PDB: 55698 resultsInfo pagesStatus searchChemie searchBIRD

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3ZCJ	Crystal structure of Helicobacter pylori T4SS protein CagL in a tetragonal crystal form with a helical RGD-motif (6 Mol per ASU) Descriptor: CAGL, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... Authors: Barden, S, Niemann, H.H. Deposit date: 2012-11-20 Release date: 2013-10-09 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.25 Å) Cite: A Helical Rgd Motif Promoting Cell Adhesion: Crystal Structures of the Helicobacter Pylori Type Iv Secretion System Pilus Protein Cagl Structure, 21, 2013
5T71	Human carboanhydrase F131C_C206S double mutant in complex with SA-2 Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-(HYDROXYMERCURY)BENZOIC ACID, 4-[(E)-diazenyl]benzene-1-sulfonamide, ... Authors: DuBay, K.H, Iwan, K, Osorio-Planes, L, Geissler, P, Groll, M, Trauner, D, Broichhagen, J. Deposit date: 2016-09-02 Release date: 2017-09-06 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.3 Å) Cite: A Predictive Approach for the Optical Control of Carbonic Anhydrase II Activity. ACS Chem. Biol., 13, 2018
4D8J	Structure of E. coli MatP-mats complex Descriptor: 5'-D(*TP*TP*CP*GP*TP*GP*AP*CP*AP*AP*TP*GP*TP*CP*AP*CP*GP*AP*A)-3', 5'-D(*TP*TP*CP*GP*TP*GP*AP*CP*AP*TP*TP*GP*TP*CP*AP*CP*GP*AP*A)-3', Macrodomain Ter protein Authors: Dupaigne, P, Tonthat, N.K, Espeli, O, Whitfill, T, Boccard, F, Schumacher, M.A. Deposit date: 2012-01-10 Release date: 2012-11-21 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.55 Å) Cite: Molecular basis for a protein-mediated DNA-bridging mechanism that functions in condensation of the E. coli chromosome. Mol.Cell, 48, 2012
4NGH	Crystal structure of the HIV-1 neutralizing antibody 4E10 Fab fragment in complex with a hydrocarbon-stapled peptide containing the 4e10 epitope on gp41 and a tethered phosphate moiety. Descriptor: FAB HEAVY CHAIN, FAB LIGHT CHAIN, MODIFIED FRAGMENT OF HIV GLYCOPROTEIN (GP41) Authors: Irimia, A, Wilson, I.A. Deposit date: 2013-11-01 Release date: 2014-12-03 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (2.68 Å) Cite: Stapled HIV-1 peptides recapitulate antigenic structures and engage broadly neutralizing antibodies. Nat.Struct.Mol.Biol., 21, 2014
5T74	Human carboanhydrase F131C_C206S double mutant in complex with 14 Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-[2,5-bis(oxidanylidene)pyrrol-1-yl]-~{N}-(4-sulfamoylphenyl)ethanamide, 4-(HYDROXYMERCURY)BENZOIC ACID, ... Authors: DuBay, K.H, Iwan, K, Osorio-Planes, L, Geissler, P, Groll, M, Trauner, D, Broichhagen, J. Deposit date: 2016-09-02 Release date: 2017-09-06 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.2 Å) Cite: A Predictive Approach for the Optical Control of Carbonic Anhydrase II Activity. ACS Chem. Biol., 13, 2018
4CPG	Solution structure of the SGTA N-terminal domain Descriptor: SMALL GLUTAMINE-RICH TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN ALPHA Authors: Darby, J.F, Krysztofinska, E.M, Simpson, P.J, Isaacson, R.L. Deposit date: 2014-02-06 Release date: 2014-12-03 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution Structure of the Sgta Dimerisation Domain and Investigation of its Interactions with the Ubiquitin-Like Domains of Bag6 and Ubl4A. Plos One, 9, 2014
3FWV	Crystal Structure of a Redesigned TPR Protein, T-MOD(VMY), in Complex with MEEVF Peptide Descriptor: Heat shock protein HSP 90-beta, Hsc70/Hsp90-organizing protein, NICKEL (II) ION Authors: Jackrel, M.E, Valverde, R, Regan, L. Deposit date: 2009-01-19 Release date: 2009-04-21 Last modified: 2021-10-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Redesign of a protein-peptide interaction: characterization and applications Protein Sci., 18, 2009
1O0M	Ribonuclease A in complex with uridine-2'-phosphate Descriptor: PHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER, Ribonuclease pancreatic Authors: Leonidas, D.D, Oikonomakos, N.G, Chrysina, E.D, Kosmopoulou, M.N, Vlassi, M. Deposit date: 2003-02-24 Release date: 2003-12-09 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.5 Å) Cite: High-resolution crystal structures of ribonuclease A complexed with adenylic and uridylic nucleotide inhibitors. Implications for structure-based design of ribonucleolytic inhibitors PROTEIN SCI., 12, 2003
1FU7	STRUCTURES OF GLYCOGEN PHOSPHORYLASE-INHIBITOR COMPLEXES AND THE IMPLICATIONS FOR STRUCTURE-BASED DRUG DESIGN Descriptor: GLYCOGEN PHOSPHORYLASE, N-(methoxycarbonyl)-beta-D-glucopyranosylamine, PYRIDOXAL-5'-PHOSPHATE Authors: Watson, K.A, Tsitsanou, K.E, Gregoriou, M, Zographos, S.E, Skamnaki, V.T, Oikonomakos, N.G, Fleet, G.W, Johnson, L.N. Deposit date: 2000-09-14 Release date: 2000-10-04 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2.36 Å) Cite: Kinetic and crystallographic studies of glucopyranose spirohydantoin and glucopyranosylamine analogs inhibitors of glycogen phosphorylase. Proteins, 61, 2005
4EEG	Crystal structure of human M340H-beta-1,4-galactosyltransferase-1 (M340H-B4GAL-T1) in complex with GLCNAC-BETA1,6-Gal-Beta Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)-beta-D-galactopyranose, Beta-1,4-galactosyltransferase 1, GLYCEROL, ... Authors: Ramakrishnan, B, Qasba, P.K. Deposit date: 2012-03-28 Release date: 2012-07-04 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Binding of N-acetylglucosamine (GlcNAc) beta 1-6-branched oligosaccharide acceptors to beta 4-galactosyltransferase I reveals a new ligand binding mode. J.Biol.Chem., 287, 2012
4AJB	3D structure of E. coli Isocitrate Dehydrogenase K100M mutant in complex with Isocitrate, magnesium(II) and thioNADP Descriptor: 7-THIONICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ISOCITRIC ACID, MAGNESIUM ION, ... Authors: Goncalves, S, Miller, S.P, Carrondo, M.A, Dean, A.M, Matias, P.M. Deposit date: 2012-02-16 Release date: 2012-10-31 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Induced Fit and the Catalytic Mechanism of Isocitrate Dehydrogenase. Biochemistry, 51, 2012
4EEA	Crystal structure of human M340H-beta-1,4-galactosyltransferase-1 (M340H-B4GAL-T1) in complex with GLCNAC-BETA1,6-Gal-Beta1,4-Glc-BETA Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose, Beta-1,4-galactosyltransferase 1, GLYCEROL, ... Authors: Ramakrishnan, B, Qasba, P.K. Deposit date: 2012-03-28 Release date: 2012-07-04 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Binding of N-acetylglucosamine (GlcNAc) beta 1-6-branched oligosaccharide acceptors to beta 4-galactosyltransferase I reveals a new ligand binding mode. J.Biol.Chem., 287, 2012
7VUD	Carotenoid Cleavage Dioxygenase 1 from Osmanthus fragrans Descriptor: Carotenoid cleavage dioxygenase 1, NICKEL (II) ION, OXTOXYNOL-10, ... Authors: Sharma, D, Xue, B. Deposit date: 2021-11-02 Release date: 2022-11-02 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Carotenoid Cleavage Dioxygenase 1 from Osmanthus fragrans To Be Published
4AJS	3D structure of E. coli Isocitrate Dehydrogenase K100M mutant in complex with isocitrate, magnesium(II), Adenosine 2',5'-biphosphate and ribosylnicotinamide-5'-phosphate Descriptor: ADENOSINE-2'-5'-DIPHOSPHATE, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, ISOCITRATE DEHYDROGENASE [NADP], ... Authors: Goncalves, S, Miller, S.P, Carrondo, M.A, Dean, A.M, Matias, P.M. Deposit date: 2012-02-17 Release date: 2012-10-31 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.802 Å) Cite: Induced Fit and the Catalytic Mechanism of Isocitrate Dehydrogenase. Biochemistry, 51, 2012
4AEY	Crystal structure of FolX from Pseudomonas aeruginosa Descriptor: D-ERYTHRO-7,8-DIHYDRONEOPTERIN TRIPHOSPHATE EPIMERASE Authors: Gabrielsen, M, Beckham, K.S.H, Roe, A.J. Deposit date: 2012-01-13 Release date: 2012-03-21 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3 Å) Cite: Folx from Pseudomonas Aeruginosa is Octameric in Both Crystal and Solution. FEBS Lett., 586, 2012
4JA7	Rat PP5 co-crystallized with P5SA-2 Descriptor: MAGNESIUM ION, Serine/threonine-protein phosphatase 5 Authors: Haslbeck, V, Helmuth, M, Alte, F, Popowicz, G, Schmidt, W, Weiwad, M, Fischer, G, Gemmecker, G, Sattler, M, Striggow, F, Groll, M, Richter, K. Deposit date: 2013-02-18 Release date: 2014-02-19 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2 Å) Cite: Selective activators of protein phosphatase 5 target the auto-inhibitory mechanism. Biosci.Rep., 35, 2015
2C8V	Insights into the role of nucleotide-dependent conformational change in nitrogenase catalysis: Structural characterization of the nitrogenase Fe protein Leu127 deletion variant with bound MgATP Descriptor: ADENOSINE-5'-TRIPHOSPHATE, FE2/S2 (INORGANIC) CLUSTER, MAGNESIUM ION, ... Authors: Sen, S, Krishnakumar, A, McClead, J, Johnson, M.K, Seefeldt, L.C, Szilagyi, R.K, Peters, J.W. Deposit date: 2005-12-08 Release date: 2006-06-01 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Insights Into the Role of Nucleotide-Dependent Conformational Change in Nitrogenase Catalysis: Structural Characterization of the Nitrogenase Fe Protein Leu127 Deletion Variant with Bound Mgatp. J.Inorg.Biochem., 100, 2006
4AJR	3D structure of E. coli Isocitrate Dehydrogenase K100M mutant in complex with alpha-ketoglutarate, magnesium(II) and NADPH - The product complex Descriptor: 2-OXOGLUTARIC ACID, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, ISOCITRATE DEHYDROGENASE [NADP], ... Authors: Goncalves, S, Miller, S.P, Carrondo, M.A, Dean, A.M, Matias, P.M. Deposit date: 2012-02-17 Release date: 2012-10-31 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.687 Å) Cite: Induced Fit and the Catalytic Mechanism of Isocitrate Dehydrogenase. Biochemistry, 51, 2012
1FU8	STRUCTURES OF GLYCOGEN PHOSPHORYLASE-INHIBITOR COMPLEXES AND THE IMPLICATIONS FOR STRUCTURE-BASED DRUG DESIGN Descriptor: 1-DEOXY-1-ACETYLAMINO-BETA-D-GLUCO-2-HEPTULOPYRANOSONAMIDE, GLYCOGEN PHOSPHORYLASE, PYRIDOXAL-5'-PHOSPHATE Authors: Watson, K.A, Tsitsanou, K.E, Gregoriou, M, Zographos, S.E, Skamnaki, V.T, Oikonomakos, N.G, Fleet, G.W, Johnson, L.N. Deposit date: 2000-09-14 Release date: 2000-10-04 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Kinetic and crystallographic studies of glucopyranose spirohydantoin and glucopyranosylamine analogs inhibitors of glycogen phosphorylase. Proteins, 61, 2005
4JJ7	Caspase-3 specific unnatural amino acid-based peptides Descriptor: Caspase inhibitor, Caspase-8, DITHIANE DIOL Authors: Vickers, C.J, Gonzalez-Paez, G.E, Wolan, D.W. Deposit date: 2013-03-07 Release date: 2013-06-12 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.178 Å) Cite: Selective Detection of Caspase-3 versus Caspase-7 Using Activity-Based Probes with Key Unnatural Amino Acids. Acs Chem.Biol., 8, 2013
4J8F	Crystal structure of a fusion protein containing the NBD of Hsp70 and the middle domain of Hip Descriptor: ADENOSINE-5'-DIPHOSPHATE, Heat shock 70 kDa protein 1A/1B, Hsc70-interacting protein, ... Authors: Li, Z, Bracher, A. Deposit date: 2013-02-14 Release date: 2013-07-03 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structure and function of Hip, an attenuator of the Hsp70 chaperone cycle. Nat.Struct.Mol.Biol., 20, 2013
1FTY	STRUCTURES OF GLYCOGEN PHOSPHORYLASE-INHIBITOR COMPLEXES AND THE IMPLICATIONS FOR STRUCTURE-BASED DRUG DESIGN Descriptor: 8,9,10-TRIHYDROXY-7-HYDROXYMETHYL-3-METHYL-6-OXA-1,3-DIAZA-SPIRO[4.5]DECANE-2,4-DIONE, GLYCOGEN PHOSPHORYLASE, PYRIDOXAL-5'-PHOSPHATE Authors: Watson, K.A, Tsitsanou, K.E, Gregoriou, M, Zographos, S.E, Skamnaki, V.T, Oikonomakos, N.G, Fleet, G.W, Johnson, L.N. Deposit date: 2000-09-13 Release date: 2000-10-04 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2.38 Å) Cite: Kinetic and crystallographic studies of glucopyranose spirohydantoin and glucopyranosylamine analogs inhibitors of glycogen phosphorylase. Proteins, 61, 2005
2J8G	Crystal structure of the modular Cpl-1 endolysin complexed with a peptidoglycan analogue (E94Q mutant in complex with a tetrasaccharide- pentapeptide) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ALANINE, D-GLUTAMIC ACID, ... Authors: Perez-Dorado, I, Hermoso, J.A. Deposit date: 2006-10-25 Release date: 2007-07-03 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.69 Å) Cite: Elucidation of the Molecular Recognition of Bacterial Cell Wall by Modular Pneumococcal Phage Endolysin Cpl-1. J.Biol.Chem., 282, 2007
4AE4	The UBAP1 subunit of ESCRT-I interacts with ubiquitin via a novel SOUBA domain Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, GLYCEROL, POTASSIUM ION, ... Authors: Agromayor, M, Soler, N, Caballe, A, Kueck, T, Freund, S.M, Allen, M.D, Bycroft, M, Perisic, O, Ye, Y, McDonald, B, Scheel, H, Hofmann, K, Neil, S.J.D, Martin-Serrano, J, Williams, R.L. Deposit date: 2012-01-06 Release date: 2012-03-21 Last modified: 2018-02-28 Method: X-RAY DIFFRACTION (1.65 Å) Cite: The UBAP1 subunit of ESCRT-I interacts with ubiquitin via a SOUBA domain. Structure, 20, 2012
4NJQ	Structural and kinetic bases for the metal preference of the M18 aminopeptidase from Pseudomonas aeruginosa Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, CARBONATE ION, COBALT (II) ION, ... Authors: Nguyen, D.D, Pandian, R, Kim, D.Y, Ha, S.C, Yun, K.H, Kim, K.S, Kim, J.H, Kim, K.K. Deposit date: 2013-11-11 Release date: 2014-04-02 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.702 Å) Cite: Structural and kinetic bases for the metal preference of the M18 aminopeptidase from Pseudomonas aeruginosa Biochem.Biophys.Res.Commun., 447, 2014

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