Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3LP2
DownloadVisualize
BU of 3lp2 by Molmil
HIV-1 reverse transcriptase with inhibitor
Descriptor: 3-[4-(diethylamino)phenoxy]-6-(ethoxycarbonyl)-5,8-dihydroxy-7-oxo-7,8-dihydro-1,8-naphthyridin-1-ium, MANGANESE (II) ION, Reverse transcriptase/ribonuclease H, ...
Authors:Yan, Y, Munshi, S.K, Prasad, G.S, Su, H.P.
Deposit date:2010-02-04
Release date:2010-06-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural basis for the inhibition of RNase H activity of HIV-1 reverse transcriptase by RNase H active site-directed inhibitors.
J.Virol., 84, 2010
3LP1
DownloadVisualize
BU of 3lp1 by Molmil
HIV-1 reverse transcriptase with inhibitor
Descriptor: 11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE, 3-cyclopentyl-1,4-dihydroxy-1,8-naphthyridin-2(1H)-one, MANGANESE (II) ION, ...
Authors:Yan, Y, Munshi, S.K, Prasad, G.S, Su, H.P.
Deposit date:2010-02-04
Release date:2010-06-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Structural basis for the inhibition of RNase H activity of HIV-1 reverse transcriptase by RNase H active site-directed inhibitors.
J.Virol., 84, 2010
3LP0
DownloadVisualize
BU of 3lp0 by Molmil
HIV-1 reverse transcriptase with inhibitor
Descriptor: 11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE, MANGANESE (II) ION, Reverse transcriptase/ribonuclease H, ...
Authors:Yan, Y, Munshi, S.K, Prasad, G.S, Su, H.P.
Deposit date:2010-02-04
Release date:2010-06-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Structural basis for the inhibition of RNase H activity of HIV-1 reverse transcriptase by RNase H active site-directed inhibitors.
J.Virol., 84, 2010
3GLL
DownloadVisualize
BU of 3gll by Molmil
Crystal structure of Polynucleotide Phosphorylase (PNPase) core
Descriptor: Polyribonucleotide nucleotidyltransferase
Authors:Nurmohamed, S, Luisi, B.L.
Deposit date:2009-03-12
Release date:2009-06-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of Escherichia coli polynucleotide phosphorylase core bound to RNase E, RNA and manganese: implications for catalytic mechanism and RNA degradosome assembly.
J.Mol.Biol., 389, 2009
4K1C
DownloadVisualize
BU of 4k1c by Molmil
VCX1 Calcium/Proton Exchanger
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CALCIUM ION, IODIDE ION, ...
Authors:Waight, A.B, Pedersen, B.P, Stroud, R.M, Center for Structures of Membrane Proteins (CSMP)
Deposit date:2013-04-04
Release date:2013-05-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural basis for alternating access of a eukaryotic calcium/proton exchanger.
Nature, 499, 2013
4K1S
DownloadVisualize
BU of 4k1s by Molmil
Gly-Ser-SplB protease from Staphylococcus aureus at 1.96 A resolution
Descriptor: Serine protease SplB
Authors:Zdzalik, M, Pustelny, K, Stec-Niemczyk, J, Cichon, P, Czarna, A, Popowicz, G, Drag, M, Wladyka, B, Potempa, J, Dubin, A, Dubin, G.
Deposit date:2013-04-05
Release date:2014-04-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Staphylococcal SplB Serine Protease Utilizes a Novel Molecular Mechanism of Activation.
J.Biol.Chem., 289, 2014
4K7U
DownloadVisualize
BU of 4k7u by Molmil
Crystal structure of Zn2.3-hUb (human ubiquitin) adduct from a solution 70 mM zinc acetate/1.3 mM hUb
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Fermani, S, Falini, G, Calvaresi, M, Bottoni, A, Arnesano, F, Natile, G.
Deposit date:2013-04-17
Release date:2013-05-08
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Conformational selection of ubiquitin quaternary structures driven by zinc ions.
Chemistry, 19, 2013
5LQP
DownloadVisualize
BU of 5lqp by Molmil
Cryo-EM reconstruction of bacteriophage AP205 virus-like particles.
Descriptor: Coat protein
Authors:Diebolder, C.A, Rumnieks, J, Tars, K, Koning, R.I.
Deposit date:2016-08-17
Release date:2016-12-14
Last modified:2019-10-23
Method:ELECTRON MICROSCOPY (6 Å)
Cite:Structure of AP205 Coat Protein Reveals Circular Permutation in ssRNA Bacteriophages.
J. Mol. Biol., 428, 2016
8G2Q
DownloadVisualize
BU of 8g2q by Molmil
Structure of Ternary Complex of mouse cGAS with dsDNA and Bound GTP
Descriptor: Cyclic GMP-AMP synthase, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Wu, S, Sohn, J.
Deposit date:2023-02-06
Release date:2024-06-19
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Structure of Ternary Complex of mouse cGAS with dsDNA and Bound GTP
To Be Published
8G2P
DownloadVisualize
BU of 8g2p by Molmil
Structure of Ternary Complex of cGAS with dsDNA and Bound ATP and GTP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Cyclic GMP-AMP synthase, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Wu, S, Sohn, J.
Deposit date:2023-02-06
Release date:2024-06-19
Method:X-RAY DIFFRACTION (2.521 Å)
Cite:Structure of Ternary Complex of cGAS with dsDNA and Bound ATP and GTP
To Be Published
5WUQ
DownloadVisualize
BU of 5wuq by Molmil
Crystal structure of SigW in complex with its anti-sigma RsiW, a zinc binding form
Descriptor: Anti-sigma-W factor RsiW, ECF RNA polymerase sigma factor SigW, ZINC ION
Authors:Devkota, S.R, Kwon, E, Ha, S.C, Kim, D.Y.
Deposit date:2016-12-20
Release date:2017-03-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural insights into the regulation of Bacillus subtilis SigW activity by anti-sigma RsiW
PLoS ONE, 12, 2017
6DZ9
DownloadVisualize
BU of 6dz9 by Molmil
Solution structure of Rbfox2 RRM mimetic peptide CPfox2
Descriptor: CPfox2
Authors:Sun, Y.-T, Shortridge, M.D, Varani, G.
Deposit date:2018-07-03
Release date:2019-05-15
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:A Small Cyclic beta-Hairpin Peptide Mimics the Rbfox2 RNA Recognition Motif and Binds to the Precursor miRNA 20b.
Chembiochem, 20, 2019
6DZB
DownloadVisualize
BU of 6dzb by Molmil
Solution structure of Rbfox2 RRM mimetic peptide CPfox5
Descriptor: CPfox5
Authors:Sun, Y.-T, Varani, G.
Deposit date:2018-07-03
Release date:2019-05-15
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:A Small Cyclic beta-Hairpin Peptide Mimics the Rbfox2 RNA Recognition Motif and Binds to the Precursor miRNA 20b.
Chembiochem, 20, 2019
3MDB
DownloadVisualize
BU of 3mdb by Molmil
Crystal structure of the ternary complex of full length centaurin alpha-1, KIF13B FHA domain, and IP4
Descriptor: (2R)-3-{[(R)-{[(1S,2S,3R,4S,5S,6S)-2,6-dihydroxy-3,4,5-tris(phosphonooxy)cyclohexyl]oxy}(hydroxy)phosphoryl]oxy}propane -1,2-diyl dioctanoate, Arf-GAP with dual PH domain-containing protein 1, Kinesin-like protein KIF13B, ...
Authors:Shen, L, Tong, Y, Tempel, W, MacKenzie, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
Deposit date:2010-03-30
Release date:2010-08-04
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.952 Å)
Cite:Crystal structure of the ternary complex of full length centaurin alpha-1, KIF13B FHA domain, and IP4
to be published
4K7W
DownloadVisualize
BU of 4k7w by Molmil
Crystal structure of Zn3-hUb(human ubiquitin) adduct from a solution 100 mM zinc acetate/1.3 mM hUb
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, ZINC ION, ...
Authors:Fermani, S, Falini, G, Calvaresi, M, Bottoni, A, Arnesano, F, Natile, G.
Deposit date:2013-04-17
Release date:2013-05-08
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Conformational selection of ubiquitin quaternary structures driven by zinc ions.
Chemistry, 19, 2013
2MTF
DownloadVisualize
BU of 2mtf by Molmil
Solution structure of the La motif of human LARP6
Descriptor: La-related protein 6
Authors:Martino, L, Salisbury, N.JH, Atkinson, A.R, Kelly, G, Conte, M.R.
Deposit date:2014-08-18
Release date:2014-12-24
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Synergic interplay of the La motif, RRM1 and the interdomain linker of LARP6 in the recognition of collagen mRNA expands the RNA binding repertoire of the La module.
Nucleic Acids Res., 43, 2015
5LH9
DownloadVisualize
BU of 5lh9 by Molmil
Amine transaminase crystal structure from an uncultivated Pseudomonas species in the PLP-bound (internal aldimine) form
Descriptor: OMEGA TRANSAMINASE, PYRIDOXAL-5'-PHOSPHATE
Authors:Reddem, E, Thunnissen, A.M.W.H.
Deposit date:2016-07-10
Release date:2017-03-22
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Explaining Operational Instability of Amine Transaminases: Substrate-Induced Inactivation Mechanism and Influence of Quaternary Structure on Enzyme-Cofactor Intermediate Stability.
Acs Catalysis, 7, 2017
6DZC
DownloadVisualize
BU of 6dzc by Molmil
Solution structure of Rbfox2 RRM mimetic peptide CPfox6
Descriptor: CPfox6
Authors:Sun, Y.-T, Varani, G.
Deposit date:2018-07-03
Release date:2019-05-15
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:A Small Cyclic beta-Hairpin Peptide Mimics the Rbfox2 RNA Recognition Motif and Binds to the Precursor miRNA 20b.
Chembiochem, 20, 2019
6DZA
DownloadVisualize
BU of 6dza by Molmil
Solution structure of Rbfox2 RRM mimetic peptide CPfox4
Descriptor: CPfox4
Authors:Sun, Y.-T, Shortridge, M.D, Varani, G.
Deposit date:2018-07-03
Release date:2019-05-15
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:A Small Cyclic beta-Hairpin Peptide Mimics the Rbfox2 RNA Recognition Motif and Binds to the Precursor miRNA 20b.
Chembiochem, 20, 2019
6DZE
DownloadVisualize
BU of 6dze by Molmil
Solution structure of Rbfox2 RRM mimetic peptide CPfox7
Descriptor: CPfox7
Authors:Sun, Y.-T, Varani, G.
Deposit date:2018-07-03
Release date:2019-05-15
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:A Small Cyclic beta-Hairpin Peptide Mimics the Rbfox2 RNA Recognition Motif and Binds to the Precursor miRNA 20b.
Chembiochem, 20, 2019
5CFF
DownloadVisualize
BU of 5cff by Molmil
Crystal structure of Miranda/Staufen dsRBD5 complex
Descriptor: Miranda, Staufen
Authors:Shan, Z, Wen, W.
Deposit date:2015-07-08
Release date:2015-10-21
Last modified:2015-10-28
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The structural basis of Miranda-mediated Staufen localization during Drosophila neuroblast asymmetric division
Nat Commun, 6, 2015
7QGI
DownloadVisualize
BU of 7qgi by Molmil
Crystal structure of SARS-CoV-2 NSP14 in the absence of NSP10
Descriptor: PHOSPHATE ION, Proofreading exoribonuclease nsp14, ZINC ION
Authors:Newman, J.A, Imprachim, N, Yosaatmadja, Y, Gileadi, O.
Deposit date:2021-12-08
Release date:2022-01-26
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structures and fragment screening of SARS-CoV-2 NSP14 reveal details of exoribonuclease activation and mRNA capping and provide starting points for antiviral drug development.
Nucleic Acids Res., 51, 2023
2MQH
DownloadVisualize
BU of 2mqh by Molmil
Solution structure of the Chlamydomonas reinhardtii NAB1 cold shock domain, CSD1
Descriptor: Nucleic acid binding protein
Authors:Sawyer, A, Mobli, M.
Deposit date:2014-06-20
Release date:2015-05-06
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of the RNA-binding cold-shock domain of the Chlamydomonas reinhardtii NAB1 protein and insights into RNA recognition.
Biochem.J., 469, 2015
5OR5
DownloadVisualize
BU of 5or5 by Molmil
NMR structure of the complex formed by an engineered region 2 of sigmaE in complex with GTAAAA
Descriptor: DNA (5'-D(*GP*TP*AP*AP*AP*A)-3'), ECF RNA polymerase sigma-E factor,ECF RNA polymerase sigma factor SigW,ECF RNA polymerase sigma-E factor
Authors:Campagne, S, Vorholt, J.A, Allain, F.H.
Deposit date:2017-08-15
Release date:2018-06-27
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Engineered promoter selectivity of an ECF sigma factor
Not published
1MFY
DownloadVisualize
BU of 1mfy by Molmil
SOLUTION STRUCTURE OF INFLUENZA A VIRUS C4 PROMOTER
Descriptor: C4 promoter of influneza A virus
Authors:Lee, M.-K, Bae, S.-H, Park, C.-J, Cheong, H.-K, Cheong, C, Choi, B.-S.
Deposit date:2002-08-14
Release date:2002-09-18
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:A single-nucleotide natural variation (U4 to C4) in an influenza A virus promoter exhibits a large structural change: implications for differential viral RNA synthesis by RNA-dependent RNA polymerase.
Nucleic Acids Res., 31, 2003

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon