PDB: 41646 resultsInfo pagesStatus searchChemie searchBIRD

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8ZQ3	Structure of ORP1L-RAB7A in the presence of GDP Descriptor: GUANOSINE-5'-DIPHOSPHATE, Oxysterol-binding protein-related protein 1, Ras-related protein Rab-7a Authors: Lu, Q, Zhang, J, Xu, C. Deposit date: 2024-05-31 Release date: 2024-06-26 Method: X-RAY DIFFRACTION (2.43 Å) Cite: Structure of GDP-bound Rab7 Q67L in complex with ORP1L. Biochem.Biophys.Res.Commun., 725, 2024
9BE2	Structure of the E. coli nucleic associated protein, YejK Descriptor: Nucleoid-associated protein YejK Authors: Schumacher, M.A. Deposit date: 2024-04-13 Release date: 2024-05-15 Last modified: 2024-07-24 Method: X-RAY DIFFRACTION (3.56 Å) Cite: Structure of the E. coli nucleoid-associated protein YejK reveals a novel DNA binding clamp. Nucleic Acids Res., 52, 2024
9B90	Cryo-EM structure of the human TRPM4 channel in complex with calcium and ATP at 37 degrees Celsius Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, Transient receptor potential cation channel subfamily M member 4 Authors: Hu, J, Lu, W, Du, J. Deposit date: 2024-04-01 Release date: 2024-05-15 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Physiological temperature drives TRPM4 ligand recognition and gating. Nature, 630, 2024
8Y94	Structure of Apo human norepinephrine transporter NET Descriptor: Sodium-dependent noradrenaline transporter Authors: Zhang, H, Xu, H.E, Jiang, Y. Deposit date: 2024-02-06 Release date: 2024-05-29 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.29 Å) Cite: Dimerization and antidepressant recognition at noradrenaline transporter. Nature, 630, 2024
9CK3	Cryo-EM structure of in-vitro alpha-synuclein fibril Descriptor: Alpha-synuclein Authors: Sanchez, J.C, Borcik, C.G, Tonelli, M, Sibert, B, Rienstra, C.M, Wright, E.R. Deposit date: 2024-07-08 Release date: 2024-07-24 Method: ELECTRON MICROSCOPY (2.04 Å) Cite: Multimodal High-Resolution Structure Determination Of Alpha-Synuclein Fibrils To Be Published
9ICC	DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX + 2'-DEOXYADENOSINE-5'-TRIPHOSPHATE, SOAKED IN THE PRESENCE OF DATP AND CRCL3 Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CHROMIUM ION, DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3'), ... Authors: Pelletier, H, Sawaya, M.R. Deposit date: 1995-12-15 Release date: 1995-12-15 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis. Biochemistry, 35, 1996
9ICG	DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DCTP (1 MILLIMOLAR) AND ZNCL2 (1 MILLIMOLAR) Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3'), DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3'), ... Authors: Pelletier, H, Sawaya, M.R. Deposit date: 1995-12-15 Release date: 1996-11-15 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (3 Å) Cite: Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis. Biochemistry, 35, 1996
9B8Z	Cryo-EM structure of the human TRPM4 channel subunit in complex with calcium and decavanadate at 37 degrees Celsius Descriptor: CALCIUM ION, DECAVANADATE, Transient receptor potential cation channel subfamily M member 4 Authors: Hu, J, Lu, W, Du, J. Deposit date: 2024-04-01 Release date: 2024-05-15 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Physiological temperature drives TRPM4 ligand recognition and gating. Nature, 630, 2024
6DI7	Vps1 GTPase-BSE fusion complexed with GDP Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Putative sorting protein Authors: Varlakhanova, N.V, Brady, T.M, Ford, M.G.J. Deposit date: 2018-05-22 Release date: 2018-08-22 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structures of the fungal dynamin-related protein Vps1 reveal a unique, open helical architecture. J. Cell Biol., 217, 2018
8XUO	Cryo-EM structure of tomato NRC2 dimer Descriptor: ADENOSINE-5'-DIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, NRC2 Authors: Sun, Y, Ma, S.C, Chai, J.J. Deposit date: 2024-01-13 Release date: 2024-05-22 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (2.84 Å) Cite: Oligomerization-mediated autoinhibition and cofactor binding of a plant NLR. Nature, 2024
9G48	Staphylococcus aureus MazF in complex with Nanobody 6 Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, CADMIUM ION, Endoribonuclease MazF, ... Authors: Zorzini, V, Haesaerts, S, Loris, R. Deposit date: 2024-07-15 Release date: 2024-07-24 Method: X-RAY DIFFRACTION (2.143536 Å) Cite: Nanobody-mediated activation and inhibition of Staphylococcus aureus MazF To Be Published
9EM1	Human pyridoxal phosphatase in complex with 7,8-dihydroxyflavone and phosphate Descriptor: 7,8-bis(oxidanyl)-2-phenyl-chromen-4-one, Chronophin, GLYCEROL, ... Authors: Brenner, M, Gohla, A, Schindelin, H. Deposit date: 2024-03-07 Release date: 2024-06-12 Last modified: 2024-06-26 Method: X-RAY DIFFRACTION (1.5 Å) Cite: 7,8-Dihydroxyflavone is a direct inhibitor of human and murine pyridoxal phosphatase. Elife, 13, 2024
9G5L	Stapylococcus aureus MazF in complex with nanobody 10 Descriptor: CHLORIDE ION, Endoribonuclease MazF, Nanobody 10 Authors: Prolic-Kalinsek, M, Haesaerts, S, Loris, R. Deposit date: 2024-07-17 Release date: 2024-07-24 Method: X-RAY DIFFRACTION (1.82220376 Å) Cite: Nanobody-mediated activation and inhibition of Staphylococcus aureus MazF To Be Published
9ILB	HUMAN INTERLEUKIN-1 BETA Descriptor: PROTEIN (HUMAN INTERLEUKIN-1 BETA) Authors: Yu, B, Blaber, M, Gronenborn, A.M, Clore, G.M, Caspar, D.L.D. Deposit date: 1998-10-22 Release date: 1999-01-06 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.28 Å) Cite: Disordered water within a hydrophobic protein cavity visualized by x-ray crystallography. Proc.Natl.Acad.Sci.USA, 96, 1999
9FOR	Structure of heteromeric amyloid filament of TDP-43 and AXNA11 from FTLD-TDP Type C (variant 1) Descriptor: Annexin A11, TAR DNA-binding protein 43 Authors: Arseni, D, Ryskeldi-Falcon, B. Deposit date: 2024-06-12 Release date: 2024-07-24 Method: ELECTRON MICROSCOPY (2.75 Å) Cite: Heteromeric amyloid filaments of ANXA11 and TDP-43 in FTLD-TDP Type C. Biorxiv, 2024
9B8X	Cryo-EM structure of the human TRPM4 channel subunit in complex with calcium 37 degrees Celsius Descriptor: CALCIUM ION, Transient receptor potential cation channel subfamily M member 4 Authors: Hu, J, Lu, W, Du, J. Deposit date: 2024-04-01 Release date: 2024-05-15 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (3 Å) Cite: Physiological temperature drives TRPM4 ligand recognition and gating. Nature, 630, 2024
9ICL	DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF PYROPHOSPHATE AND MNCL2 Descriptor: DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), MANGANESE (II) ION, ... Authors: Pelletier, H, Sawaya, M.R. Deposit date: 1996-01-04 Release date: 1996-11-15 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis Biochemistry, 35, 1996
9ICH	DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DGTP (1 MILLIMOLAR) AND ZNCL2 (1 MILLIMOLAR) Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*A)-3'), DNA (5'-D(*TP*CP*TP*AP*AP*TP*G)-3'), ... Authors: Pelletier, H, Sawaya, M.R. Deposit date: 1995-12-15 Release date: 1996-11-15 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis. Biochemistry, 35, 1996
9CL9	WT 12C IM fraction, B-b3 with RluB bound Descriptor: 23S rRNA, Large ribosomal subunit protein bL20, Large ribosomal subunit protein bL21, ... Authors: Lee, J, Sheng, K, Williamson, J.R. Deposit date: 2024-07-10 Release date: 2024-07-24 Method: ELECTRON MICROSCOPY (5.04 Å) Cite: 50S ribosome assembly intermediates at low temperature reveal bound RluB To Be Published
9WGA	2.2 ANGSTROMS RESOLUTION STRUCTURE ANALYSIS OF TWO REFINED N-ACETYLNEURAMINYLLACTOSE-WHEAT GERM AGGLUTININ ISOLECTIN COMPLEXES Descriptor: WHEAT GERM LECTIN Authors: Wright, C.S. Deposit date: 1990-04-20 Release date: 1990-10-15 Last modified: 2019-12-25 Method: X-RAY DIFFRACTION (1.8 Å) Cite: 2.2 A resolution structure analysis of two refined N-acetylneuraminyl-lactose--wheat germ agglutinin isolectin complexes. J.Mol.Biol., 215, 1990
9FE6	Short-chain dehydrogenase/reductase (SDR) from Thermus caliditerrae Descriptor: MAGNESIUM ION, SDR family oxidoreductase Authors: Kapur, B, Nar, H. Deposit date: 2024-05-17 Release date: 2024-06-26 Method: X-RAY DIFFRACTION (1.875 Å) Cite: In silico enzyme screening identifies an SDR ketoreductase from Thermus caliditerrae as an attractive biocatalyst and promising candidate for protein engineering Front Chem Biol, 2024
8Y0F	Solution NMR structure of the PTK7-binding DNA aptamer sgc8c Descriptor: DNA Authors: He, A, Wan, L, Guo, P, Han, D. Deposit date: 2024-01-22 Release date: 2024-06-26 Last modified: 2024-07-24 Method: SOLUTION NMR Cite: Structure-based investigation of a DNA aptamer targeting PTK7 reveals an intricate 3D fold guiding functional optimization. Proc.Natl.Acad.Sci.USA, 121, 2024
8XLN	Structure of the SARS-CoV-2 EG.5.1 spike RBD in complex with ACE2 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... Authors: Nomai, T, Anraku, Y, Kita, S, Hashiguchi, T, Maenaka, K. Deposit date: 2023-12-26 Release date: 2024-05-01 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3.78 Å) Cite: Virological characteristics of the SARS-CoV-2 Omicron EG.5.1 variant. Microbiol Immunol, 2024
9FBV	70S Escherichia coli ribosome with P-site initiatior tRNA. Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S16, ... Authors: Koller, T.O, Wilson, D.N. Deposit date: 2024-05-14 Release date: 2024-06-26 Method: ELECTRON MICROSCOPY (2.4 Å) Cite: Paenilamicins from the honey bee pathogen Paenibacillus larvae are context-specific translocation inhibitors of protein synthesis. Biorxiv, 2024
9G2A	Staphylococcus aureus MazF in complex with nanobody 4 Descriptor: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Endoribonuclease MazF, ... Authors: Prolic-Kalinsek, M, Zorzini, V, Haesaerts, S, Loris, R. Deposit date: 2024-07-10 Release date: 2024-07-17 Last modified: 2024-07-24 Method: X-RAY DIFFRACTION (2.046594 Å) Cite: Staphylococcus aureus MazF in complex with nanobody 4. To Be Published

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