Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7SJC
DownloadVisualize
BU of 7sjc by Molmil
Crystal structure of dehaloperoxidase B in complex with gamma-terpinene
Descriptor: 1-methyl-4-(propan-2-yl)cyclohexa-1,4-diene, Dehaloperoxidase B, GLYCEROL, ...
Authors:Malewschik, T, Yun, D, de Serrano, V.S, Ghiladi, R.A.
Deposit date:2021-10-17
Release date:2022-11-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The Multifunctional Globin Dehaloperoxidase as a Biocatalyst in the Oxidation of Monoterpenes
To Be Published
7SJE
DownloadVisualize
BU of 7sje by Molmil
Crystal structure of dehaloperoxidase B in complex with p-cymene
Descriptor: 1-methyl-4-(1-methylethyl)benzene, Dehaloperoxidase B, OXYGEN MOLECULE, ...
Authors:Ghiladi, R.A, de Serrano, V.S, Malewschik, T, Yun, D.
Deposit date:2021-10-17
Release date:2022-11-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:The Multifunctional Globin Dehaloperoxidase as a Biocatalyst in the Oxidation of Monoterpenes
To Be Published
7SJB
DownloadVisualize
BU of 7sjb by Molmil
Crystal structure of dehaloperoxidase B in complex with alpha-terpinene
Descriptor: 1-methyl-4-(propan-2-yl)cyclohexa-1,3-diene, Dehaloperoxidase B, GLYCEROL, ...
Authors:Ghiladi, R.A, de Serrano, V.S, Malewschik, T, Yun, D.
Deposit date:2021-10-17
Release date:2022-11-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.718 Å)
Cite:The Multifunctional Globin Dehaloperoxidase as a Biocatalyst in the Oxidation of Monoterpenes
To Be Published
7SJF
DownloadVisualize
BU of 7sjf by Molmil
Structure of Dehaloperoxidase B in Complex with Thymol
Descriptor: 5-METHYL-2-(1-METHYLETHYL)PHENOL, Dehaloperoxidase B, GLYCEROL, ...
Authors:Ghiladi, R.A, de Serrano, V.S, Malewschik, T, Yun, D.
Deposit date:2021-10-17
Release date:2022-11-23
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:The Multifunctional Globin Dehaloperoxidase as a Biocatalyst in the Oxidation of Monoterpenes
To Be Published
7SJD
DownloadVisualize
BU of 7sjd by Molmil
Crystal structure of dehaloperoxidase B in complex with terpinolene
Descriptor: 1-methyl-4-(propan-2-ylidene)cyclohex-1-ene, Dehaloperoxidase B, GLYCEROL, ...
Authors:Ghiladi, R.A, de Serrano, V.S, Yun, D, Malewschik, T.
Deposit date:2021-10-17
Release date:2022-11-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.703 Å)
Cite:The Multifunctional Globin Dehaloperoxidase as a Biocatalyst in the Oxidation of Monoterpenes
To Be Published
7SJI
DownloadVisualize
BU of 7sji by Molmil
Crystal structure of dehaloperoxidase B in complex with R-(+)-limonene
Descriptor: (4R)-1-methyl-4-(prop-1-en-2-yl)cyclohex-1-ene, Dehaloperoxidase B, GLYCEROL, ...
Authors:Ghiladi, R.A, de Serrano, V.S, Malewschik, T, Yun, D.
Deposit date:2021-10-17
Release date:2022-11-23
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:The Multifunctional Globin Dehaloperoxidase as a Biocatalyst in the Oxidation of Monoterpenes
To Be Published
7VLE
DownloadVisualize
BU of 7vle by Molmil
Oxy-deoxy intermediate of V2 hemoglobin at 55% oxygen saturation
Descriptor: Extracellular A1 globin, Extracellular A2 globin, Extracellular B1 globin, ...
Authors:Numoto, N, Onoda, S, Kawano, Y, Okumura, H, Baba, S, Fukumori, Y, Miki, K, Ito, N.
Deposit date:2021-10-02
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of oxygen dissociation intermediates of 400 kDa V2 hemoglobin provide coarse snapshots of the protein allostery.
Biophys Physicobio., 19, 2022
7VLF
DownloadVisualize
BU of 7vlf by Molmil
Oxy-deoxy intermediate of V2 hemoglobin at 26% oxygen saturation
Descriptor: CALCIUM ION, Extracellular A1 globin, Extracellular A2 globin, ...
Authors:Numoto, N, Onoda, S, Kawano, Y, Okumura, H, Baba, S, Fukumori, Y, Miki, K, Ito, N.
Deposit date:2021-10-02
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of oxygen dissociation intermediates of 400 kDa V2 hemoglobin provide coarse snapshots of the protein allostery.
Biophys Physicobio., 19, 2022
7VLC
DownloadVisualize
BU of 7vlc by Molmil
Oxy-deoxy intermediate of V2 hemoglobin at 78% oxygen saturation
Descriptor: CALCIUM ION, Extracellular A1 globin, Extracellular A2 globin, ...
Authors:Numoto, N, Onoda, S, Kawano, Y, Okumura, H, Baba, S, Fukumori, Y, Miki, K, Ito, N.
Deposit date:2021-10-02
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures of oxygen dissociation intermediates of 400 kDa V2 hemoglobin provide coarse snapshots of the protein allostery.
Biophys Physicobio., 19, 2022
7VLD
DownloadVisualize
BU of 7vld by Molmil
Oxy-deoxy intermediate of V2 hemoglobin at 69% oxygen saturation
Descriptor: CALCIUM ION, Extracellular A1 globin, Extracellular A2 globin, ...
Authors:Numoto, N, Onoda, S, Kawano, Y, Okumura, H, Baba, S, Fukumori, Y, Miki, K, Ito, N.
Deposit date:2021-10-02
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of oxygen dissociation intermediates of 400 kDa V2 hemoglobin provide coarse snapshots of the protein allostery.
Biophys Physicobio., 19, 2022
7VDN
DownloadVisualize
BU of 7vdn by Molmil
High resolution crystal structure of Sperm Whale Myoglobin in the carbonmonoxy form
Descriptor: CARBON MONOXIDE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Shibayama, N, Sato-Tomita, A, Ishimoto, N, Park, S.Y.
Deposit date:2021-09-07
Release date:2022-09-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (0.93 Å)
Cite:X-ray fluorescence holography of biological metal sites: Application to myoglobin.
Biochem.Biophys.Res.Commun., 635, 2022
7VDE
DownloadVisualize
BU of 7vde by Molmil
3.6 A structure of the human hemoglobin
Descriptor: Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE
Authors:Fan, H.C, Zhang, Y, Sun, F.
Deposit date:2021-09-06
Release date:2021-12-29
Last modified:2022-01-19
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:A cryo-electron microscopy support film formed by 2D crystals of hydrophobin HFBI.
Nat Commun, 12, 2021
7V5Q
DownloadVisualize
BU of 7v5q by Molmil
The dimeric structure of G80A/H81A/L137E myoglobin
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Xie, C, Komori, H, Hirota, S.
Deposit date:2021-08-17
Release date:2022-06-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Experimental and theoretical study on converting myoglobin into a stable domain-swapped dimer by utilizing a tight hydrogen bond network at the hinge region.
Rsc Adv, 11, 2021
7V5R
DownloadVisualize
BU of 7v5r by Molmil
The dimeric structure of G80A/H81A/L137D myoglobin
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Xie, C, Komori, H, Hirota, S.
Deposit date:2021-08-17
Release date:2022-06-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Experimental and theoretical study on converting myoglobin into a stable domain-swapped dimer by utilizing a tight hydrogen bond network at the hinge region.
Rsc Adv, 11, 2021
7V5P
DownloadVisualize
BU of 7v5p by Molmil
The dimeric structure of G80A/H81A myoglobin
Descriptor: Myoglobin, OXYGEN ATOM, PROTOPORPHYRIN IX CONTAINING FE
Authors:Xie, C, Nagao, S, Shibata, N, Higuchi, Y, Hirota, S.
Deposit date:2021-08-17
Release date:2022-06-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Experimental and theoretical study on converting myoglobin into a stable domain-swapped dimer by utilizing a tight hydrogen bond network at the hinge region.
Rsc Adv, 11, 2021
7PCH
DownloadVisualize
BU of 7pch by Molmil
Human carboxyhemoglobin bound to Staphylococcus aureus hemophore IsdB - 1:2 complex
Descriptor: Hemoglobin subunit alpha, Hemoglobin subunit beta, Iron-regulated surface determinant protein B, ...
Authors:De Bei, O, Gianquinto, E, Chirgadze, D.Y, Hardwick, S.W, Spyrakis, F, Luisi, B.F, Campanini, B.
Deposit date:2021-08-03
Release date:2022-04-13
Method:ELECTRON MICROSCOPY (2.89 Å)
Cite:Cryo-EM structures of staphylococcal IsdB bound to human hemoglobin reveal the process of heme extraction.
Proc.Natl.Acad.Sci.USA, 119, 2022
7PCF
DownloadVisualize
BU of 7pcf by Molmil
Human methemoglobin bound to Staphylococcus aureus hemophore IsdB
Descriptor: Hemoglobin subunit alpha, Hemoglobin subunit beta, Iron-regulated surface determinant protein B, ...
Authors:De Bei, O, Gianquinto, E, Chirgadze, D.Y, Hardwick, S.W, Spyrakis, F, Luisi, B.F, Campanini, B.
Deposit date:2021-08-03
Release date:2022-04-13
Method:ELECTRON MICROSCOPY (5.82 Å)
Cite:Cryo-EM structures of staphylococcal IsdB bound to human hemoglobin reveal the process of heme extraction.
Proc.Natl.Acad.Sci.USA, 119, 2022
7PCQ
DownloadVisualize
BU of 7pcq by Molmil
Human carboxyhemoglobin bound to Staphylococcus aureus hemophore IsdB - 1:1 complex
Descriptor: Hemoglobin subunit alpha, Hemoglobin subunit beta, Iron-regulated surface determinant protein B, ...
Authors:De Bei, O, Gianquinto, E, Chirgadze, D.Y, Hardwick, S.W, Spyrakis, F, Luisi, B.F, Campanini, B.
Deposit date:2021-08-03
Release date:2022-04-13
Method:ELECTRON MICROSCOPY (3.62 Å)
Cite:Cryo-EM structures of staphylococcal IsdB bound to human hemoglobin reveal the process of heme extraction.
Proc.Natl.Acad.Sci.USA, 119, 2022
7OHD
DownloadVisualize
BU of 7ohd by Molmil
CRYSTAL STRUCTURE OF FERRIC MURINE NEUROGLOBIN CDLESS MUTANT
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, ISOPROPYL ALCOHOL, ...
Authors:Exertier, C, Freda, I, Montemiglio, L.C, Savino, C, Cerutti, G, Gugole, E, Vallone, B.
Deposit date:2021-05-10
Release date:2022-07-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Probing the Role of Murine Neuroglobin CDloop-D-Helix Unit in CO Ligand Binding and Structural Dynamics.
Acs Chem.Biol., 17, 2022
7MNH
DownloadVisualize
BU of 7mnh by Molmil
V59W mutant of Dehaloperoxidase A from Amphitrite ornata treated with Fluoride
Descriptor: Dehaloperoxidase A, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Shay, M.R, Thompson, M.K, Franzen, S.
Deposit date:2021-04-30
Release date:2021-11-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:A new inhibition mechanism in the multifunctional catalytic hemoglobin dehaloperoxidase as revealed by the DHP A(V59W) mutant: A spectroscopic and crystallographic study
J Porphyr Phthalocyanines, 25, 2021
7EHX
DownloadVisualize
BU of 7ehx by Molmil
X-ray crystal strcture of F46C/L49C sperm whale myoglobin with an intramolecular disulfide bond
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Lin, Y.W.
Deposit date:2021-03-30
Release date:2022-04-06
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray crystal strcture of F46C/L49C sperm whale myoglobin with an intramolecular disulfide bond
To Be Published
7M1I
DownloadVisualize
BU of 7m1i by Molmil
Crystal structure of dehaloperoxidase B in complex with 2,6-dichlorophenol
Descriptor: 2,6-dichlorophenol, Dehaloperoxidase B, GLYCEROL, ...
Authors:Ghiladi, R.A, de Serrano, V.S, Malewschik, T.
Deposit date:2021-03-13
Release date:2022-08-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Bridging the functional gap between reactivity and inhibition in dehaloperoxidase B from Amphitrite ornata: Mechanistic and structural studies with 2,4- and 2,6-dihalophenols.
J.Inorg.Biochem., 236, 2022
7M1J
DownloadVisualize
BU of 7m1j by Molmil
Crystal structure of dehaloperoxidase B in complex with 2,6-dibromophenol
Descriptor: 2,6-bis(bromanyl)phenol, Dehaloperoxidase B, GLYCEROL, ...
Authors:Ghiladi, R.A, de Serrano, V.S, Malewschik, T.
Deposit date:2021-03-13
Release date:2022-08-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.554 Å)
Cite:Bridging the functional gap between reactivity and inhibition in dehaloperoxidase B from Amphitrite ornata: Mechanistic and structural studies with 2,4- and 2,6-dihalophenols.
J.Inorg.Biochem., 236, 2022
7M1K
DownloadVisualize
BU of 7m1k by Molmil
Crystal structure of dehaloperoxidase B in complex with 2,6-difluorophenol
Descriptor: 2,6-DIFLUOROPHENOL, Dehaloperoxidase B, GLYCEROL, ...
Authors:Ghiladi, R.A, de Serrano, V.S, Malewschik, T.
Deposit date:2021-03-13
Release date:2022-08-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.795 Å)
Cite:Bridging the functional gap between reactivity and inhibition in dehaloperoxidase B from Amphitrite ornata: Mechanistic and structural studies with 2,4- and 2,6-dihalophenols.
J.Inorg.Biochem., 236, 2022
7LZO
DownloadVisualize
BU of 7lzo by Molmil
DHP B in complex with 2,4-Dibromophenol substrate
Descriptor: 2,4-bis(bromanyl)phenol, Dehaloperoxidase B, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Carey, L.M, Ghiladi, R.A.
Deposit date:2021-03-10
Release date:2022-03-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Mechanistic and Structural Studies of 2,4-dihalophenol: Bridging the Functional Gap between Reactivity and Inhibition in Dehaloperoxidase
To Be Published

220472

PDB entries from 2024-05-29

PDB statisticsPDBj update infoContact PDBjnumon