PDB: 45953 resultsInfo pagesStatus searchChemie searchBIRD

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2FKI	NMR Structure of Protein yjbR from Escherichia coli; Northeast Structural Genomics Consortium Target ER226 Descriptor: Protein yjbR Authors: Singarapu, K.K, Liu, G, Xiao, R, Shetty, K.G, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG) Deposit date: 2006-01-04 Release date: 2006-02-28 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: NMR structure of protein yjbR from Escherichia coli reveals 'double-wing' DNA binding motif. Proteins, 67, 2007
2CW7	Crystal structure of intein homing endonuclease II Descriptor: Endonuclease PI-PkoII, SULFATE ION Authors: Matsumura, H, Takahashi, H, Inoue, T, Hashimoto, H, Nishioka, M, Fujiwara, S, Takagi, M, Imanaka, T, Kai, Y. Deposit date: 2005-06-17 Release date: 2006-04-18 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1 Proteins, 63, 2006
3QXR	Crystal structure of the brominated CKIT-1 proto-oncogene promoter quadruplex DNA Descriptor: 5'-D(*AP*GP*GP*GP*AP*GP*GP*GP*CP*GP*CP*(BRU)P*GP*GP*GP*AP*GP*GP*AP*GP*GP*G)-3', MAGNESIUM ION, POTASSIUM ION Authors: Wei, D, Parkinson, G.N, Neidle, S. Deposit date: 2011-03-02 Release date: 2012-01-18 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.62 Å) Cite: Crystal structure of a c-kit promoter quadruplex reveals the structural role of metal ions and water molecules in maintaining loop conformation. Nucleic Acids Res., 40, 2012
1J8B	Structure of YbaB from Haemophilus influenzae (HI0442), a protein of unknown function Descriptor: YbaB Authors: Lim, K, Tempcyzk, A, Toedt, J, Parsons, J.F, Howard, A, Eisenstein, E, Herzberg, O, Structure 2 Function Project (S2F) Deposit date: 2001-05-21 Release date: 2003-01-14 Last modified: 2012-09-26 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Crystal structure of YbaB from Haemophilus influenzae (HI0442), a protein of unknown function coexpressed with the recombinational DNA repair protein RecR Proteins, 50, 2003
3IR2	Crystal structure of the APOBEC3G catalytic domain Descriptor: CHLORIDE ION, DNA dC->dU-editing enzyme APOBEC-3G, MAGNESIUM ION, ... Authors: Shandilya, S.M.D, Schiffer, C.A. Deposit date: 2009-08-21 Release date: 2010-01-12 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Crystal Structure of the APOBEC3G Catalytic Domain Reveals Potential Oligomerization Interfaces. Structure, 18, 2010
1XWY	Crystal structure of tatD deoxyribonuclease from Escherichia coli K12 at 2.0 A resolution Descriptor: Deoxyribonuclease tatD, ZINC ION Authors: Malashkevich, V.N, Xiang, D.F, Raushel, F.M, Almo, S.C, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC) Deposit date: 2004-11-02 Release date: 2005-01-25 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of tatD DNase from Escherichia coli at 2.0 A resolution To be Published
2A3Z	Ternary complex of the WH2 domain of WASP with Actin-DNAse I Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ADENOSINE-5'-TRIPHOSPHATE, Actin, ... Authors: Chereau, D, Kerff, F, Dominguez, R. Deposit date: 2005-06-27 Release date: 2005-11-01 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.078 Å) Cite: Actin-bound structures of Wiskott-Aldrich syndrome protein (WASP)-homology domain 2 and the implications for filament assembly Proc.Natl.Acad.Sci.Usa, 102, 2005
2A41	Ternary complex of the WH2 Domain of WIP with Actin-DNAse I Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Actin, alpha skeletal muscle, ... Authors: Chereau, D, Kerff, F, Dominguez, R. Deposit date: 2005-06-27 Release date: 2005-11-01 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Actin-bound structures of Wiskott-Aldrich syndrome protein (WASP)-homology domain 2 and the implications for filament assembly Proc.Natl.Acad.Sci.Usa, 102, 2005
1NVY	Strontium bound to the Holliday junction sequence d(TCGGTACCGA)4 Descriptor: STRONTIUM ION, d(TCGGTACCGA)4 Authors: Cardin, C.J, Thorpe, J.H, Gale, B.C, Teixeira, S.C.M. Deposit date: 2003-02-05 Release date: 2003-02-25 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Strontium, a MAD taerget for the DNA Holliday junction To be published
6JZB	Structural characterization of DnaJ from Streptococcus pneumonia presents a new tetramer of Hsp40 family Descriptor: Chaperone protein DnaJ, ZINC ION Authors: Zhu, M, Zhu, Z.L. Deposit date: 2019-04-30 Release date: 2020-11-04 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.754 Å) Cite: Structural insights into the formation of oligomeric state by a type I Hsp40 chaperone. Biochimie, 176, 2020
1IFY	Solution Structure of the Internal UBA Domain of HHR23A Descriptor: UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A Authors: Mueller, T.D, Feigon, J. Deposit date: 2001-04-13 Release date: 2002-07-03 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structures of UBA domains reveal a conserved hydrophobic surface for protein-protein interactions. J.Mol.Biol., 319, 2002
2AQY	(3+1) assembly of three human telomeric DNA repeats into an asymmetrical dimeric G-quadruplex Descriptor: 5'-D(*GP*(OIP)P*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*T)-3', 5'-D(*TP*AP*GP*GP*GP*(DU))-3' Authors: Zhang, N, Phan, A.T, Patel, D.J. Deposit date: 2005-08-18 Release date: 2006-03-07 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: (3 + 1) Assembly of three human telomeric repeats into an asymmetric dimeric G-quadruplex J.Am.Chem.Soc., 127, 2005
2IX0	RNase II Descriptor: CALCIUM ION, CYTIDINE-5'-MONOPHOSPHATE, EXORIBONUCLEASE 2, ... Authors: Frazao, C, Mcvey, C.E, Amblar, M, Barbas, A, Vonrhein, C, Arraiano, C.M, Carrondo, M.A. Deposit date: 2006-07-05 Release date: 2006-10-05 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.44 Å) Cite: Unravelling the Dynamics of RNA Degradation by Ribonuclease II and its RNA-Bound Complex Nature, 7, 2006
2IX1	RNase II D209N mutant Descriptor: 5'-D(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP *AP*AP*A)-3', EXORIBONUCLEASE 2, MAGNESIUM ION Authors: Frazao, C, McVey, C.E, Amblar, M, Barbas, A, Vonrhein, C, Arraiano, C.M, Carrondo, M.A. Deposit date: 2006-07-05 Release date: 2006-10-05 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.74 Å) Cite: Unravelling the Dynamics of RNA Degradation by Ribonuclease II and its RNA-Bound Complex Nature, 443, 2006
1R3G	1.16A X-ray structure of the synthetic DNA fragment with the incorporated 2'-O-[(2-Guanidinium)ethyl]-5-methyluridine residues Descriptor: 5'-D(*GP*CP*GP*TP*AP*(GMU)P*AP*CP*GP*C)-3'), MAGNESIUM ION Authors: Prakash, T.P, Puschl, A, Lesnik, E, Tereshko, V, Egli, M, Manoharan, M. Deposit date: 2003-10-01 Release date: 2003-10-21 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.16 Å) Cite: 2'-O-[2-(Guanidinium)ethyl]-Modified Oligonucleotides: Stabilizing Effect on Duplex and Triplex Structures. Org.Lett., 6, 2004
1ZZJ	Structure of the third KH domain of hnRNP K in complex with 15-mer ssDNA Descriptor: 5'-D(*TP*TP*CP*CP*CP*CP*TP*CP*CP*CP*CP*AP*TP*TP*T)-3', Heterogeneous nuclear ribonucleoprotein K Authors: Backe, P.H, Messias, A.C, Ravelli, R.B, Sattler, M, Cusack, S. Deposit date: 2005-06-14 Release date: 2005-08-09 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: X-Ray Crystallographic and NMR Studies of the Third KH Domain of hnRNP K in Complex with Single-Stranded Nucleic Acids STRUCTURE, 13, 2005
2HN7	HLA-A*1101 in complex with HBV peptide homologue Descriptor: Beta-2-microglobulin, DNA polymerase PEPTIDE HOMOLOGUE, HLA class I histocompatibility antigen, ... Authors: Blicher, T. Deposit date: 2006-07-12 Release date: 2006-11-28 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structure of HLA-A*1101 in complex with a hepatitis B peptide homologue. Acta Crystallogr.,Sect.F, 62, 2006
1IFI	MOLECULAR MODELS AND STRUCTURAL COMPARISONS OF NATIVE AND MUTANT CLASS I FILAMENTOUS BACTERIOPHAGES FF (FD, F1, M13), IF1 AND IKE Descriptor: INOVIRUS Authors: Marvin, D.A. Deposit date: 1994-01-31 Release date: 1994-07-31 Last modified: 2024-02-07 Method: FIBER DIFFRACTION (3.3 Å) Cite: Molecular models and structural comparisons of native and mutant class I filamentous bacteriophages Ff (fd, f1, M13), If1 and IKe. J.Mol.Biol., 235, 1994
1IFJ	MOLECULAR MODELS AND STRUCTURAL COMPARISONS OF NATIVE AND MUTANT CLASS I FILAMENTOUS BACTERIOPHAGES FF (FD, F1, M13), IF1 AND IKE Descriptor: INOVIRUS Authors: Marvin, D.A. Deposit date: 1994-01-31 Release date: 1994-07-31 Last modified: 2024-02-07 Method: FIBER DIFFRACTION (3.3 Å) Cite: Molecular models and structural comparisons of native and mutant class I filamentous bacteriophages Ff (fd, f1, M13), If1 and IKe. J.Mol.Biol., 235, 1994
3I64	Crystal structure of an O-methyltransferase (NcsB1) from neocarzinostatin biosynthesis in complex with S-adenosyl-L-homocysteine (SAH) and 1,4-dihydroxy-2-naphthoic acid (DHN) Descriptor: 1,4-dihydroxy-2-naphthoic acid, GLYCEROL, O-methyltransferase, ... Authors: Cooke, H.A, Bruner, S.D. Deposit date: 2009-07-06 Release date: 2009-09-01 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3 Å) Cite: Molecular basis of substrate promiscuity for the SAM-dependent O-methyltransferase NcsB1, involved in the biosynthesis of the enediyne antitumor antibiotic neocarzinostatin. Biochemistry, 48, 2009
3QKJ	The PWWP domain of human DNA (CYTOSINE-5-)-METHYLTRANSFERASE 3 BETA in complex with a bis-tris molecule Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA cytosine-5 methyltransferase 3 beta isoform 6 variant, SULFATE ION Authors: Zeng, H, Amaya, M.F, Mackenzie, F, Weigelt, J, Sundstrom, M, Arrowsmith, C.H, Edwards, A.M, Botchkarev, A, Min, J, Wu, H, Structural Genomics Consortium (SGC) Deposit date: 2011-02-01 Release date: 2011-03-09 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.04 Å) Cite: Structural and Histone Binding Ability Characterizations of Human PWWP Domains. Plos One, 6, 2011
3Q87	Structure of E. cuniculi Mtq2-Trm112 complex responible for the methylation of eRF1 translation termination factor Descriptor: N6 adenine specific DNA methylase, Putative uncharacterized protein ECU08_1170, S-ADENOSYLMETHIONINE, ... Authors: Liger, D, Mora, L, Lazar, N, Figaro, S, Henri, J, Scrima, N, Buckingham, R.H, van Tilbeurgh, H, Heurgue-Hamard, V, Graille, M. Deposit date: 2011-01-06 Release date: 2011-05-18 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.997 Å) Cite: Mechanism of activation of methyltransferases involved in translation by the Trm112 'hub' protein Nucleic Acids Res., 2011
7ZBS	Solution NMR structure of the HTH_8cm consensus miniprotein in 30% TFE at 278K Descriptor: HTH_8cm Authors: Socha, O, Jakubec, D. Deposit date: 2022-03-24 Release date: 2022-04-06 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: Consensus design of structured miniproteins using spectral analysis of domain residue interaction networks To Be Published
5BU5	HK620 Tail Needle crystallized at pH 9 (crystal form I) Descriptor: CALCIUM ION, CHLORIDE ION, DNA stabilization protein Authors: Bhardwaj, A, Cingolani, G. Deposit date: 2015-06-03 Release date: 2015-06-24 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.952 Å) Cite: Structural Plasticity of the Protein Plug That Traps Newly Packaged Genomes in Podoviridae Virions. J.Biol.Chem., 291, 2016
7YV4	Crystal structure of human UCHL3 in complex with Farrerol Descriptor: (2~{S})-2-(4-hydroxyphenyl)-6,8-dimethyl-5,7-bis(oxidanyl)-2,3-dihydrochromen-4-one, Ubiquitin carboxyl-terminal hydrolase isozyme L3 Authors: Mao, Z.Y, Xu, X.J, Zhang, W.T. Deposit date: 2022-08-18 Release date: 2023-04-19 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.58 Å) Cite: Farrerol directly activates the deubiqutinase UCHL3 to promote DNA repair and reprogramming when mediated by somatic cell nuclear transfer. Nat Commun, 14, 2023

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