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4A3D	RNA Polymerase II initial transcribing complex with a 6nt DNA-RNA hybrid Descriptor: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... Authors: Cheung, A.C.M, Sainsbury, S, Cramer, P. Deposit date: 2011-09-30 Release date: 2011-12-07 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Structural basis of initial RNA polymerase II transcription. EMBO J., 30, 2011
4A3K	RNA Polymerase II initial transcribing complex with a 7nt DNA-RNA hybrid Descriptor: 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DTP *TP*TP*CP*CP*BRU*GP*GP*TP*CP*AP*TP*T)-3', 5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP)-3', 5'-R(*AP*CP*CP*AP*GP*GP*AP)-3', ... Authors: Cheung, A.C.M, Sainsbury, S, Cramer, P. Deposit date: 2011-09-30 Release date: 2011-12-07 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Structural Basis of Initial RNA Polymerase II Transcription. Embo J., 30, 2011
4A3G	RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid Descriptor: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... Authors: Cheung, A.C.M, Sainsbury, S, Cramer, P. Deposit date: 2011-09-30 Release date: 2012-02-08 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Structural basis of initial RNA polymerase II transcription. EMBO J., 30, 2011
2R93	Elongation complex of RNA polymerase II with a hepatitis delta virus-derived RNA stem loop Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Lehmann, E, Brueckner, F, Cramer, P. Deposit date: 2007-09-12 Release date: 2007-11-27 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (4 Å) Cite: Molecular basis of RNA-dependent RNA polymerase II activity. Nature, 450, 2007
4C3H	Structure of 14-subunit RNA polymerase I at 3.27 A resolution, crystal form C2-93 Descriptor: DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12, DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA135, DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA14, ... Authors: Fernandez-Tornero, C, Moreno-Morcillo, M, Rashid, U.J, Taylor, N.M.I, Ruiz, F.M, Gruene, T, Legrand, P, Steuerwald, U, Muller, C.W. Deposit date: 2013-08-24 Release date: 2013-10-23 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.27 Å) Cite: Crystal Structure of the 14-Subunit RNA Polymerase I Nature, 502, 2013
4C3I	Structure of 14-subunit RNA polymerase I at 3.0 A resolution, crystal form C2-100 Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12, DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA135, ... Authors: Fernandez-Tornero, C, Moreno-Morcillo, M, Rashid, U.J, Taylor, N.M.I, Ruiz, F.M, Gruene, T, Legrand, P, Steuerwald, U, Muller, C.W. Deposit date: 2013-08-24 Release date: 2013-10-23 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystal Structure of the 14-Subunit RNA Polymerase I Nature, 502, 2013
4C3J	Structure of 14-subunit RNA polymerase I at 3.35 A resolution, crystal form C2-90 Descriptor: DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12, DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA135, DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA14, ... Authors: Fernandez-Tornero, C, Moreno-Morcillo, M, Rashid, U.J, Taylor, N.M.I, Ruiz, F.M, Gruene, T, Legrand, P, Steuerwald, U, Muller, C.W. Deposit date: 2013-08-24 Release date: 2013-10-23 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.35 Å) Cite: Crystal Structure of the 14-Subunit RNA Polymerase I Nature, 502, 2013
4V1O	Architecture of the RNA polymerase II-Mediator core transcription initiation complex Descriptor: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... Authors: Plaschka, C, Lariviere, L, Wenzeck, L, Hemann, M, Tegunov, D, Petrotchenko, E.V, Borchers, C.H, Baumeister, W, Herzog, F, Villa, E, Cramer, P. Deposit date: 2014-09-29 Release date: 2015-02-04 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (9.7 Å) Cite: Architecture of the RNA Polymerase II-Mediator Core Initiation Complex. Nature, 518, 2015
4V1N	Architecture of the RNA polymerase II-Mediator core transcription initiation complex Descriptor: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... Authors: Plaschka, C, Lariviere, L, Wenzeck, L, Hemann, M, Tegunov, D, Petrotchenko, E.V, Borchers, C.H, Baumeister, W, Herzog, F, Villa, E, Cramer, P. Deposit date: 2014-09-29 Release date: 2015-02-04 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (7.8 Å) Cite: Architecture of the RNA Polymerase II-Mediator Core Initiation Complex. Nature, 518, 2015
4V1M	Architecture of the RNA polymerase II-Mediator core transcription initiation complex Descriptor: 5'-D(*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP)-3', 5'-D(*CP*CP*AP*GP*GP*AP)-3', 5'-D(*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*TP*TP*TP*CP *CP*BRUP*GP*GP*TP*C)-3', ... Authors: Plaschka, C, Lariviere, L, Wenzeck, L, Hemann, M, Tegunov, D, Petrotchenko, E.V, Borchers, C.H, Baumeister, W, Herzog, F, Villa, E, Cramer, P. Deposit date: 2014-09-29 Release date: 2015-02-04 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (6.6 Å) Cite: Architecture of the RNA Polymerase II-Mediator Core Initiation Complex. Nature, 518, 2015
3PO3	Arrested RNA Polymerase II reactivation intermediate Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, DNA non-template strand, ... Authors: Cheung, A.C.M, Cramer, P. Deposit date: 2010-11-21 Release date: 2011-03-02 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Structural basis of RNA polymerase II backtracking, arrest and reactivation. Nature, 471, 2011
3PO2	Arrested RNA Polymerase II elongation complex Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, DI(HYDROXYETHYL)ETHER, ... Authors: Cheung, A.C.M, Cramer, P. Deposit date: 2010-11-21 Release date: 2011-03-02 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Structural basis of RNA polymerase II backtracking, arrest and reactivation. Nature, 471, 2011
1Y1W	Complete RNA Polymerase II elongation complex Descriptor: 5'-D(*AP*AP*GP*TP*AP*CP*T)-3', 5'-D(P*AP*GP*TP*AP*CP*TP*TP*AP*CP*GP*CP*CP*TP*GP*GP*TP*CP*AP*T)-3', 5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3', ... Authors: Cramer, P, Kettenberger, H, Armache, K.-J. Deposit date: 2004-11-19 Release date: 2005-01-04 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (4 Å) Cite: Complete RNA Polymerase II Elongation Complex Structure and Its Interactions with NTP and TFIIS Mol.Cell, 16, 2004
1Y1V	Refined RNA Polymerase II-TFIIS complex Descriptor: DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerase II 140 kDa polypeptide, DNA-directed RNA polymerase II 19 kDa polypeptide, ... Authors: Kettenberger, H, Armache, K.-J, Cramer, P. Deposit date: 2004-11-19 Release date: 2004-12-28 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (3.8 Å) Cite: Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS. Mol.Cell, 16, 2004
1Y77	Complete RNA Polymerase II elongation complex with substrate analogue GMPCPP Descriptor: 5'-D(*AP*AP*GP*TP*AP*CP*T)-3', 5'-D(P*AP*GP*TP*AP*CP*TP*TP*AP*CP*T*CP*GP*CP*CP*TP*GP*GP*TP*CP*TP*G)-3', 5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3', ... Authors: Kettenberger, H, Armache, K.-J, Cramer, P. Deposit date: 2004-12-08 Release date: 2005-01-04 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (4.5 Å) Cite: Complete RNA Polymerase II Elongation Complex Structure and Its Interactions with NTP and TFIIS Mol.Cell, 16, 2004
1WCM	Complete 12-Subunit RNA Polymerase II at 3.8 Angstrom Descriptor: DNA-DIRECTED RNA POLYMERASE II 13.6 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II 14.2 KDA POLYPEPTIDE, DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE, ... Authors: Armache, K.-J, Mitterweger, S, Meinhart, A, Cramer, P. Deposit date: 2004-11-17 Release date: 2004-12-14 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (3.8 Å) Cite: Structures of Complete RNA Polymerase II and its Subcomplex,Rpb4/7 J.Biol.Chem., 280, 2005
4BY7	elongating RNA Polymerase II-Bye1 TLD complex Descriptor: , 5'-D(*DAP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*DTP)-3', 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ... Authors: Kinkelin, K, Wozniak, G.G, Rothbart, S.B, Lidschreiber, M, Strahl, B.D, Cramer, P. Deposit date: 2013-07-18 Release date: 2013-09-11 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.15 Å) Cite: Structures of RNA polymerase II complexes with Bye1, a chromatin-binding PHF3/DIDO homologue. Proc. Natl. Acad. Sci. U.S.A., 110, 2013
4BY1	elongating RNA Polymerase II-Bye1 TLD complex soaked with AMPCPP Descriptor: 5'-D(*AP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*TP)-3', 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP *TP*TP*CP*CP*BRUP*GP*GP*TP*CP*AP*AP*T)-3', 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3', ... Authors: Kinkelin, K, Wozniak, G.G, Rothbart, S.B, Lidschreiber, M, Strahl, B.D, Cramer, P. Deposit date: 2013-07-17 Release date: 2013-09-11 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Structures of RNA Polymerase II Complexes with Bye1, a Chromatin-Binding Phf3/Dido1 Homologue Proc.Natl.Acad.Sci.USA, 110, 2013
4BXX	Arrested RNA polymerase II-Bye1 complex Descriptor: 5'-D(*AP*GP*CP*TP*AP*GP*CP*TP*TP*AP*CP*CP*TP*GP *GP*TP*GP* BRUP*TP*GP*CP*TP*CP*TP*AP*AP*DC)-3', 5'-D(*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP)-3', 5'-D(*GP*AP*GP*GP*TP*AP*AP*GP*CP*TP*AP*GP*CP*TP)-3', ... Authors: Kinkelin, K, Wozniak, G.G, Rothbart, S.B, Lidschreiber, M, Strahl, B.D, Cramer, P. Deposit date: 2013-07-16 Release date: 2013-09-11 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (3.28 Å) Cite: Structures of RNA Polymerase II Complexes with Bye1, a Chromatin-Binding Phf3/Dido1 Homologue Proc.Natl.Acad.Sci.USA, 110, 2013
7Z42	Influenza B polymerase with Pol II pSer5 CTD peptide mimic bound in site 2B Descriptor: DNA-directed RNA polymerase II subunit RPB1, Polymerase acidic protein, Polymerase basic protein 2, ... Authors: Cusack, S, Drncova, P. Deposit date: 2022-03-03 Release date: 2022-05-18 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.418 Å) Cite: Type B and type A influenza polymerases have evolved distinct binding interfaces to recruit the RNA polymerase II CTD. Plos Pathog., 18, 2022
4BBR	Structure of RNA polymerase II-TFIIB complex Descriptor: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... Authors: Sainsbury, S, Niesser, J, Cramer, P. Deposit date: 2012-09-27 Release date: 2012-11-14 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Structure and Function of the Initially Transcribing RNA Polymerase II-TFIIB Complex Nature, 493, 2013
4BBS	Structure of an initially transcribing RNA polymerase II-TFIIB complex Descriptor: 5'-D(*AP*GP*CP*GP*CP*AP*GP*TP*TP*GP*TP*GP*CP*TP *AP*TP*GP*AP*TP*AP*TP*TP*TP*TP*TP*AP*TP)-3', 5'-D(*GP*GP*CP*AP*CP*AP*AP*CP*TP*GP*CP*GP*CP*TP)-3', 5'-R(*AP*UP*AP*UP*CP*AP)-3', ... Authors: Sainsbury, S, Niesser, J, Cramer, P. Deposit date: 2012-09-27 Release date: 2012-11-14 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Structure and Function of the Initially Transcribing RNA Polymerase II-TFIIB Complex Nature, 493, 2013
3HOW	Complete RNA polymerase II elongation complex III with a T-U mismatch and a frayed RNA 3'-uridine Descriptor: 5'-D(*AP*CP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3', 5'-D(*AP*GP*CP*TP*C*AP*AP*GP*TP*AP*GP*TP*TP*AP*TP*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3', 5'-R(*UP*GP*CP*AP*UP*UP*U*CP*AP*AP*CP*CP*AP*GP*GP*CP*UP*U)-3', ... Authors: Sydow, J.F, Brueckner, F, Cheung, A.C.M, Damsma, G.E, Dengl, S, Lehmann, E, Vassylyev, D, Cramer, P. Deposit date: 2009-06-03 Release date: 2009-07-28 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA. Mol.Cell, 34, 2009
3HOY	Complete RNA polymerase II elongation complex VI Descriptor: 5'-D(*CP*CP*AP*AP*GP*CP*TP*CP*AP*AP*G*TP*AP*CP*TP*TP*AP*CP*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*TP*AP*CP*TP*AP*GP*TP*AP*CP*TP*GP*CP*C)-3', 5'-D(*CP*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*AP*GP*TP*AP*AP*AP*CP*TP*AP*GP*TP*AP*TP*T*GP*AP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*TP*T)-3', 5'-R(*UP*AP*UP*AP*UP*GP*CP*A*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*A)-3', ... Authors: Sydow, J.F, Brueckner, F, Cheung, A.C.M, Damsma, G.E, Dengl, S, Lehmann, E, Vassylyev, D, Cramer, P. Deposit date: 2009-06-03 Release date: 2009-07-28 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA. Mol.Cell, 34, 2009
3HOX	Complete RNA polymerase II elongation complex V Descriptor: 5'-D(*AP*CP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3', 5'-D(*AP*GP*CP*TP*C*AP*AP*GP*TP*AP*GP*TP*TP*AP*AP*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3', 5'-R(*UP*GP*CP*AP*UP*UP*U*CP*AP*AP*CP*CP*AP*GP*GP*CP*UP*U)-3', ... Authors: Sydow, J.F, Brueckner, F, Cheung, A.C.M, Damsma, G.E, Dengl, S, Lehmann, E, Vassylyev, D, Cramer, P. Deposit date: 2009-06-03 Release date: 2009-07-28 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.65 Å) Cite: Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA. Mol.Cell, 34, 2009

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