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8VAP
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BU of 8vap by Molmil
Structure of the E. coli clamp loader bound to the beta clamp in a Fully-Open conformation
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ...
Authors:Landeck, J.T, Kelch, B.A.
Deposit date:2023-12-11
Release date:2024-03-27
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication.
J.Biol.Chem., 300, 2024
8VAM
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BU of 8vam by Molmil
Structure of the E. coli clamp loader bound to the beta clamp in a Semi-Open conformation
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ...
Authors:Landeck, J.T, Kelch, B.A.
Deposit date:2023-12-11
Release date:2024-03-27
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication.
J.Biol.Chem., 300, 2024
8VAS
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BU of 8vas by Molmil
Structure of the E. coli clamp loader bound to the beta clamp in an Altered-Collar conformation
Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ...
Authors:Landeck, J.T, Kelch, B.A.
Deposit date:2023-12-11
Release date:2024-03-27
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication.
J.Biol.Chem., 300, 2024
5F15
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BU of 5f15 by Molmil
Crystal Structure of ArnT from Cupriavidus metallidurans bound to Undecaprenyl phosphate
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 4-amino-4-deoxy-L-arabinose (L-Ara4N) transferase, CHLORIDE ION, ...
Authors:Petrou, V.I, Clarke, O.B, Tomasek, D, Banerjee, S, Rajashankar, K.R, Mancia, F, New York Consortium on Membrane Protein Structure (NYCOMPS)
Deposit date:2015-11-30
Release date:2016-02-17
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structures of aminoarabinose transferase ArnT suggest a molecular basis for lipid A glycosylation.
Science, 351, 2016
6VU7
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BU of 6vu7 by Molmil
Crystal structure of YbjN, a putative transcription regulator from E. coli
Descriptor: CHLORIDE ION, YbjN protein
Authors:Stogios, P.J, Evdokimova, E, Di Leo, R, Savchenko, A, Joachimiak, A, Satchell, K.J.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-02-14
Release date:2020-03-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Crystal structure of YbjN, a putative transcription regulator from E. coli
To Be Published
7SQD
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BU of 7sqd by Molmil
Cryo-EM structure of the Achromobacter flagellar filament
Descriptor: Flagellin
Authors:Kreutzberger, M.A, Wang, F, Egelman, E.H.
Deposit date:2021-11-05
Release date:2022-03-16
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Flagellin outer domain dimerization modulates motility in pathogenic and soil bacteria from viscous environments.
Nat Commun, 13, 2022
6G2T
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BU of 6g2t by Molmil
human cardiac myosin binding protein C C1 Ig-domain bound to native cardiac thin filament
Descriptor: Actin, cytoplasmic 2, Myosin-binding protein C, ...
Authors:Risi, C, Belknap, B, Forgacs, E, Harris, S.P, Schroder, G.F, White, H.D, Galkin, V.E.
Deposit date:2018-03-23
Release date:2018-10-17
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (9 Å)
Cite:N-Terminal Domains of Cardiac Myosin Binding Protein C Cooperatively Activate the Thin Filament.
Structure, 26, 2018
6MRU
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BU of 6mru by Molmil
13-meric ClyA pore complex
Descriptor: Hemolysin E, chromosomal
Authors:Peng, W, de Souza Santos, M, Li, Y, Tomchick, D.R, Orth, K.
Deposit date:2018-10-15
Release date:2019-05-15
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:High-resolution cryo-EM structures of the E. coli hemolysin ClyA oligomers.
Plos One, 14, 2019
4QR8
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BU of 4qr8 by Molmil
Crystal Structure of E coli pepQ
Descriptor: MAGNESIUM ION, Xaa-Pro dipeptidase
Authors:Pingwei, L.
Deposit date:2014-06-30
Release date:2015-02-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.999 Å)
Cite:Structural basis of substrate selectivity of E. coli prolidase.
Plos One, 9, 2014
4RFO
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BU of 4rfo by Molmil
Crystal structure of the ADCC-Potent Antibody N60-I3 Fab in complex with HIV-1 Clade A/E gp120 and M48u1
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, HIV-1 clade A/E gp120, N60-i3 Fab heavy chain, ...
Authors:Tolbert, W.D, Gohain, N, Pazgier, M.
Deposit date:2014-09-26
Release date:2015-07-15
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Cocrystal Structures of Antibody N60-i3 and Antibody JR4 in Complex with gp120 Define More Cluster A Epitopes Involved in Effective Antibody-Dependent Effector Function against HIV-1.
J.Virol., 89, 2015
6MWR
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BU of 6mwr by Molmil
Recognition of MHC-like molecule
Descriptor: 1-deoxy-1-({2,6-dioxo-5-[(E)-propylideneamino]-1,2,3,6-tetrahydropyrimidin-4-yl}amino)-D-ribitol, 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-2-microglobulin, ...
Authors:Le Nours, J, Rossjohn, J.
Deposit date:2018-10-30
Release date:2019-12-18
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:A class of gamma delta T cell receptors recognize the underside of the antigen-presenting molecule MR1.
Science, 366, 2019
8A1V
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BU of 8a1v by Molmil
Sodium pumping NADH-quinone oxidoreductase with substrate Q2
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, DODECYL-BETA-D-MALTOSIDE, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Hau, J.-L, Kaltwasser, S, Vonck, J, Fritz, G, Steuber, J.
Deposit date:2022-06-02
Release date:2023-06-14
Last modified:2023-11-22
Method:ELECTRON MICROSCOPY (2.73 Å)
Cite:Conformational coupling of redox-driven Na + -translocation in Vibrio cholerae NADH:quinone oxidoreductase.
Nat.Struct.Mol.Biol., 30, 2023
8A1W
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BU of 8a1w by Molmil
Sodium pumping NADH-quinone oxidoreductase with substrate Q1
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, DODECYL-BETA-D-MALTOSIDE, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Hau, J.-L, Kaltwasser, S, Vonck, J, Fritz, G, Steuber, J.
Deposit date:2022-06-02
Release date:2023-06-14
Last modified:2023-11-22
Method:ELECTRON MICROSCOPY (2.56 Å)
Cite:Conformational coupling of redox-driven Na + -translocation in Vibrio cholerae NADH:quinone oxidoreductase.
Nat.Struct.Mol.Biol., 30, 2023
4R9M
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BU of 4r9m by Molmil
Crystal structure of spermidine N-acetyltransferase from Escherichia coli
Descriptor: MAGNESIUM ION, Spermidine N(1)-acetyltransferase
Authors:Filippova, E.V, Minasov, G, Kiryukhina, O, Shuvalova, L, Grimshaw, S, Wolfe, A.J, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2014-09-05
Release date:2014-11-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Analysis of crystalline and solution states of ligand-free spermidine N-acetyltransferase (SpeG) from Escherichia coli.
Acta Crystallogr D Struct Biol, 75, 2019
8A1T
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BU of 8a1t by Molmil
Sodium pumping NADH-quinone oxidoreductase
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, DODECYL-BETA-D-MALTOSIDE, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Hau, J.-L, Kaltwasser, S, Vonck, J, Fritz, G, Steuber, J.
Deposit date:2022-06-02
Release date:2023-06-14
Last modified:2023-11-22
Method:ELECTRON MICROSCOPY (3.37 Å)
Cite:Conformational coupling of redox-driven Na + -translocation in Vibrio cholerae NADH:quinone oxidoreductase.
Nat.Struct.Mol.Biol., 30, 2023
8A1X
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BU of 8a1x by Molmil
Sodium pumping NADH-quinone oxidoreductase with inhibitor DQA
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, DODECYL-BETA-D-MALTOSIDE, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Hau, J.-L, Kaltwasser, S, Vonck, J, Fritz, G, Steuber, J.
Deposit date:2022-06-02
Release date:2023-06-14
Last modified:2023-11-22
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Conformational coupling of redox-driven Na + -translocation in Vibrio cholerae NADH:quinone oxidoreductase.
Nat.Struct.Mol.Biol., 30, 2023
8A1Y
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BU of 8a1y by Molmil
Sodium pumping NADH-quinone oxidoreductase with inhibitor HQNO
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 2-HEPTYL-4-HYDROXY QUINOLINE N-OXIDE, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Hau, J.-L, Kaltwasser, S, Vonck, J, Fritz, G, Steuber, J.
Deposit date:2022-06-02
Release date:2023-06-14
Last modified:2023-11-22
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Conformational coupling of redox-driven Na + -translocation in Vibrio cholerae NADH:quinone oxidoreductase.
Nat.Struct.Mol.Biol., 30, 2023
8PMZ
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BU of 8pmz by Molmil
HEV gt3 P domain in complex with glycan-insensitive nAb p61.15
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Pro-secreted protein ORF2, scFv_p61.15
Authors:Ssebyatika, G, Krey, T.
Deposit date:2023-06-29
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.912 Å)
Cite:A novel class of broadly neutralizing hepatitis E virus-specific human antibodies
To Be Published
8PMY
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BU of 8pmy by Molmil
HEV gt3 P domain in complex with glycan-insensitive nAb p60.15
Descriptor: Capsid protein, ZINC ION, scFv_p60.15
Authors:Ssebyatika, G, Krey, T.
Deposit date:2023-06-29
Release date:2024-07-10
Method:X-RAY DIFFRACTION (2.406 Å)
Cite:A novel class of broadly neutralizing hepatitis E virus-specific human antibodies
To Be Published
4RFN
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BU of 4rfn by Molmil
Crystal structure of ADCC-potent Rhesus macaque ANTIBODY JR4 in complex with HIV-1 CLADE A/E GP120 and M48
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, FAB HEAVY CHAIN OF ADCC ANTI-HIV-1 ANTIBODY JR4, FAB LIGHT CHAIN OF ADCC ANTI-HIV-1 ANTIBODY JR4, ...
Authors:Gohain, N, Tolbert, W.D, Pazgier, M.
Deposit date:2014-09-26
Release date:2015-07-15
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.21 Å)
Cite:Cocrystal Structures of Antibody N60-i3 and Antibody JR4 in Complex with gp120 Define More Cluster A Epitopes Involved in Effective Antibody-Dependent Effector Function against HIV-1.
J.Virol., 89, 2015
3D74
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BU of 3d74 by Molmil
Crystal structure of a pheromone binding protein mutant D35A, from Apis mellifera, soaked at pH 5.5
Descriptor: N-BUTYL-BENZENESULFONAMIDE, Pheromone-binding protein ASP1
Authors:Pesenti, M.E, Spinelli, S, Bezirard, V, Briand, L, Pernollet, J.C, Tegoni, M, Cambillau, C.
Deposit date:2008-05-20
Release date:2009-05-26
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Queen bee pheromone binding protein pH-induced domain swapping favors pheromone release
J.Mol.Biol., 390, 2009
8A1U
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BU of 8a1u by Molmil
Sodium pumping NADH-quinone oxidoreductase with substrates NADH and Q2
Descriptor: 1,2-Distearoyl-sn-glycerophosphoethanolamine, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, DODECYL-BETA-D-MALTOSIDE, ...
Authors:Hau, J.-L, Kaltwasser, S, Vonck, J, Fritz, G, Steuber, J.
Deposit date:2022-06-02
Release date:2023-09-20
Last modified:2023-11-22
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Conformational coupling of redox-driven Na + -translocation in Vibrio cholerae NADH:quinone oxidoreductase.
Nat.Struct.Mol.Biol., 30, 2023
6NPS
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BU of 6nps by Molmil
Crystal structure of GH115 enzyme AxyAgu115A from Amphibacillus xylanus
Descriptor: AxyAgu115A, CHLORIDE ION, GLYCEROL
Authors:Stogios, P.J, Skarina, T, Di Leo, R, Yan, R, Master, E, Savchenko, A.
Deposit date:2019-01-18
Release date:2020-07-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Structural characterization of the family GH115 alpha-glucuronidase from Amphibacillus xylanus yields insight into its coordinated action with alpha-arabinofuranosidases.
N Biotechnol, 2021
3CT7
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BU of 3ct7 by Molmil
Crystal structure of D-allulose 6-phosphate 3-epimerase from Escherichia Coli K-12
Descriptor: D-allulose-6-phosphate 3-epimerase, MAGNESIUM ION, SULFATE ION
Authors:Fedorov, A.A, Fedorov, E.V, Chan, K.K, Gerlt, J.A, Almo, S.C.
Deposit date:2008-04-11
Release date:2008-08-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for substrate specificity in phosphate binding (beta/alpha)8-barrels: D-allulose 6-phosphate 3-epimerase from Escherichia coli K-12.
Biochemistry, 47, 2008
8B1V
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BU of 8b1v by Molmil
Dihydroprecondylocarpine acetate synthase 2 from Tabernanthe iboga
Descriptor: Dihydroprecondylocarpine acetate synthase 2, ZINC ION, precondylocarpine acetate
Authors:Langley, C, Basquin, J, Caputi, L, O'Connor, S.E.
Deposit date:2022-09-12
Release date:2022-10-19
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.882 Å)
Cite:Expansion of the Catalytic Repertoire of Alcohol Dehydrogenases in Plant Metabolism.
Angew.Chem.Int.Ed.Engl., 61, 2022

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PDB entries from 2024-08-07

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