PDB: 5784 resultsInfo pagesStatus searchChemie searchBIRD

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5T8S	Crystal Structure of a S-adenosylmethionine Synthase from Neisseria gonorrhoeae with bound S-adenosylmethionine, AMP, Pyrophosphate, Phosphate, and Magnesium Descriptor: ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, PHOSPHATE ION, ... Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2016-09-08 Release date: 2016-09-28 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal Structure of a S-adenosylmethionine Synthase from Neisseria gonorrhoeae with bound S-adenosylmethionine, AMP, Pyrophosphate, Phosphate, and Magnesium to be published
5T8T	Crystal Structure of a S-adenosylmethionine Synthase from Neisseria gonorrhoeae with bound AMP and Magnesium Descriptor: ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, S-adenosylmethionine synthase Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2016-09-08 Release date: 2016-09-28 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal Structure of a S-adenosylmethionine Synthase from Neisseria gonorrhoeae with bound AMP and Magnesium to be published
7JIJ	ATP-bound AMP-activated protein kinase Descriptor: 5'-AMP-activated protein kinase catalytic subunit alpha-1, 5'-AMP-activated protein kinase subunit beta-2, 5'-AMP-activated protein kinase subunit gamma-1, ... Authors: Yan, Y, Zhou, X.E, Powell, K, Xu, T, Brunzelle, J.S, Xu, H.X, Melcher, K. Deposit date: 2020-07-23 Release date: 2021-07-28 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (5.5 Å) Cite: Structure of an AMPK complex in an inactive, ATP-bound state. Science, 373, 2021
5B6H	Crystal structure of an APRT from Yersinia pseudotuberculosis in complex with AMP. Descriptor: ADENOSINE MONOPHOSPHATE, Adenine phosphoribosyltransferase, CHLORIDE ION, ... Authors: Pavithra, G.C, Ramagopal, U.A. Deposit date: 2016-05-27 Release date: 2017-05-31 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of an APRT from Yersinia pseudotuberculosis in complex with AMP. To be published
8V4R	Crystal structure of Acetyl-CoA synthetase 2 in complex with AMP and CoA from Candida albicans Descriptor: ACETIC ACID, ADENOSINE MONOPHOSPHATE, Acetyl-coenzyme A synthetase 2, ... Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2023-11-29 Release date: 2023-12-06 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal structure of Acetyl-CoA synthetase 2 in complex with AMP and CoA from Candida albicans To be published
7D4U	ATP complex with double mutant cyclic trinucleotide synthase CdnD Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cyclic AMP-AMP-GMP synthase Authors: Yang, C.-S, Hou, M.-H, Tsai, C.-L, Wang, Y.-C, Ko, T.-P, Chen, Y. Deposit date: 2020-09-24 Release date: 2021-03-17 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal structure and functional implication of a bacterial cyclic AMP-AMP-GMP synthetase. Nucleic Acids Res., 49, 2021
7D4S	apo-form cyclic trinucleotide synthase CdnD Descriptor: Cyclic AMP-AMP-GMP synthase, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, MAGNESIUM ION Authors: Yang, C.-S, Hou, M.-H, Tsai, C.-L, Wang, Y.-C, Ko, T.-P, Chen, Y. Deposit date: 2020-09-24 Release date: 2021-03-17 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.93 Å) Cite: Crystal structure and functional implication of a bacterial cyclic AMP-AMP-GMP synthetase. Nucleic Acids Res., 49, 2021
7D4O	cyclic trinucleotide synthase CdnD in complex with ATP and ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cyclic AMP-AMP-GMP synthase, ... Authors: Yang, C.-S, Hou, M.-H, Tsai, C.-L, Wang, Y.-C, Ko, T.-P, Chen, Y. Deposit date: 2020-09-24 Release date: 2021-03-17 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.87 Å) Cite: Crystal structure and functional implication of a bacterial cyclic AMP-AMP-GMP synthetase. Nucleic Acids Res., 49, 2021
7D48	apo-form cyclic trinucleotide synthase CdnD Descriptor: Cyclic AMP-AMP-GMP synthase, SODIUM ION Authors: Yang, C.-S, Hou, M.-H, Tsai, C.-L, Wang, Y.-C, Ko, T.-P, Chen, Y. Deposit date: 2020-09-23 Release date: 2021-03-17 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Crystal structure and functional implication of a bacterial cyclic AMP-AMP-GMP synthetase. Nucleic Acids Res., 49, 2021
7D4J	ddATP complex of cyclic trinucleotide synthase CdnD Descriptor: 2',3'-dideoxyadenosine triphosphate, Cyclic AMP-AMP-GMP synthase, MAGNESIUM ION Authors: Yang, C.-S, Hou, M.-H, Tsai, C.-L, Wang, Y.-C, Ko, T.-P, Chen, Y. Deposit date: 2020-09-24 Release date: 2021-03-17 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.09 Å) Cite: Crystal structure and functional implication of a bacterial cyclic AMP-AMP-GMP synthetase. Nucleic Acids Res., 49, 2021
3DDJ	Crystal structure of a cbs domain-containing protein in complex with amp (sso3205) from sulfolobus solfataricus at 1.80 A resolution Descriptor: ADENOSINE MONOPHOSPHATE, CBS domain-containing protein, DI(HYDROXYETHYL)ETHER Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2008-06-05 Release date: 2008-06-24 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal structure of CBS domain-containing protein in complex with AMP (NP_344512.1) from SULFOLOBUS SOLFATARICUS at 1.80 A resolution To be published
5GYZ	luciferase AMP/7-cy-L complex Descriptor: (4S)-2-[6-(azepan-1-yl)-1,3-benzothiazol-2-yl]-4,5-dihydro-1,3-thiazole-4-carboxylic acid, ADENOSINE MONOPHOSPHATE, DI(HYDROXYETHYL)ETHER, ... Authors: Su, J, Wang, F. Deposit date: 2016-09-26 Release date: 2017-09-27 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structure of luciferase with AMP/7-cy-L at 2.4 Angstroms resolution To Be Published
1RO9	CRYSTAL STRUCTURES OF THE CATALYTIC DOMAIN OF PHOSPHODIESTERASE 4B2B COMPLEXED WITH 8-Br-AMP Descriptor: 8-BROMO-ADENOSINE-5'-MONOPHOSPHATE, ZINC ION, cAMP-specific 3',5'-cyclic phosphodiesterase 4B Authors: Xu, R.X, Rocque, W.J, Lambert, M.H, Vanderwall, D.E, Nolte, R.T. Deposit date: 2003-12-01 Release date: 2004-12-07 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.13 Å) Cite: Crystal structures of the catalytic domain of phosphodiesterase 4B complexed with AMP, 8-Br-AMP, and rolipram. J.Mol.Biol., 337, 2004
6NT7	Cryo-EM structure of full-length chicken STING in the cGAMP-bound dimeric state Descriptor: Stimulator of interferon genes protein, cGAMP Authors: Shang, G, Zhang, C, Chen, Z.J, Bai, X, Zhang, X. Deposit date: 2019-01-28 Release date: 2019-03-06 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (4 Å) Cite: Cryo-EM structures of STING reveal its mechanism of activation by cyclic GMP-AMP. Nature, 567, 2019
6NT8	Cryo-EM structure of full-length chicken STING in the cGAMP-bound tetrameric state Descriptor: Stimulator of interferon genes protein, cGAMP Authors: Shang, G, Zhang, C, Chen, Z.J, Bai, X, Zhang, X. Deposit date: 2019-01-28 Release date: 2019-03-06 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (6.5 Å) Cite: Cryo-EM structures of STING reveal its mechanism of activation by cyclic GMP-AMP. Nature, 567, 2019
5KS7	Crystal structure of Listeria monocytogenes OpuCA CBS domain dimer in complex with cyclic-di-AMP Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, Carnitine transport ATP-binding protein OpuCA Authors: Choi, P.H, Tong, L. Deposit date: 2016-07-07 Release date: 2016-07-20 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Cyclic di-AMP targets the cystathionine beta-synthase domain of the osmolyte transporter OpuC. Mol.Microbiol., 102, 2016
5LCD	Structure of Polyphosphate Kinase from Meiothermus ruber bound to AMP Descriptor: ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, PHOSPHATE ION, ... Authors: Gerhardt, S, Einsle, O, Kemper, F, Schwarzer, N. Deposit date: 2016-06-21 Release date: 2017-06-21 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.66 Å) Cite: Substrate recognition and mechanism revealed by ligand-bound polyphosphate kinase 2 structures. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7U56	Crystal Structure of D-alanine--D-alanine ligase from Klebsiella pneumoniae subsp. pneumoniae in complex with AMP Descriptor: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, CHLORIDE ION, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2022-03-01 Release date: 2022-03-09 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal Structure of D-alanine--D-alanine ligase from Klebsiella pneumoniae subsp. pneumoniae in complex with AMP to be published
4O81	SAICAR synthetase (Type-1) in complex with ADP AND AMP Descriptor: 1,4-BUTANEDIOL, ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ... Authors: Manjunath, K, Jeyakanthan, J, Sekar, K. Deposit date: 2013-12-26 Release date: 2014-12-31 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (2.1 Å) Cite: SAICAR synthetase (Type-1) in complex with ADP AND AMP To be Published
1FNC	REFINED CRYSTAL STRUCTURE OF SPINACH FERREDOXIN REDUCTASE AT 1.7 ANGSTROMS RESOLUTION: OXIDIZED, REDUCED, AND 2'-PHOSPHO-5'-AMP BOUND STATES Descriptor: ADENOSINE-2'-5'-DIPHOSPHATE, DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, FERREDOXIN-NADP+ REDUCTASE, ... Authors: Bruns, C.M, Karplus, P.A. Deposit date: 1995-01-05 Release date: 1995-04-20 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Refined crystal structure of spinach ferredoxin reductase at 1.7 A resolution: oxidized, reduced and 2'-phospho-5'-AMP bound states. J.Mol.Biol., 247, 1995
1FNB	REFINED CRYSTAL STRUCTURE OF SPINACH FERREDOXIN REDUCTASE AT 1.7 ANGSTROMS RESOLUTION: OXIDIZED, REDUCED, AND 2'-PHOSPHO-5'-AMP BOUND STATES Descriptor: FERREDOXIN-NADP+ REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION, ... Authors: Bruns, C.M, Karplus, P.A. Deposit date: 1995-01-05 Release date: 1995-04-20 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Refined crystal structure of spinach ferredoxin reductase at 1.7 A resolution: oxidized, reduced and 2'-phospho-5'-AMP bound states. J.Mol.Biol., 247, 1995
1FND	REFINED CRYSTAL STRUCTURE OF SPINACH FERREDOXIN REDUCTASE AT 1.7 ANGSTROMS RESOLUTION: OXIDIZED, REDUCED, AND 2'-PHOSPHO-5'-AMP BOUND STATES Descriptor: ADENOSINE-2'-5'-DIPHOSPHATE, FERREDOXIN-NADP+ REDUCTASE, FLAVIN-ADENINE DINUCLEOTIDE, ... Authors: Bruns, C.M, Karplus, P.A. Deposit date: 1995-01-05 Release date: 1995-04-20 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Refined crystal structure of spinach ferredoxin reductase at 1.7 A resolution: oxidized, reduced and 2'-phospho-5'-AMP bound states. J.Mol.Biol., 247, 1995
2LU4	Solution NMR structure of the beta2 carbohydrate module of AMP-activated protein kinase bound to glucosyl-cyclodextrin Descriptor: 5'-AMP-activated protein kinase subunit beta-2 Authors: Gooley, P, Koay, A, Stapleton, D. Deposit date: 2012-06-08 Release date: 2013-06-12 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structure and carbohydrate binding of the beta2-subunit of AMP-activated protein kinase To be Published
2LU3	Solution NMR structure of the apo-form of the beta2 carbohydrate module of AMP-activated protein kinase Descriptor: 5'-AMP-activated protein kinase subunit beta-2 Authors: Gooley, P, Koay, A, Stapleton, D. Deposit date: 2012-06-08 Release date: 2013-06-12 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structure and carbohydrate binding of the beta2-subunit of AMP-activated protein kinase To be Published
4GS5	The crystal structure of acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II-like protein from Dyadobacter fermentans DSM 18053 Descriptor: 1,2-ETHANEDIOL, Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II-like protein, IODIDE ION Authors: Tan, K, Holowicki, J, Clancy, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2012-08-27 Release date: 2012-09-12 Method: X-RAY DIFFRACTION (2.018 Å) Cite: The crystal structure of acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II-like protein from Dyadobacter fermentans DSM 18053 To be Published

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