PDB: 215 resultsInfo pagesStatus searchChemie searchBIRD

---

4RN5	B1 domain of human Neuropilin-1 with acetate ion in a ligand-binding site Descriptor: ACETATE ION, GLYCEROL, Neuropilin-1, ... Authors: Allerston, C.K, Yelland, T.S, Jarvis, A, Jenkins, K, Winfield, N, Cheng, L, Jia, H, Zachary, I, Selwood, D.L, Djordjevic, S. Deposit date: 2014-10-23 Release date: 2015-10-28 Method: X-RAY DIFFRACTION (1.73 Å) Cite: Conserved water molecules in a ligand-binding site of neuropilin-1 To be Published
3I97	B1 domain of human Neuropilin-1 bound with small molecule EG00229 Descriptor: (S)-2-(3-(benzo[c][1,2,5]thiadiazole-4-sulfonamido)thiophene-2-carboxamido)-5-guanidinopentanoic acid, GLYCEROL, Neuropilin-1 Authors: Allerston, C.K, Djordjevic, S. Deposit date: 2009-07-10 Release date: 2010-03-02 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Small molecule inhibitors of the neuropilin-1 vascular endothelial growth factor A (VEGF-A) interaction. J.Med.Chem., 53, 2010
3HNB	Factor VIII Trp2313-His2315 segment is involved in membrane binding as shown by crystal structure of complex between factor VIII C2 domain and an inhibitor Descriptor: (2R)-1-(2,4-dichlorophenoxy)-3-[(2E)-2-imino-3-(2-piperidin-1-ylethyl)-2,3-dihydro-1H-benzimidazol-1-yl]propan-2-ol, Coagulation factor VIII Authors: Liu, Z, Yuan, C. Deposit date: 2009-05-31 Release date: 2010-01-19 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.15 Å) Cite: Trp2313-His2315 of factor VIII C2 domain is involved in membrane binding: structure of a complex between the C2 domain and an inhibitor of membrane binding. J.Biol.Chem., 285, 2010
3HNY	Factor VIII Trp2313-His2315 segment is involved in membrane binding as shown by crystal structure of complex between factor VIII C2 domain and an inhibitor Descriptor: Coagulation factor VIII Authors: Liu, Z, Yuan, C. Deposit date: 2009-06-01 Release date: 2010-01-19 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.07 Å) Cite: Trp2313-His2315 of factor VIII C2 domain is involved in membrane binding: structure of a complex between the C2 domain and an inhibitor of membrane binding. J.Biol.Chem., 285, 2010
3JD6	Double octamer structure of retinoschisin, a cell-cell adhesion protein of the retina Descriptor: Retinoschisin Authors: Tolun, G, Vijayasarathy, C, Huang, R, Zeng, Y, Li, Y, Steven, A.C, Sieving, P.A, Heymann, J.B. Deposit date: 2016-04-12 Release date: 2016-05-11 Last modified: 2018-07-18 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Paired octamer rings of retinoschisin suggest a junctional model for cell-cell adhesion in the retina. Proc.Natl.Acad.Sci.USA, 113, 2016
3HNM	Crystal Structure of Protein BT_411 (putative chitobiase, fragment 298-461) from Bacteroides thetaiotaomicron, Northeast Structural Genomics Consortium Target BtR319D Descriptor: MAGNESIUM ION, Putative chitobiase Authors: Kuzin, A, Abashidze, M, Seetharaman, J, Sahdev, S, Xiao, R, Ciccosanti, C, Foote, E.L, Lee, D, Everett, J.K, Nair, R, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG) Deposit date: 2009-05-31 Release date: 2009-07-07 Last modified: 2019-07-24 Method: X-RAY DIFFRACTION (3 Å) Cite: Northeast Structural Genomics Consortium Target BtR319D To be published
3HOB	Factor VIII Trp2313-His2315 segment is involved in membrane binding as shown by crystal structure of complex between factor VIII C2 domain and an inhibitor Descriptor: Coagulation factor VIII Authors: Liu, Z, Yuan, C. Deposit date: 2009-06-01 Release date: 2010-01-19 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.07 Å) Cite: Trp2313-His2315 of factor VIII C2 domain is involved in membrane binding: structure of a complex between the C2 domain and an inhibitor of membrane binding. J.Biol.Chem., 285, 2010
4A45	CpGH89CBM32-5, from Clostridium perfringens, in complex with GalNAc- beta-1,3-galactose Descriptor: 2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-beta-D-galactopyranose, ALPHA-N-ACETYLGLUCOSAMINIDASE FAMILY PROTEIN, CALCIUM ION, ... Authors: Ficko-Blean, E, Stuart, C.P, Suits, M.D, Cid, M, Tessier, M, Woods, R.J, Boraston, A.B. Deposit date: 2011-10-06 Release date: 2012-04-04 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Carbohydrate Recognition by an Architecturally Complex Alpha-N-Acetylglucosaminidase from Clostridium Perfringens. Plos One, 7, 2012
4A41	CpGH89CBM32-5, from Clostridium perfringens, in complex with galactose Descriptor: ALPHA-N-ACETYLGLUCOSAMINIDASE FAMILY PROTEIN, CALCIUM ION, SODIUM ION, ... Authors: Ficko-Blean, E, Stuart, C.P, Suits, M.D, Cid, M, Tessier, M, Woods, R.J, Boraston, A.B. Deposit date: 2011-10-06 Release date: 2012-04-04 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Carbohydrate Recognition by an Architecturally Complex Alpha-N-Acetylglucosaminidase from Clostridium Perfringens. Plos One, 7, 2012
4A44	CpGH89CBM32-5, from Clostridium perfringens, in complex with the Tn Antigen Descriptor: 2-acetamido-2-deoxy-alpha-D-galactopyranose, Alpha-N-acetylglucosaminidase, CALCIUM ION, ... Authors: Ficko-Blean, E, Stuart, C.P, Suits, M.D, Cid, M, Tessier, M, Woods, R.J, Boraston, A.B. Deposit date: 2011-10-06 Release date: 2012-04-04 Last modified: 2022-12-07 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Carbohydrate Recognition by an Architecturally Complex Alpha-N-Acetylglucosaminidase from Clostridium Perfringens. Plos One, 7, 2012
4AAX	CpGH89CBM32-5, from Clostridium perfringens, in complex with N- acetylgalactosamine Descriptor: 2-acetamido-2-deoxy-beta-D-galactopyranose, ALPHA-N-ACETYLGLUCOSAMINIDASE, CALCIUM ION, ... Authors: Ficko-Blean, E, Stuart, C.P, Suits, M.D, Cid, M, Tessier, M, Woods, R.J, Boraston, A.B. Deposit date: 2011-12-05 Release date: 2012-04-04 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Carbohydrate Recognition by an Architecturally Complex Alpha-N-Acetylglucosaminidase from Clostridium Perfringens. Plos One, 7, 2012
4A42	CpGH89CBM32-6 produced by Clostridium perfringens Descriptor: ALPHA-N-ACETYLGLUCOSAMINIDASE FAMILY PROTEIN, CALCIUM ION Authors: Ficko-Blean, E, Stuart, C.P, Suits, M.D, Cid, M, Tessier, M, Woods, R.J, Boraston, A.B. Deposit date: 2011-10-06 Release date: 2012-04-04 Last modified: 2012-04-18 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Carbohydrate Recognition by an Architecturally Complex Alpha-N-Acetylglucosaminidase from Clostridium Perfringens. Plos One, 7, 2012
7JNB	The structure of CBM32-1 and CBM32-2 domains from Clostridium perfringens ZmpB in complex with GalNAc Descriptor: 2-acetamido-2-deoxy-alpha-D-galactopyranose, CALCIUM ION, F5/8 type C domain protein, ... Authors: Pluvinage, B, Boraston, A.B. Deposit date: 2020-08-04 Release date: 2021-02-03 Last modified: 2021-08-18 Method: X-RAY DIFFRACTION (2 Å) Cite: Architecturally complex O -glycopeptidases are customized for mucin recognition and hydrolysis. Proc.Natl.Acad.Sci.USA, 118, 2021
7JND	The structure of CBM32-1 and CBM32-2 domains from Clostridium perfringens ZmpB Descriptor: CALCIUM ION, F5/8 type C domain protein, GLYCEROL Authors: Pluvinage, B, Boraston, A.B. Deposit date: 2020-08-04 Release date: 2021-02-03 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2 Å) Cite: Architecturally complex O -glycopeptidases are customized for mucin recognition and hydrolysis. Proc.Natl.Acad.Sci.USA, 118, 2021
7JNF	The structure of CBM32-1 and CBM32-2 domains from Clostridium perfringens ZmpB in complex with GalNAc Descriptor: 2-acetamido-2-deoxy-alpha-D-galactopyranose, CALCIUM ION, F5/8 type C domain protein, ... Authors: Pluvinage, B, Boraston, A.B. Deposit date: 2020-08-04 Release date: 2021-02-03 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Architecturally complex O -glycopeptidases are customized for mucin recognition and hydrolysis. Proc.Natl.Acad.Sci.USA, 118, 2021
7JJC	Crystal structure of neuropilin-1 b1 domain in complex with SARS-CoV-2 S1 C-end rule (CendR) peptide Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, Neuropilin-1, ... Authors: Chen, K.-E, Collins, B.M. Deposit date: 2020-07-25 Release date: 2020-10-28 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.36 Å) Cite: Neuropilin-1 is a host factor for SARS-CoV-2 infection. Science, 370, 2020
2J1T	Structure of a Streptococcus pneumoniae fucose binding module in complex with the Lewis Y antigen Descriptor: CALCIUM ION, FUCOLECTIN-RELATED PROTEIN, alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose Authors: Boraston, A.B, Wang, D, Burke, R.D. Deposit date: 2006-08-15 Release date: 2006-09-06 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Blood Group Antigen Recognition by a Streptococcus Pneumoniae Virulence Factor J.Biol.Chem., 281, 2006
2J7M	Characterization of a Family 32 CBM Descriptor: CALCIUM ION, HYALURONIDASE, alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose Authors: Ficko-Blean, E, Boraston, A.B. Deposit date: 2006-10-12 Release date: 2006-10-16 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (2.3 Å) Cite: The Interaction of a Carbohydrate-Binding Module from a Clostridium Perfringens N-Acetyl-Beta-Hexosaminidase with its Carbohydrate Receptor J.Biol.Chem., 281, 2006
2J1S	Structure of a Streptococcus pneumoniae fucose binding module in complex with fucose Descriptor: CALCIUM ION, FUCOLECTIN-RELATED PROTEIN, beta-L-fucopyranose Authors: Boraston, A.B, Wang, D, Burke, R.D. Deposit date: 2006-08-15 Release date: 2006-09-06 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Blood Group Antigen Recognition by a Streptococcus Pneumoniae Virulence Factor J.Biol.Chem., 281, 2006
2J22	Structure of a Streptococcus pneumoniae fucose binding module, SpX-3 Descriptor: CALCIUM ION, FUCOLECTIN-RELATED PROTEIN, GLYCEROL Authors: Boraston, A.B, Wang, D, Burke, R.D. Deposit date: 2006-08-15 Release date: 2006-09-06 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Blood Group Antigen Recognition by a Streptococcus Pneumoniae Virulence Factor J.Biol.Chem., 281, 2006
2J1A	Structure of CBM32 from Clostridium perfringens beta-N- acetylhexosaminidase GH84C in complex with galactose Descriptor: CALCIUM ION, HYALURONIDASE, beta-D-galactopyranose Authors: Ficko-Blean, E, Boraston, A.B. Deposit date: 2006-08-09 Release date: 2006-08-22 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (1.49 Å) Cite: The Interaction of a Carbohydrate-Binding Module from a Clostridium Perfringens N-Acetyl-Beta-Hexosaminidase with its Carbohydrate Receptor J.Biol.Chem., 281, 2006
2J1U	Structure of a Streptococcus pneumoniae fucose binding module in complex with the blood group A-tetrasaccharide Descriptor: CALCIUM ION, FUCOLECTIN-RELATED PROTEIN, alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]beta-D-galactopyranose-(1-4)-beta-D-glucopyranose Authors: Boraston, A.B, Wang, D, Burke, R.D. Deposit date: 2006-08-15 Release date: 2006-09-06 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Blood Group Antigen Recognition by a Streptococcus Pneumoniae Virulence Factor J.Biol.Chem., 281, 2006
2J1E	High Resolution Crystal Structure of CBM32 from a N-acetyl-beta- hexosaminidase in complex with lacNAc Descriptor: CALCIUM ION, HYALURONIDASE, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose Authors: Ficko-Blean, E, Boraston, A.B. Deposit date: 2006-08-10 Release date: 2006-09-20 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (2.4 Å) Cite: The Interaction of a Carbohydrate-Binding Module from a Clostridium Perfringens N-Acetyl-Beta-Hexosaminidase with its Carbohydrate Receptor J.Biol.Chem., 281, 2006
2J1R	Structure of a Streptococcus pneumoniae fucose binding module Descriptor: CALCIUM ION, FUCOLECTIN-RELATED PROTEIN Authors: Boraston, A.B, Wang, D, Burke, R.D. Deposit date: 2006-08-15 Release date: 2006-09-06 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.54 Å) Cite: Blood Group Antigen Recognition by a Streptococcus Pneumoniae Virulence Factor. J.Biol.Chem., 281, 2006
2J1V	Structure of a Streptococcus pneumoniae fucose binding module in complex with the blood group H-trisaccharide Descriptor: CALCIUM ION, FUCOLECTIN-RELATED PROTEIN, alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose Authors: Boraston, A.B, Wang, D, Burke, R.D. Deposit date: 2006-08-15 Release date: 2006-09-06 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Blood Group Antigen Recognition by a Streptococcus Pneumoniae Virulence Factor J.Biol.Chem., 281, 2006

<123456789>