PDB: 45953 resultsInfo pagesStatus searchChemie searchBIRD

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6ERQ	Structure of the human mitochondrial transcription initiation complex at the HSP promoter Descriptor: DNA-directed RNA polymerase, mitochondrial, Dimethyladenosine transferase 2, ... Authors: Hillen, H.S, Morozov, Y.I, Sarfallah, A, Temiakov, D, Cramer, P. Deposit date: 2017-10-18 Release date: 2017-11-15 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (4.5 Å) Cite: Structural Basis of Mitochondrial Transcription Initiation. Cell, 171, 2017
1R5U	RNA POLYMERASE II TFIIB COMPLEX Descriptor: DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerase II 14.2 kDa polypeptide, DNA-directed RNA polymerase II 140 kDa polypeptide, ... Authors: Bushnell, D.A, Westover, K.D, Davis, R, Kornberg, R.D. Deposit date: 2003-10-13 Release date: 2004-02-17 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (4.5 Å) Cite: Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms. Science, 303, 2004
6ZHX	Cryo-EM structure of the regulatory linker of ALC1 bound to the nucleosome's acidic patch: nucleosome class. Descriptor: Chromodomain-helicase-DNA-binding protein 1-like, DNA (145-MER) Widom 601 sequence, Histone H2A type 1, ... Authors: Bacic, L, Gaullier, G, Croll, T.I, Deindl, S. Deposit date: 2020-06-24 Release date: 2020-12-23 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: Mechanistic Insights into Regulation of the ALC1 Remodeler by the Nucleosome Acidic Patch. Cell Rep, 33, 2020
6FLP	CryoEM structure of E.coli RNA polymerase paused elongation complex without RNA hairpin bound to NusA Descriptor: DNA (30-MER), DNA (39-MER), DNA-directed RNA polymerase subunit alpha, ... Authors: Guo, X, Weixlbaumer, A. Deposit date: 2018-01-26 Release date: 2018-03-07 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Structural Basis for NusA Stabilized Transcriptional Pausing. Mol. Cell, 69, 2018
6ZHY	Cryo-EM structure of the regulatory linker of ALC1 bound to the nucleosome's acidic patch: hexasome class. Descriptor: Chromodomain-helicase-DNA-binding protein 1-like, DNA (110-MER) Widom 601 sequence, Histone H2A type 1, ... Authors: Bacic, L, Gaullier, G, Deindl, S. Deposit date: 2020-06-24 Release date: 2020-12-23 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (3 Å) Cite: Mechanistic Insights into Regulation of the ALC1 Remodeler by the Nucleosome Acidic Patch. Cell Rep, 33, 2020
6ERP	Structure of the human mitochondrial transcription initiation complex at the LSP promoter Descriptor: DNA-directed RNA polymerase, mitochondrial, Dimethyladenosine transferase 2, ... Authors: Hillen, H.S, Morozov, Y.I, Sarfallah, A, Temiakov, D, Cramer, P. Deposit date: 2017-10-18 Release date: 2017-11-15 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (4.502 Å) Cite: Structural Basis of Mitochondrial Transcription Initiation. Cell, 171, 2017
1TWF	RNA polymerase II complexed with UTP at 2.3 A resolution Descriptor: DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerase II 14.2 kDa polypeptide, DNA-directed RNA polymerase II 140 kDa polypeptide, ... Authors: Westover, K.D, Bushnell, D.A, Kornberg, R.D. Deposit date: 2004-06-30 Release date: 2004-11-16 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center. Cell(Cambridge,Mass.), 119, 2004
3RB3	Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 1-methylguanine (m1g) lesion Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, ... Authors: Rechkoblit, O, Patel, D.J. Deposit date: 2011-03-28 Release date: 2011-06-15 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Implications for damage recognition during Dpo4-mediated mutagenic bypass of m1G and m3C lesions. Structure, 19, 2011
3RBD	Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 3-methylcytosine (m3c) lesion Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, ... Authors: Rechkoblit, O, Patel, D.J. Deposit date: 2011-03-29 Release date: 2011-06-15 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.502 Å) Cite: Implications for damage recognition during Dpo4-mediated mutagenic bypass of m1G and m3C lesions. Structure, 19, 2011
3RAX	Dpo4 extension ternary complex with 3'-terminal primer T base opposite the 1-methylguanine (M1G) lesion Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*CP*CP*TP*AP*AP*CP*(MG1)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3'), ... Authors: Rechkoblit, O, Patel, D.J. Deposit date: 2011-03-28 Release date: 2011-06-15 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.891 Å) Cite: Implications for damage recognition during Dpo4-mediated mutagenic bypass of m1G and m3C lesions. Structure, 19, 2011
1TWC	RNA polymerase II complexed with GTP Descriptor: DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE, DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerase II 140 kDa polypeptide, ... Authors: Westover, K.D, Bushnell, D.A, Kornberg, R.D. Deposit date: 2004-06-30 Release date: 2004-11-16 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center. Cell(Cambridge,Mass.), 119, 2004
3RB4	Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 3-methylcytosine (m3c) lesion Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*C*CP*TP*AP*AP*CP*(ME6)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3'), ... Authors: Rechkoblit, O, Patel, D.J. Deposit date: 2011-03-28 Release date: 2011-06-15 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.805 Å) Cite: Implications for damage recognition during Dpo4-mediated mutagenic bypass of m1G and m3C lesions. Structure, 19, 2011
3RBE	Dpo4 extension ternary complex with 3'-terminal primer t base opposite the 3-methylcytosine (m3c) lesion Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*C*CP*TP*AP*AP*CP*(ME6)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3'), ... Authors: Rechkoblit, O, Patel, D.J. Deposit date: 2011-03-29 Release date: 2011-06-15 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Implications for damage recognition during Dpo4-mediated mutagenic bypass of m1G and m3C lesions. Structure, 19, 2011
3RB0	Dpo4 extension ternary complex with 3'-terminal primer G base opposite the 1-methylguanine (M1G) lesion Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*C*CP*TP*AP*AP*CP*(MG1)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3'), ... Authors: Rechkoblit, O, Patel, D.J. Deposit date: 2011-03-28 Release date: 2011-06-15 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.225 Å) Cite: Implications for damage recognition during Dpo4-mediated mutagenic bypass of m1G and m3C lesions. Structure, 19, 2011
3RB6	Dpo4 extension ternary complex with 3'-terminal primer A base opposite the 3-methylcytosine (m3c) lesion Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, ... Authors: Rechkoblit, O, Patel, D.J. Deposit date: 2011-03-28 Release date: 2011-06-15 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Implications for damage recognition during Dpo4-mediated mutagenic bypass of m1G and m3C lesions. Structure, 19, 2011
7U0J	Structure of 162bp LIN28b nucleosome Descriptor: DNA (162-MER), Histone H2A type 2-C, Histone H2B type 2-E, ... Authors: Lian, T, Guan, R, Bai, Y. Deposit date: 2022-02-18 Release date: 2023-06-28 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Structural mechanism of LIN28B nucleosome targeting by OCT4. Mol.Cell, 83, 2023
8SPS	High resolution structure of ESRRB nucleosome bound OCT4 at site a and site b Descriptor: DNA (168-MER), Histone H2A type 2-C, Histone H2B type 2-E, ... Authors: Lian, T, Guan, R, Bai, Y. Deposit date: 2023-05-03 Release date: 2023-06-28 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural mechanism of LIN28B nucleosome targeting by OCT4. Mol.Cell, 83, 2023
8SPU	Structure of ESRRB nucleosome bound OCT4 at site c Descriptor: DNA (168-MER), Histone H2A type 2-C, Histone H2B type 2-E, ... Authors: Lian, T, Guan, R, Bai, Y. Deposit date: 2023-05-03 Release date: 2023-06-28 Last modified: 2024-02-07 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Structural mechanism of LIN28B nucleosome targeting by OCT4. Mol.Cell, 83, 2023
4TMA	Crystal structure of gyrase bound to its inhibitor YacG Descriptor: DNA gyrase inhibitor YacG, DNA gyrase subunit A, DNA gyrase subunit B, ... Authors: Vos, S.M, Lyubimov, A.Y, Hershey, D.M, Schoeffler, A.J, Berger, J.M. Deposit date: 2014-05-31 Release date: 2014-07-23 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Direct control of type IIA topoisomerase activity by a chromosomally encoded regulatory protein. Genes Dev., 28, 2014
3GTL	Backtracked RNA polymerase II complex with 13mer with G<>U mismatch Descriptor: DNA (28-MER), DNA (5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, ... Authors: Wang, D, Bushnell, D.A, Huang, X, Westover, K.D, Levitt, M, Kornberg, R.D. Deposit date: 2009-03-27 Release date: 2009-06-09 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.38 Å) Cite: Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution. Science, 324, 2009
7OGP	Structure of the apo-state of the bacteriophage PhiKZ non-virion RNA polymerase - class including clamp Descriptor: DNA-directed RNA polymerase, PHIKZ055, PHIKZ068, ... Authors: de Martin Garrido, N, Lai Wan Loong, Y.T.E, Yakunina, M, Aylett, C.H.S. Deposit date: 2021-05-07 Release date: 2021-07-07 Last modified: 2023-11-22 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structure of the bacteriophage PhiKZ non-virion RNA polymerase. Nucleic Acids Res., 49, 2021
8CRO	Cryo-EM structure of Pyrococcus furiosus transcription elongation complex Descriptor: DNA Non-Template Strand, DNA Template Strand, DNA-directed RNA polymerase subunit Rpo10, ... Authors: Tarau, D.M, Grunberger, F, Reichelt, R, Heiss, F.B, Pilsl, M, Hausner, W, Engel, C, Grohmann, D. Deposit date: 2023-03-08 Release date: 2024-04-17 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural basis of archaeal RNA polymerase transcription elongation and Spt4/5 recruitment. Nucleic Acids Res., 52, 2024
6QCG	PCNA complex with Cdt1 N-terminal PIP-box peptide Descriptor: DNA replication factor Cdt1, Proliferating cell nuclear antigen Authors: Perrakis, A, von Castelmur, E. Deposit date: 2018-12-28 Release date: 2019-01-23 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Direct binding of Cdt2 to PCNA is important for targeting the CRL4Cdt2E3 ligase activity to Cdt1. Life Sci Alliance, 1, 2018
3KET	Crystal structure of a Rex-family transcriptional regulatory protein from Streptococcus agalactiae bound to a palindromic operator Descriptor: DNA (5'-D(*AP*AP*TP*TP*GP*TP*GP*AP*AP*AP*T)-3'), DNA (5'-D(P*AP*TP*TP*TP*CP*AP*CP*AP*AP*TP*T)-3'), MAGNESIUM ION, ... Authors: Thiyagarajan, S, Logan, D, von Wachenfeldt, C. Deposit date: 2009-10-26 Release date: 2010-11-10 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.4 Å) Cite: NAD+ pool depletion as a signal for the Rex regulon involved in Streptococcus agalactiae virulence. Plos Pathog., 17, 2021
6YI2	UvrD helicase RNA polymerase interactions are governed by UvrDs carboxy terminal Tudor domain. Descriptor: DNA helicase Authors: Kawale, A.A, Burmann, B.B. Deposit date: 2020-03-31 Release date: 2020-10-21 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: UvrD helicase-RNA polymerase interactions are governed by UvrD's carboxy-terminal Tudor domain. Commun Biol, 3, 2020

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