者 Lormand, J.D, Sondermann, H. 登録日 2018-11-26 公開日 2019-06-12 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.619 Å) 主引用文献 A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6H	Vibrio cholerae Oligoribonuclease bound to pCpU 分子名称: Oligoribonuclease, RNA (5'-R(P*CP*U)-3'), SODIUM ION 著者 Lormand, J.D, Sondermann, H. 登録日 2018-11-26 公開日 2019-06-12 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.757 Å) 主引用文献 A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019

<12345>