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6QJI
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BU of 6qji by Molmil
Crystal Structure of the third PDZ domain of PSD-95 protein: space group P3112
Descriptor: Disks large homolog 4, SULFATE ION
Authors:Camara-Artigas, A.
Deposit date:2019-01-24
Release date:2019-04-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Conformational changes in the third PDZ domain of the neuronal postsynaptic density protein 95.
Acta Crystallogr D Struct Biol, 75, 2019
7JZP
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BU of 7jzp by Molmil
CFTR Associated Ligand (CAL) PDZ domain bound to peptidomimetic LyCALBF
Descriptor: 1-benzofuran-2-carboxylic acid, Golgi-associated PDZ and coiled-coil motif-containing protein, LyCALBF peptide core
Authors:Gill, N.P, Madden, D.R.
Deposit date:2020-09-02
Release date:2022-02-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:CFTR Associated Ligand (CAL) PDZ domain bound to peptidomimetic LyCALBF
To Be Published
6AK2
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BU of 6ak2 by Molmil
Crystal structure of the syntenin PDZ1 domain in complex with the peptide inhibitor KSL-128018
Descriptor: Syntenin-1, peptide inhibitor KSL-128018
Authors:Jin, Z.Y, Park, J.H, Yun, J.H, Haugaard-Kedstrom, L.M, Lee, W.T.
Deposit date:2018-08-29
Release date:2019-09-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.868 Å)
Cite:A High-Affinity Peptide Ligand Targeting Syntenin Inhibits Glioblastoma.
J.Med.Chem., 64, 2021
7JO7
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BU of 7jo7 by Molmil
Crystal Structure of Human Scribble PDZ2
Descriptor: 1,2-ETHANEDIOL, Protein scribble homolog
Authors:How, J.Y, Kvansakul, M.
Deposit date:2020-08-06
Release date:2021-03-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Structural basis of the human Scribble-Vangl2 association in health and disease.
Biochem.J., 478, 2021
5WOU
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BU of 5wou by Molmil
Crystal Structure of drosophila melanogaster Scribble PDZ1 domain in complex with Guk-Holder
Descriptor: 1,2-ETHANEDIOL, GUK-holder, isoform A, ...
Authors:Caria, S, Kvansakul, M.
Deposit date:2017-08-03
Release date:2018-02-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Drosophila melanogasterGuk-holder interacts with the Scribbled PDZ1 domain and regulates epithelial development with Scribbled and Discs Large.
J. Biol. Chem., 293, 2018
6BXG
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BU of 6bxg by Molmil
1.45 Angstrom Resolution Crystal Structure of PDZ domain of Carboxy-Terminal Protease from Vibrio cholerae in Complex with Peptide.
Descriptor: CHLORIDE ION, IODIDE ION, LEU-ILE-ALA, ...
Authors:Minasov, G, Shuvalova, L, Filippova, E.V, Kiryukhina, O, Grimshaw, S, Kwon, K, Anderson, W.F, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2017-12-18
Release date:2018-01-03
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:1.45 Angstrom Resolution Crystal Structure of PDZ domain of Carboxy-Terminal Protease from Vibrio cholerae in Complex with Peptide.
To Be Published
6BJO
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BU of 6bjo by Molmil
PICK1 PDZ domain in complex with the small molecule inhibitor BIO124.
Descriptor: (2S)-({4-(4-bromophenyl)-1-[1-(tert-butoxycarbonyl)-L-prolyl]piperidine-4-carbonyl}amino)(cyclopentyl)acetic acid, PRKCA-binding protein
Authors:Marcotte, D.J.
Deposit date:2017-11-06
Release date:2018-01-10
Last modified:2018-02-28
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Lock and chop: A novel method for the generation of a PICK1 PDZ domain and piperidine-based inhibitor co-crystal structure.
Protein Sci., 27, 2018
6BJN
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BU of 6bjn by Molmil
PICK1 PDZ domain in complex with the class I PDZ binding motif QSAV
Descriptor: PRKCA-binding protein
Authors:Marcotte, D.J.
Deposit date:2017-11-06
Release date:2018-01-10
Last modified:2018-02-28
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Lock and chop: A novel method for the generation of a PICK1 PDZ domain and piperidine-based inhibitor co-crystal structure.
Protein Sci., 27, 2018
5VWK
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BU of 5vwk by Molmil
Crystal structure of human Scribble PDZ1:Beta-PIX complex
Descriptor: Beta-PIX, Protein scribble homolog, SULFATE ION
Authors:Lim, K.Y.B, Kvansakul, M.
Deposit date:2017-05-22
Release date:2017-11-08
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural basis for the differential interaction of Scribble PDZ domains with the guanine nucleotide exchange factor beta-PIX.
J. Biol. Chem., 292, 2017
5VWI
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BU of 5vwi by Molmil
Crystal structure of human Scribble PDZ1:Beta-PIX complex
Descriptor: Protein scribble homolog, beta-PIX
Authors:Lim, K.Y.B, Kvansakul, M.
Deposit date:2017-05-22
Release date:2017-11-08
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural basis for the differential interaction of Scribble PDZ domains with the guanine nucleotide exchange factor beta-PIX.
J. Biol. Chem., 292, 2017
6AR4
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BU of 6ar4 by Molmil
Crystal structure of PICK1 in complex with the small molecule inhibitor 1o
Descriptor: N-[4-(4-bromophenyl)-1-{[2-(trifluoromethyl)phenyl]methyl}piperidine-4-carbonyl]-3-cyclopropyl-L-alanine, PRKCA-binding protein
Authors:Marcotte, D.
Deposit date:2017-08-21
Release date:2018-08-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Potent PDZ-Domain PICK1 Inhibitors that Modulate Amyloid Beta-Mediated Synaptic Dysfunction.
Sci Rep, 8, 2018
5VWC
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BU of 5vwc by Molmil
Crystal structure of human Scribble PDZ1 domain
Descriptor: 1,2-ETHANEDIOL, Protein scribble homolog
Authors:Lim, K.Y.B, Kvansakul, M.
Deposit date:2017-05-21
Release date:2017-11-08
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.911 Å)
Cite:Structural basis for the differential interaction of Scribble PDZ domains with the guanine nucleotide exchange factor beta-PIX.
J. Biol. Chem., 292, 2017
5W72
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BU of 5w72 by Molmil
Impact of IR active probes on PDZ3 and its ligand binding studied by NMR and X-ray crystallography
Descriptor: Disks large homolog 4
Authors:Lehner, F, Kudlinzki, D, Schwalbe, H, Silvers, R.
Deposit date:2017-06-19
Release date:2017-12-13
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:Impact of Azidohomoalanine Incorporation on Protein Structure and Ligand Binding.
Chembiochem, 18, 2017
7LUL
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BU of 7lul by Molmil
Structure of the MM2 Erbin PDZ variant in complex with a high-affinity peptide
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, ...
Authors:Singer, A.U, Teyra, J, McLaughlin, M, Ernst, A, Sicheri, F, Sidhu, S.S.
Deposit date:2021-02-22
Release date:2021-07-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Comprehensive Assessment of the Relationship Between Site -2 Specificity and Helix alpha 2 in the Erbin PDZ Domain.
J.Mol.Biol., 433, 2021
3VQF
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BU of 3vqf by Molmil
Crystal Structure Analysis of the PDZ Domain Derived from the Tight Junction Regulating Protein
Descriptor: E3 ubiquitin-protein ligase LNX
Authors:Akiyoshi, Y, Hamada, D, Goda, N, Tenno, T, Narita, H, Nakagawa, A, Furuse, M, Suzuki, M, Hiroaki, H.
Deposit date:2012-03-22
Release date:2013-03-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.199 Å)
Cite:Structural basis for down regulation of tight junction by PDZ-domain containing E3-Ubiquitin ligase
To be Published
3VQG
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BU of 3vqg by Molmil
Crystal Structure Analysis of the PDZ Domain Derived from the Tight Junction Regulating Protein
Descriptor: C-terminal peptide from Immunoglobulin superfamily member 5, E3 ubiquitin-protein ligase LNX, SULFATE ION
Authors:Akiyoshi, Y, Hamada, D, Goda, N, Tenno, T, Narita, H, Nakagawa, A, Furuse, M, Suzuki, M, Hiroaki, H.
Deposit date:2012-03-23
Release date:2013-03-27
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural basis for down regulation of tight junction by PDZ-domain containing E3-Ubiquitin ligase
To be Published
3ZRT
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BU of 3zrt by Molmil
Crystal structure of human PSD-95 PDZ1-2
Descriptor: DISKS LARGE HOMOLOG 4
Authors:Sorensen, P.L, Kastrup, J.S, Gajhede, M.
Deposit date:2011-06-19
Release date:2012-03-21
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.398 Å)
Cite:A High-Affinity, Dimeric Inhibitor of Psd-95 Bivalently Interacts with Pdz1-2 and Protects Against Ischemic Brain Damage.
Proc.Natl.Acad.Sci.USA, 109, 2012
4AMH
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BU of 4amh by Molmil
Influence of circular permutation on the folding pathway of a PDZ domain
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DISKS LARGE HOMOLOG 1, GLYCEROL
Authors:Hultqvist, G, Punekar, A.S, Chi, C.N, Selmer, M, Gianni, S, Jemth, P.
Deposit date:2012-03-10
Release date:2012-12-05
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Tolerance of Protein Folding to a Circular Permutation in a Pdz Domain
Plos One, 7, 2012
6HKS
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BU of 6hks by Molmil
Crystal structure of the PTPN3 PDZ domain bound to the HPV16 E6 oncoprotein C-terminal peptide
Descriptor: IODIDE ION, Protein E6, Tyrosine-protein phosphatase non-receptor type 3
Authors:Genera, M, Haouz, A, Caillet-Saguy, C.
Deposit date:2018-09-07
Release date:2019-05-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.1944108 Å)
Cite:Structural and functional characterization of the PDZ domain of the human phosphatase PTPN3 and its interaction with the human papillomavirus E6 oncoprotein.
Sci Rep, 9, 2019
2YT8
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BU of 2yt8 by Molmil
Solution structure of the PDZ domain of Amyloid beta A4 precursor protein-binding family A member 3 (Neuron- specific X11L2 protein) (Neuronal Munc18-1-interacting protein 3) (Mint-3) (Adapter protein X11gamma)
Descriptor: Amyloid beta A4 precursor protein-binding family A member 3
Authors:Dang, W, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Tarada, T, Seiki, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-05
Release date:2008-04-08
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of the PDZ domain of Amyloid beta A4 precursor protein-binding family A member 3 (Neuron- specific X11L2 protein) (Neuronal Munc18-1-interacting protein 3) (Mint-3) (Adapter protein X11gamma)
To be Published
2Z17
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BU of 2z17 by Molmil
Crystal structure of PDZ domain from human Pleckstrin homology, Sec7
Descriptor: Pleckstrin homology Sec7 and coiled-coil domains-binding protein
Authors:Kishishita, S, Nishino, A, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-08
Release date:2008-05-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of PDZ domain from human Pleckstrin homology, Sec7
To be Published
6JUE
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BU of 6jue by Molmil
The complex of PDZ and PBM
Descriptor: Partitioning defective 3 homolog, SULFATE ION, THR-ILE-ILE-THR-LEU
Authors:Liu, Z.
Deposit date:2019-04-13
Release date:2020-04-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.549 Å)
Cite:Par complex cluster formation mediated by phase separation.
Nat Commun, 11, 2020
2YUB
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BU of 2yub by Molmil
Solution structure of the PDZ domain from mouse LIM domain kinase
Descriptor: LIM domain kinase 2
Authors:Hayashi, F, Suetake, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-06
Release date:2008-04-08
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of the PDZ domain from mouse LIM domain kinase
To be Published
4G69
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BU of 4g69 by Molmil
Structure of the Human Discs Large 1 PDZ2 - Adenomatous Polyposis Coli Cytoskeletal Polarity Complex
Descriptor: Adenomatous polyposis coli protein, Disks large homolog 1
Authors:Slep, K.C.
Deposit date:2012-07-18
Release date:2012-12-12
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the Human Discs Large 1 PDZ2- Adenomatous Polyposis Coli Cytoskeletal Polarity Complex: Insight into Peptide Engagement and PDZ Clustering.
Plos One, 7, 2012
2YT7
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BU of 2yt7 by Molmil
Solution structure of the PDZ domain of Amyloid beta A4 precursor protein-binding family A member 3
Descriptor: Amyloid beta A4 precursor protein-binding family A member 3
Authors:Dang, W, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Tarada, T, Seiki, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-05
Release date:2008-04-15
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:Solution structure of the PDZ domain of Amyloid beta A4 precursor protein-binding family A member 3
To be Published

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