PDB: 605 件ウェブページステータス検索Chemie searchBIRD

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2DSD	Crystal structure of human ADP-ribose pyrophosphatase NUDT5 in complex with magnesium and AMP 分子名称: ADENOSINE MONOPHOSPHATE, ADP-sugar pyrophosphatase, MAGNESIUM ION 著者 Zha, M, Zhong, C, Ding, J. 登録日 2006-06-28 公開日 2006-11-14 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal Structures of Human NUDT5 Reveal Insights into the Structural Basis of the Substrate Specificity J.Mol.Biol., 364, 2006
3A6T	Crystal structure of MutT-8-OXO-DGMP complex 分子名称: 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, Mutator mutT protein, SODIUM ION, ... 著者 Nakamura, T, Yamagata, Y. 登録日 2009-09-09 公開日 2009-10-27 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base J.Biol.Chem., 285, 2010
3ACA	Crystal structure of human NUDT5 complexed with 8-oxo-dADP and manganese 分子名称: 8-oxo-7,8-dihydro-2'-deoxy-adenosine-5'-diphosphate, ADP-sugar pyrophosphatase, MANGANESE (II) ION 著者 Arimori, T, Yamagata, Y. 登録日 2009-12-30 公開日 2011-01-12 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Diverse substrate recognition and hydrolysis mechanisms of human NUDT5 Nucleic Acids Res., 39, 2011
3A6U	Crystal structure of MutT-8-OXO-dGMP-MN(II) complex 分子名称: 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE, MANGANESE (II) ION, Mutator mutT protein, ... 著者 Nakamura, T, Yamagata, Y. 登録日 2009-09-09 公開日 2009-10-27 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.56 Å) 主引用文献 Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base J.Biol.Chem., 285, 2010
3A6S	Crystal structure of the MutT protein 分子名称: L(+)-TARTARIC ACID, Mutator mutT protein, SODIUM ION 著者 Nakamura, T, Yamagata, Y. 登録日 2009-09-09 公開日 2009-10-27 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base J.Biol.Chem., 285, 2010
3AC9	Crystal structure of human NUDT5 complexed with 8-oxo-dGDP and manganese 分子名称: 2'-deoxy-8-oxoguanosine 5'-(trihydrogen diphosphate), ADP-sugar pyrophosphatase, MANGANESE (II) ION 著者 Arimori, T, Yamagata, Y. 登録日 2009-12-30 公開日 2011-01-12 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Diverse substrate recognition and hydrolysis mechanisms of human NUDT5 Nucleic Acids Res., 39, 2011
2FKB	Crystal structure of a putative enzyme (possible Nudix hydrolase) from Escherichia Coli K12 分子名称: ACETATE ION, GLYCEROL, MAGNESIUM ION, ... 著者 Nocek, B, Evdokimova, E, Kudritska, M, Savchenko, A, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2006-01-04 公開日 2006-02-21 最終更新日 2017-10-18 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of a putative enzyme (possible Nudix hydrolase) from Escherichia Coli K12 To be Published
3SHD	Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-1 分子名称: MANGANESE (II) ION, Phosphatase nudJ, SULFATE ION 著者 Hong, M.K, Kim, J.K, Kang, L.W. 登録日 2011-06-16 公開日 2012-06-27 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure and atypical hydrolysis mechanism of the Nudix hydrolase Orf153 (YmfB) from Escherichia coli To be Published
2G74	Y104F mutant of type 1 isopentenylpyrophosphate-dimethylallylpyrophosphate isomerase 分子名称: Isopentenyl-diphosphate delta-isomerase, MAGNESIUM ION, MANGANESE (II) ION 著者 de Ruyck, J, Wouters, J. 登録日 2006-02-27 公開日 2006-04-18 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 Structural role for Tyr-104 in Escherichia coli isopentenyl-diphosphate isomerase: site-directed mutagenesis, enzymology, and protein crystallography. J.Biol.Chem., 281, 2006
2FML	Crystal structure of MutT/nudix family protein from Enterococcus faecalis 分子名称: GLYCEROL, MutT/nudix family protein 著者 Chang, C, Quartey, P, Moy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2006-01-09 公開日 2006-02-21 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.26 Å) 主引用文献 Crystal structure of MutT/nudix family protein from Enterococcus faecalis To be Published
2FVV	Human Diphosphoinositol polyphosphate phosphohydrolase 1 分子名称: CHLORIDE ION, Diphosphoinositol polyphosphate phosphohydrolase 1, INOSITOL HEXAKISPHOSPHATE, ... 著者 Hallberg, B.M, Kursula, P, Ogg, D, Arrowsmith, C, Berglund, H, Edwards, A, Ehn, M, Flodin, S, Graslund, S, Hammarstrom, M, Hogbom, M, Holmberg-Schiavone, L, Kotenyova, T, Nilsson-Ehle, P, Nordlund, P, Nyman, T, Sagemark, J, Stenmark, P, Sundstrom, M, Thorsell, A.G, van den Berg, S, Weigelt, J, Persson, C, Structural Genomics Consortium (SGC) 登録日 2006-01-31 公開日 2006-03-11 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 Crystal structure of human diphosphoinositol phosphatase 1 Proteins, 77, 2009
3SMD	Crystal structure of a mut/nudix family protein from bacillus thuringiensis 分子名称: MutT/NUDIX family protein 著者 Palani, K, Kumaran, D, Burley, S.K, Swaminathan, S, New York SGX Research Center for Structural Genomics (NYSGXRC) 登録日 2011-06-27 公開日 2011-07-20 最終更新日 2021-02-10 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 Crystal structure of a mut/nudix family protein from bacillus thuringiensis To be Published
2G73	Y104F mutant type 1 IPP isomerase complex with EIPP 分子名称: 4-HYDROXY-3-METHYL BUTYL DIPHOSPHATE, Isopentenyl-diphosphate delta-isomerase, MAGNESIUM ION, ... 著者 de Ruyck, J, Wouters, J. 登録日 2006-02-27 公開日 2006-04-18 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.97 Å) 主引用文献 Structural role for Tyr-104 in Escherichia coli isopentenyl-diphosphate isomerase: site-directed mutagenesis, enzymology, and protein crystallography. J.Biol.Chem., 281, 2006
3BM4	Crystal Structure of Human ADP-ribose Pyrophosphatase NUDT5 In complex with magnesium and AMPcpr 分子名称: ADP-sugar pyrophosphatase, ALPHA-BETA METHYLENE ADP-RIBOSE, MAGNESIUM ION 著者 Zha, M, Guo, Q, Zhang, Y, Zhong, C, Ou, Y, Ding, J. 登録日 2007-12-12 公開日 2008-05-20 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Molecular Mechanism of ADP-Ribose Hydrolysis By Human NUDT5 From Structural and Kinetic Studies J.Mol.Biol., 379, 2008
2GT4	Crystal Structure of the Y103F mutant of the GDP-mannose mannosyl hydrolase in complex with GDP-mannose and MG+2 分子名称: GDP-mannose mannosyl hydrolase, GUANOSINE-5'-DIPHOSPHATE-ALPHA-D-MANNOSE, MAGNESIUM ION, ... 著者 Gabelli, S.B, Bianchet, M.A, Azurmendi, H.F, Mildvan, A.S, Amzel, L.A. 登録日 2006-04-27 公開日 2006-12-12 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 X-ray, NMR, and mutational studies of the catalytic cycle of the GDP-mannose mannosyl hydrolase reaction. Biochemistry, 45, 2006
2GT2	Structure of the E. coli GDP-mannose mannosyl hydrolase 分子名称: GDP-mannose mannosyl hydrolase 著者 Gabelli, S.B, Bianchet, M.A, Azurmendi, H.F, MIldvan, A.S, Amzel, L.M. 登録日 2006-04-27 公開日 2006-12-12 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 X-ray, NMR, and mutational studies of the catalytic cycle of the GDP-mannose mannosyl hydrolase reaction. Biochemistry, 45, 2006
3U53	Crystal structure of human Ap4A hydrolase 分子名称: Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical], GLYCEROL, SULFATE ION 著者 Ge, H.H, Teng, M.K. 登録日 2011-10-10 公開日 2012-10-10 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.705 Å) 主引用文献 Crystal structure of wild-type and mutant human Ap4A hydrolase Biochem.Biophys.Res.Commun., 432, 2013
3COU	Crystal structure of human Nudix motif 16 (NUDT16) 分子名称: Nucleoside diphosphate-linked moiety X motif 16 著者 Tresaugues, L, Moche, M, Arrowsmith, C.H, Berglund, H, Busam, R.D, Collins, R, Dahlgren, L.G, Edwards, A.M, Flodin, S, Flores, A, Graslund, S, Hammarstrom, M, Herman, M.D, Johansson, A, Johansson, I, Kallas, A, Karlberg, T, Kotenyova, T, Lehtio, L, Nilsson, M.E, Nyman, T, Persson, C, Sagemark, J, Schueler, H, Svensson, L, Thorsell, A.G, Van Den Berg, S, Welin, M, Weigelt, J, Wikstrom, M, Nordlund, P, Structural Genomics Consortium (SGC) 登録日 2008-03-29 公開日 2008-04-15 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal structure of human Nudix motif 16 (NUDT16). To be Published
2I6K	Crystal structure of human type I IPP isomerase complexed with a substrate analog 分子名称: ACETIC ACID, AMINOETHANOLPYROPHOSPHATE, Isopentenyl-diphosphate delta-isomerase 1, ... 著者 Zhang, C, Wei, Z, Gong, W. 登録日 2006-08-29 公開日 2007-06-05 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structures of human IPP isomerase: new insights into the catalytic mechanism J.Mol.Biol., 366, 2007
2I8U	GDP-mannose mannosyl hydrolase-calcium-GDP product complex 分子名称: CALCIUM ION, GDP-mannose mannosyl hydrolase, GUANOSINE-5'-DIPHOSPHATE 著者 Zou, Y, Li, C, Brunzelle, J.S, Nair, S.K. 登録日 2006-09-03 公開日 2007-06-19 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Molecular basis for substrate selectivity and specificity by an LPS biosynthetic enzyme Biochemistry, 46, 2007
2I8T	GDP-mannose mannosyl hydrolase-calcium-GDP-mannose complex 分子名称: CALCIUM ION, GDP-mannose mannosyl hydrolase, GLYCEROL, ... 著者 Zou, Y, Li, C, Brunzelle, J.S, Nair, S.K. 登録日 2006-09-03 公開日 2007-06-19 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Molecular basis for substrate selectivity and specificity by an LPS biosynthetic enzyme Biochemistry, 46, 2007
3DKU	Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-1 分子名称: Putative phosphohydrolase 著者 Hong, M.K, Kim, J.K, Jung, J.H, Jung, J.W, Choi, J.Y, Kang, L.W. 登録日 2008-06-26 公開日 2009-06-30 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.69 Å) 主引用文献 Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-1. To be Published
2ICJ	The crystal structure of human isopentenyl diphophate isomerase 分子名称: Isopentenyl-diphosphate delta isomerase, MAGNESIUM ION, SULFATE ION 著者 Zheng, W, Bartlam, M, Rao, Z. 登録日 2006-09-12 公開日 2007-03-20 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 The crystal structure of human isopentenyl diphosphate isomerase at 1.7 A resolution reveals its catalytic mechanism in isoprenoid biosynthesis J.Mol.Biol., 366, 2007
2ICK	Human isopentenyl diphophate isomerase complexed with substrate analog 分子名称: DIMETHYLALLYL DIPHOSPHATE, Isopentenyl-diphosphate delta isomerase, MANGANESE (II) ION 著者 Zheng, W, Bartlam, M, Rao, Z. 登録日 2006-09-12 公開日 2007-03-20 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 The crystal structure of human isopentenyl diphosphate isomerase at 1.7 A resolution reveals its catalytic mechanism in isoprenoid biosynthesis J.Mol.Biol., 366, 2007
3E57	Crystal structure of Tm1382, a putative Nudix hydrolase 分子名称: uncharacterized protein Tm1382 著者 Choi, W, Cooper, D.R, Derewenda, Z.S, Integrated Center for Structure and Function Innovation (ISFI) 登録日 2008-08-13 公開日 2008-09-30 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.89 Å) 主引用文献 Crystal structure of Tm1382, a putative Nudix hydrolase To be Published

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