PDB: 794 resultsInfo pagesStatus searchChemie searchBIRD

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3MGR	Binding of Rubidium ions to the Nucleosome Core Particle Descriptor: CHLORIDE ION, DNA (147-MER), Histone H2A, ... Authors: Mohideen, K, Muhammad, R, Davey, C.A. Deposit date: 2010-04-07 Release date: 2010-06-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Perturbations in nucleosome structure from heavy metal association. Nucleic Acids Res., 38, 2010
3MGP	Binding of Cobalt ions to the Nucleosome Core Particle Descriptor: CHLORIDE ION, COBALT (II) ION, DNA (147-MER), ... Authors: Mohideen, K, Muhammad, R, Davey, C.A. Deposit date: 2010-04-07 Release date: 2010-06-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.44 Å) Cite: Perturbations in nucleosome structure from heavy metal association. Nucleic Acids Res., 38, 2010
3MGS	Binding of Cesium ions to the Nucleosome Core particle Descriptor: CESIUM ION, CHLORIDE ION, DNA (147-MER), ... Authors: Mohideen, K, Muhammad, R, Davey, C.A. Deposit date: 2010-04-07 Release date: 2010-06-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.15 Å) Cite: Perturbations in nucleosome structure from heavy metal association. Nucleic Acids Res., 2010
3MGQ	Binding of Nickel ions to the Nucleosome Core Particle Descriptor: CHLORIDE ION, DNA (147-MER), Histone H2A, ... Authors: Mohideen, K, Muhammad, R, Davey, C.A. Deposit date: 2010-04-07 Release date: 2010-06-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Perturbations in nucleosome structure from heavy metal association. Nucleic Acids Res., 38, 2010
3MNN	A Ruthenium Antitumour Agent Forms Specific Histone Protein Adducts in the Nucleosome Core Descriptor: 1,3,5-triaza-7-phosphatricyclo[3.3.1.1~3,7~]decane, 1-methyl-4-(1-methylethyl)benzene, DNA (145-MER), ... Authors: Ong, M.S, Davey, C.A. Deposit date: 2010-04-22 Release date: 2011-04-06 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.5 Å) Cite: A ruthenium antimetastasis agent forms specific histone protein adducts in the nucleosome core Chemistry, 17, 2011
3MVD	Crystal structure of the chromatin factor RCC1 in complex with the nucleosome core particle Descriptor: DNA (146-MER), Histone H2A, Histone H2B 1.1, ... Authors: Makde, R.D, England, J.R, Yennawar, H.P, Tan, S. Deposit date: 2010-05-04 Release date: 2010-08-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structure of RCC1 chromatin factor bound to the nucleosome core particle. Nature, 467, 2010
3NQJ	Crystal structure of (CENP-A/H4)2 heterotetramer Descriptor: Histone H3-like centromeric protein A, Histone H4, PHOSPHATE ION Authors: Sekulic, N, Black, B.E. Deposit date: 2010-06-29 Release date: 2010-08-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.1 Å) Cite: The structure of (CENP-A-H4)(2) reveals physical features that mark centromeres. Nature, 467, 2010
3NQU	Crystal structure of partially trypsinized (CENP-A/H4)2 heterotetramer Descriptor: Histone H3-like centromeric protein A, Histone H4, SULFATE ION Authors: Sekulic, N, Black, B.E. Deposit date: 2010-06-29 Release date: 2010-08-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The structure of (CENP-A-H4)(2) reveals physical features that mark centromeres. Nature, 467, 2010
3O62	Nucleosome core particle modified with a cisplatin 1,3-cis-{Pt(NH3)2}2+-d(GpTpG) intrastrand cross-link Descriptor: Cisplatin, DNA (146-MER), Histone H2A type 1, ... Authors: Lippard, S.J, Todd, R.C. Deposit date: 2010-07-28 Release date: 2011-01-05 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.216 Å) Cite: Consequences of Cisplatin binding on nucleosome structure and dynamics. Chem.Biol., 17, 2010
3REK	2.6 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 146 bp Alpha-Satellite DNA (NCP146b) Derivatized with Oxaliplatin Descriptor: DNA (146-MER), Histone H2A type1, Histone H2B 1.1, ... Authors: Wu, B, Davey, C.A. Deposit date: 2011-04-04 Release date: 2012-03-14 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Specific DNA structural attributes modulate platinum anticancer drug site selection and cross-link generation. Nucleic Acids Res., 39, 2011
3REJ	2.55 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 146 bp Alpha-Satellite DNA (NCP146b) Descriptor: DNA (146-MER), Histone H2A type 1, Histone H2B 1.1, ... Authors: Wu, B, Davey, C.A. Deposit date: 2011-04-04 Release date: 2012-03-14 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Specific DNA structural attributes modulate platinum anticancer drug site selection and cross-link generation. Nucleic Acids Res., 39, 2011
3REL	2.7 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 146 bp Alpha-Satellite DNA (NCP146b) Derivatized with Triamminechloroplatinum(II) Chloride Descriptor: DNA (146-MER), Histone H2A, Histone H2B 1.1, ... Authors: Wu, B, Davey, C.A. Deposit date: 2011-04-04 Release date: 2012-03-14 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Specific DNA structural attributes modulate platinum anticancer drug site selection and cross-link generation. Nucleic Acids Res., 39, 2011
3R45	Structure of a CENP-A-Histone H4 Heterodimer in complex with chaperone HJURP Descriptor: GLYCEROL, Histone H3-like centromeric protein A, Histone H4, ... Authors: Hu, H, Liu, Y, Wang, M, Fang, J, Huang, H, Yang, N, Li, Y, Wang, J, Yao, X, Shi, Y, Li, G, Xu, R.M. Deposit date: 2011-03-17 Release date: 2011-04-06 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure of a CENP-A-histone H4 heterodimer in complex with chaperone HJURP Genes Dev., 25, 2011
6E0P	Cryo-EM structure of the centromeric nucleosome (Native alpha satellite DNA) in complex with a single chain antibody fragment Descriptor: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... Authors: Yadav, K.N.S, Zhou, B.-R. Deposit date: 2018-07-06 Release date: 2019-05-22 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (2.6 Å) Cite: Atomic resolution cryo-EM structure of a native-like CENP-A nucleosome aided by an antibody fragment. Nat Commun, 10, 2019
6DZT	Cryo-EM structure of nucleosome in complex with a single chain antibody fragment Descriptor: DNA (147-MER), Histone H2A, Histone H2B, ... Authors: Yadav, K.N.S, Zhou, B.-R. Deposit date: 2018-07-05 Release date: 2019-05-22 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (2.99 Å) Cite: Atomic resolution cryo-EM structure of a native-like CENP-A nucleosome aided by an antibody fragment. Nat Commun, 10, 2019
6E0C	Cryo-EM structure of the CENP-A nucleosome (W601) in complex with a single chain antibody fragment Descriptor: DNA (146-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... Authors: Yadav, K.N.S, Zhou, B.-R. Deposit date: 2018-07-06 Release date: 2019-05-22 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (2.63 Å) Cite: Atomic resolution cryo-EM structure of a native-like CENP-A nucleosome aided by an antibody fragment. Nat Commun, 10, 2019
6ESF	Nucleosome : Class 1 Descriptor: DNA (147-MER), Histone H2A, Histone H2B 1.1, ... Authors: Bilokapic, S, Halic, M. Deposit date: 2017-10-20 Release date: 2017-12-20 Last modified: 2019-10-23 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Histone octamer rearranges to adapt to DNA unwrapping. Nat. Struct. Mol. Biol., 25, 2018
6ESG	Nucleosome breathing : Class 2 Descriptor: DNA (141-MER), Histone H2A, Histone H2B 1.1, ... Authors: Bilokapic, S, Halic, M. Deposit date: 2017-10-20 Release date: 2017-12-20 Last modified: 2019-10-23 Method: ELECTRON MICROSCOPY (5.4 Å) Cite: Histone octamer rearranges to adapt to DNA unwrapping. Nat. Struct. Mol. Biol., 25, 2018
6ESH	Nucleosome breathing : Class 3 Descriptor: DNA (137-MER), Histone H2A, Histone H2B 1.1, ... Authors: Bilokapic, S, Halic, M. Deposit date: 2017-10-20 Release date: 2017-12-20 Last modified: 2019-10-23 Method: ELECTRON MICROSCOPY (5.1 Å) Cite: Histone octamer rearranges to adapt to DNA unwrapping. Nat. Struct. Mol. Biol., 25, 2018
6ESI	Nucleosome breathing : Class 4 Descriptor: DNA (133-MER), Histone H2A, Histone H2B 1.1, ... Authors: Bilokapic, S, Halic, M. Deposit date: 2017-10-20 Release date: 2017-12-20 Last modified: 2019-10-23 Method: ELECTRON MICROSCOPY (6.3 Å) Cite: Histone octamer rearranges to adapt to DNA unwrapping. Nat. Struct. Mol. Biol., 25, 2018
6FQ8	Class 3 : translocated nucleosome Descriptor: DNA (147-MER), Histone H2A, Histone H2B, ... Authors: Bilokapic, S, Halic, M. Deposit date: 2018-02-13 Release date: 2018-04-18 Last modified: 2019-12-11 Method: ELECTRON MICROSCOPY (4.8 Å) Cite: Structural rearrangements of the histone octamer translocate DNA. Nat Commun, 9, 2018
6FTX	Structure of the chromatin remodelling enzyme Chd1 bound to a ubiquitinylated nucleosome Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Chromatin-remodeling ATPase, ... Authors: Sundaramoorthy, R, Owen-hughes, T, Norman, D.G, Hughes, A. Deposit date: 2018-02-25 Release date: 2018-08-08 Last modified: 2018-10-17 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Structure of the chromatin remodelling enzyme Chd1 bound to a ubiquitinylated nucleosome. Elife, 7, 2018
6FQ6	Class 2 : distorted nucleosome Descriptor: DNA (147-MER), Histone H2A, Histone H2B, ... Authors: Bilokapic, S, Halic, M. Deposit date: 2018-02-13 Release date: 2018-04-18 Last modified: 2019-10-23 Method: ELECTRON MICROSCOPY (4 Å) Cite: Structural rearrangements of the histone octamer translocate DNA. Nat Commun, 9, 2018
6FQ5	Class 1 : canonical nucleosome Descriptor: DNA (147-MER), Histone H2A, Histone H2B, ... Authors: Bilokapic, S, Halic, M. Deposit date: 2018-02-13 Release date: 2018-04-18 Last modified: 2019-10-23 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Structural rearrangements of the histone octamer translocate DNA. Nat Commun, 9, 2018
6G0L	Structure of two molecules of the chromatin remodelling enzyme Chd1 bound to a nucleosome Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Chromo domain-containing protein 1, ... Authors: Sundaramoorthy, R, Owen-hughes, T, Norman, D.G, Hughes, A. Deposit date: 2018-03-19 Release date: 2018-08-22 Last modified: 2018-11-21 Method: ELECTRON MICROSCOPY (10 Å) Cite: Structure of the chromatin remodelling enzyme Chd1 bound to a ubiquitinylated nucleosome. Elife, 7, 2018

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