PDB: 72960 resultsInfo pagesStatus searchChemie searchBIRD

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3HGA	Crystal Structure of 4-Se-Uridine Derivatized RNA Descriptor: 5'-R(*UP*(US5)P*CP*GP*CP*G)-3' Authors: Sheng, J, Soares, A, Huang, Z. Deposit date: 2009-05-13 Release date: 2009-08-18 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Oxygen Replacement with Selenium at the Uridine 4-Position for RNA Structure Study and Visualization To be Published
6LDS	Structure of a K245A mutant of L-tyrosine decarboxylase from Methanocaldococcus jannaschii complexed with L-Tyr: External aldimine form Descriptor: GLYCEROL, L-tyrosine/L-aspartate decarboxylase, N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-tyrosine, ... Authors: Manoj, N, Gayathri, S.C. Deposit date: 2019-11-23 Release date: 2020-12-02 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural insights into the mechanism of internal aldimine formation and catalytic loop dynamics in an archaeal Group II decarboxylase. J.Struct.Biol., 208, 2019
6MID	Cryo-EM structure of the ZIKV virion in complex with Fab fragments of the potently neutralizing human monoclonal antibody ZIKV-195 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, E protein, M protein, ... Authors: Long, F, Rossmann, M.G. Deposit date: 2018-09-19 Release date: 2019-01-16 Last modified: 2020-07-29 Method: ELECTRON MICROSCOPY (4 Å) Cite: Structural basis of a potent human monoclonal antibody against Zika virus targeting a quaternary epitope. Proc. Natl. Acad. Sci. U.S.A., 116, 2019
8AZT	Type II amyloid-beta 42 filaments from high-spin supernatants of aqueous extracts from Alzheimer's disease brains | ABeta42 Descriptor: Amyloid-beta precursor protein Authors: Yang, Y, Stern, M.A, Meunier, L.A, Liu, W, Cai, Y.Q, Ericsson, M, Liu, L, Selkoe, J.D, Goedert, M, Scheres, H.W.S. Deposit date: 2022-09-06 Release date: 2022-11-02 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Abundant A beta fibrils in ultracentrifugal supernatants of aqueous extracts from Alzheimer's disease brains. Neuron, 111, 2023
5X20	The ternary structure of D-mandelate dehydrogenase with NADH and anilino(oxo)acetate Descriptor: 2-dehydropantoate 2-reductase, 2-oxidanylidene-2-phenylazanyl-ethanoic acid, GLYCEROL, ... Authors: Furukawa, N, Miyanaga, A, Nakajima, M, Taguchi, H. Deposit date: 2017-01-29 Release date: 2017-04-05 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.4 Å) Cite: The ternary complex structure of d-mandelate dehydrogenase with NADH and anilino(oxo)acetate. Biochem. Biophys. Res. Commun., 486, 2017
6KG1	NifS from Helicobacter pylori, soaked with L-cysteine for 180 sec Descriptor: 2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID, CHLORIDE ION, Cysteine desulfurase IscS, ... Authors: Nakamura, R, Takahashi, Y, Fujishiro, T. Deposit date: 2019-07-09 Release date: 2019-10-16 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes. Febs J., 287, 2020
6KG0	NifS from Helicobacter pylori, soaked with L-cysteine for 118 sec Descriptor: CHLORIDE ION, Cysteine desulfurase IscS, ISOPROPYL ALCOHOL, ... Authors: Nakamura, R, Takahashi, Y, Fujishiro, T. Deposit date: 2019-07-09 Release date: 2019-10-16 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.78 Å) Cite: Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes. Febs J., 287, 2020
6KFZ	SufS from Bacillus subtilis, soaked with L-cysteine for 90 sec at 1.96 angstrom resolution Descriptor: Cysteine desulfurase SufS, DI(HYDROXYETHYL)ETHER, N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-CYSTEINE Authors: Nakamura, R, Takahashi, Y, Fujishiro, T. Deposit date: 2019-07-09 Release date: 2019-10-16 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.96 Å) Cite: Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes. Febs J., 287, 2020
7PGB	NaV_Ae1/Sp1CTD_pore-SAT09 complex Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, 4-NITROBENZOIC ACID, ... Authors: Lolicato, M, Arrigoni, C. Deposit date: 2021-08-13 Release date: 2022-06-08 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Quaternary structure independent folding of voltage-gated ion channel pore domain subunits. Nat.Struct.Mol.Biol., 29, 2022
7PG8	NaV_Ae1/Sp1CTD_pore-ANT05 complex Descriptor: ANT05 H12 fab fragment, heavy chain, light chain, ... Authors: Lolicato, M, Arrigoni, C. Deposit date: 2021-08-13 Release date: 2022-06-08 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (4.5 Å) Cite: Quaternary structure independent folding of voltage-gated ion channel pore domain subunits. Nat.Struct.Mol.Biol., 29, 2022
7PGF	Calcium-selective Sp1 channel pore domain only Descriptor: Ion transporter Authors: Lolicato, M, Arrigoni, C. Deposit date: 2021-08-13 Release date: 2022-06-08 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Quaternary structure independent folding of voltage-gated ion channel pore domain subunits. Nat.Struct.Mol.Biol., 29, 2022
7PGI	NaVAb1p (bicelles) Descriptor: ACETATE ION, Ion transport protein, MAGNESIUM ION, ... Authors: Lolicato, M, Arrigoni, C. Deposit date: 2021-08-14 Release date: 2022-06-08 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (3.638 Å) Cite: Quaternary structure independent folding of voltage-gated ion channel pore domain subunits. Nat.Struct.Mol.Biol., 29, 2022
7PGH	NaVAe1/Sp1CTDp (DDM) Descriptor: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, DODECAETHYLENE GLYCOL, DODECANE, ... Authors: Lolicato, M, Arrigoni, C. Deposit date: 2021-08-14 Release date: 2022-06-15 Last modified: 2022-06-29 Method: X-RAY DIFFRACTION (4.194 Å) Cite: Quaternary structure independent folding of voltage-gated ion channel pore domain subunits. Nat.Struct.Mol.Biol., 29, 2022
7PGG	NaVAb1p detergent (DM) Descriptor: 2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}ethyl heptadecanoate, Ion transport protein Authors: Lolicato, M, Arrigoni, C. Deposit date: 2021-08-13 Release date: 2022-06-15 Last modified: 2022-06-29 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Quaternary structure independent folding of voltage-gated ion channel pore domain subunits. Nat.Struct.Mol.Biol., 29, 2022
2ZXI	Structure of Aquifex aeolicus GidA in the form II crystal Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG Authors: Numata, T, Osawa, T. Deposit date: 2008-12-24 Release date: 2009-05-19 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Conserved cysteine residues of GidA are essential for biogenesis of 5-carboxymethylaminomethyluridine at tRNA anticodon Structure, 17, 2009
2ZXH	Structure of Aquifex aeolicus GidA in the form I crystal Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION, tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG Authors: Numata, T, Osawa, T. Deposit date: 2008-12-24 Release date: 2009-05-19 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Conserved cysteine residues of GidA are essential for biogenesis of 5-carboxymethylaminomethyluridine at tRNA anticodon Structure, 17, 2009
8C3G	Crystal structure of DYRK1A in complex with AZ191 Descriptor: 1,2-ETHANEDIOL, Dual specificity tyrosine-phosphorylation-regulated kinase 1A, N-[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]-4-(1-methylpyrrolo[2,3-c]pyridin-3-yl)pyrimidin-2-amine, ... Authors: Grygier, P, Pustelny, K, Dubin, G, Czarna, A. Deposit date: 2022-12-23 Release date: 2024-01-10 Method: X-RAY DIFFRACTION (2.08 Å) Cite: Structural perspective on the design of selective DYRK1B inhibitors To Be Published
8C3Q	Crystal structure of DYRK1A in complex with rutin Descriptor: Dual specificity tyrosine-phosphorylation-regulated kinase 1A, RUTIN Authors: Grygier, P, Pustelny, K, Dubin, G, Czarna, A. Deposit date: 2022-12-28 Release date: 2024-01-10 Method: X-RAY DIFFRACTION (2.32 Å) Cite: Crystal structure of DYRK1A in complex with rutin To Be Published
8C3R	Crystal structure of DYRK1A in complex with gossypin Descriptor: ACETATE ION, Dual specificity tyrosine-phosphorylation-regulated kinase 1A, Gossypin Authors: Grygier, P, Pustelny, K, Dubin, G, Czarna, A. Deposit date: 2022-12-28 Release date: 2024-01-10 Method: X-RAY DIFFRACTION (2.06 Å) Cite: Crystal structure of DYRK1A in complex with gossypin To Be Published
8C2Z	Crystal structure of DYRK1B in complex with AZ191 Descriptor: Dual specificity tyrosine-phosphorylation-regulated kinase 1B, MANGANESE (II) ION, N-[2-methoxy-4-(4-methylpiperazin-1-yl)phenyl]-4-(1-methylpyrrolo[2,3-c]pyridin-3-yl)pyrimidin-2-amine Authors: Grygier, P, Pustelny, K, Dubin, G, Czarna, A. Deposit date: 2022-12-23 Release date: 2024-01-17 Method: X-RAY DIFFRACTION (1.91 Å) Cite: Structural perspective on the design of selective DYRK1B inhibitors To Be Published
6P9W	Poliovirus (Type 1 Mahoney), receptor catalysed 135S particle map Descriptor: VP1, VP2, VP3 Authors: Hogle, J.M, Filman, D.J, Shah, P.N.M. Deposit date: 2019-06-10 Release date: 2020-06-10 Last modified: 2020-10-21 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Cryo-EM structures reveal two distinct conformational states in a picornavirus cell entry intermediate. Plos Pathog., 16, 2020
6P9O	Poliovirus 135S-like expanded particle in complex with a monoclonal antibody directed against the N-terminal extension of capsid protein VP1 Descriptor: VP1, VP2, VP3 Authors: Hogle, J.M, Filman, D.J, Shah, P.N.M. Deposit date: 2019-06-10 Release date: 2020-06-10 Last modified: 2020-10-21 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Cryo-EM structures reveal two distinct conformational states in a picornavirus cell entry intermediate. Plos Pathog., 16, 2020
4EUL	Crystal structure of enhanced Green Fluorescent Protein to 1.35A resolution reveals alternative conformations for Glu222 Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, Green fluorescent protein, ... Authors: Jones, D.D, Arpino, J.A.J, Rizkallah, P.J. Deposit date: 2012-04-25 Release date: 2012-10-03 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (1.35 Å) Cite: Crystal structure of enhanced green fluorescent protein to 1.35 a resolution reveals alternative conformations for glu222. Plos One, 7, 2012
4WHM	Crystal structure of UDP-glucose: anthocyanidin 3-O-glucosyltransferase in complex with UDP Descriptor: ACETATE ION, GLYCEROL, UDP-glucose:anthocyanidin 3-O-glucosyltransferase, ... Authors: Hiromoto, T, Honjo, E, Tamada, T, Kuroki, R. Deposit date: 2014-09-23 Release date: 2015-01-21 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.851 Å) Cite: Structural basis for acceptor-substrate recognition of UDP-glucose: anthocyanidin 3-O-glucosyltransferase from Clitoria ternatea Protein Sci., 24, 2015
6PSZ	Poliovirus (Type 1 Mahoney), heat-catalysed 135S particle Descriptor: VP1, VP2, VP3 Authors: Hogle, J.M, Filman, D.J, Shah, P.N.M. Deposit date: 2019-07-14 Release date: 2020-07-15 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Cryo-EM structures reveal two distinct conformational states in a picornavirus cell entry intermediate. Plos Pathog., 16, 2020

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