Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7M3R
DownloadVisualize
BU of 7m3r by Molmil
Crystallographic Structure of the Rhombohedral Crystal Form of STMV Grown from Bromide
Descriptor: BROMIDE ION, Coat protein, MAGNESIUM ION
Authors:McPherson, A.
Deposit date:2021-03-18
Release date:2021-12-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of additional crystal forms of Satellite tobacco mosaic virus grown from a variety of salts.
Acta Crystallogr.,Sect.F, 77, 2021
7M54
DownloadVisualize
BU of 7m54 by Molmil
Crystallographic structure of a cubic crystal form of STMV grown from bromide
Descriptor: BROMIDE ION, CALCIUM ION, CHLORIDE ION, ...
Authors:McPherson, A.
Deposit date:2021-03-22
Release date:2021-12-15
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Structures of additional crystal forms of Satellite tobacco mosaic virus grown from a variety of salts.
Acta Crystallogr.,Sect.F, 77, 2021
2OQY
DownloadVisualize
BU of 2oqy by Molmil
The crystal structure of muconate cycloisomerase from Oceanobacillus iheyensis
Descriptor: MAGNESIUM ION, Muconate cycloisomerase
Authors:Fedorov, A.A, Toro, R, Fedorov, E.V, Bonanno, J, Sauder, J.M, Burley, S.K, Gerlt, J.A, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2007-02-01
Release date:2007-03-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Computation-facilitated assignment of the function in the enolase superfamily: a regiochemically distinct galactarate dehydratase from Oceanobacillus iheyensis .
Biochemistry, 48, 2009
4DXY
DownloadVisualize
BU of 4dxy by Molmil
Crystal structures of CYP101D2 Y96A mutant
Descriptor: Cytochrome P450, DI(HYDROXYETHYL)ETHER, PROTOPORPHYRIN IX CONTAINING FE
Authors:Zhou, W, Bell, S.G, Yang, W, Dale, A, Wong, L.-L.
Deposit date:2012-02-28
Release date:2012-08-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Improving the affinity and activity of CYP101D2 for hydrophobic substrates
Appl.Microbiol.Biotechnol., 2012
3MYM
DownloadVisualize
BU of 3mym by Molmil
Mutation of Methionine-86 in Dehaloperoxidase-hemoglobin: Effects of the Asp-His-Fe Triad in a 3/3 Globin
Descriptor: CYANIDE ION, Dehaloperoxidase A, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:de Serrano, V.S, D'Antonio, E.L, Franzen, S, Bowden, E.F.
Deposit date:2010-05-10
Release date:2011-04-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Functional consequences of the creation of an Asp-His-Fe triad in a 3/3 globin.
Biochemistry, 50, 2011
5AN1
DownloadVisualize
BU of 5an1 by Molmil
Crystallographic structure of the Glutathione S-Transferase from Litopenaeus vannamei complexed with Glutathione
Descriptor: GLUTATHIONE, GLUTATHIONE S-TRANSFERASE
Authors:Juarez-Martinez, A.B, Sotelo-Mundo, R, Rudino-Pinera, E.
Deposit date:2015-09-02
Release date:2016-10-12
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a class-mu glutathione S-transferase from whiteleg shrimp Litopenaeus vannamei: structural changes in the xenobiotic binding H-site may alter the spectra of molecules bound.
J. Biochem. Mol. Toxicol., 31, 2017
6F6Z
DownloadVisualize
BU of 6f6z by Molmil
Mouse Thymidylate Synthase Cocrystallized with N(4)OHdCMP and Soaked in Methylenetetrahydrofolate
Descriptor: (2~{S})-2-[[4-[[(6~{R})-2-azanyl-4-oxidanylidene-5,6,7,8-tetrahydro-1~{H}-pteridin-6-yl]methyl-methyl-amino]phenyl]carbonylamino]pentanedioic acid, 2'-deoxy-N-hydroxycytidine 5'-(dihydrogen phosphate), Thymidylate synthase
Authors:Wilk, P, Jarmula, A, Maj, P, Rode, W.
Deposit date:2017-12-06
Release date:2019-01-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.127 Å)
Cite:Molecular Mechanism of Thymidylate Synthase Inhibition by N4-Hydroxy-dCMP in View of Spectrophotometric and Crystallographic Studies
Int J Mol Sci, 22, 2021
1DD4
DownloadVisualize
BU of 1dd4 by Molmil
Crystal structure of ribosomal protein l12 from thermotoga maritim
Descriptor: 50S RIBOSOMAL PROTEIN L7/L12, HEXATANTALUM DODECABROMIDE
Authors:Wahl, M.C, Bourenkov, G.P, Bartunik, H.D, Huber, R.
Deposit date:1999-11-08
Release date:2000-11-13
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Flexibility, conformational diversity and two dimerization modes in complexes of ribosomal protein L12.
Embo J., 19, 2000
4IRM
DownloadVisualize
BU of 4irm by Molmil
Crystal structure of mntc r116a mutant exhibits flexibility in the c-terminal domain
Descriptor: MANGANESE (II) ION, Mn transporter; MntC
Authors:Kanteev, M, Adir, N.
Deposit date:2013-01-15
Release date:2013-02-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Arginine 116 stabilizes the entrance to the metal ion-binding site of the MntC protein.
Acta Crystallogr.,Sect.F, 69, 2013
2P3X
DownloadVisualize
BU of 2p3x by Molmil
Crystal structure of Grenache (Vitis vinifera) Polyphenol Oxidase
Descriptor: CU-O-CU LINKAGE, Polyphenol oxidase, chloroplast
Authors:Reyes Grajeda, J.P, Virador, V.M, Blanco-Labra, A, Mendiola-Olaya, E, Smith, G.M, Moreno, A, Whitaker, J.R.
Deposit date:2007-03-09
Release date:2008-03-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Cloning, sequencing, purification, and crystal structure of Grenache (Vitis vinifera) polyphenol oxidase.
J.Agric.Food Chem., 58, 2010
2L0P
DownloadVisualize
BU of 2l0p by Molmil
Solution structure of human apo-S100A1 protein by NMR spectroscopy
Descriptor: S100 calcium binding protein A1
Authors:Nowakowski, M, Jaremko, L, Jaremko, M, Bierzynski, A, Zhukov, I, Ejchart, A.
Deposit date:2010-07-12
Release date:2011-04-20
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution NMR structure and dynamics of human apo-S100A1 protein.
J.Struct.Biol., 174, 2011
2PFG
DownloadVisualize
BU of 2pfg by Molmil
Crystal structure of human CBR1 in complex with BiGF2.
Descriptor: (5R,10S)-5-{[(CARBOXYMETHYL)AMINO]CARBONYL}-7-OXO-3-THIA-1,6-DIAZABICYCLO[4.4.1]UNDECANE-10-CARBOXYLIC ACID, CHLORIDE ION, Carbonyl reductase [NADPH] 1, ...
Authors:Rauh, D, Bateman, R.L, Shokat, K.M.
Deposit date:2007-04-04
Release date:2007-09-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Glutathione traps formaldehyde by formation of a bicyclo[4.4.1]undecane adduct.
Org.Biomol.Chem., 5, 2007
1GCY
DownloadVisualize
BU of 1gcy by Molmil
HIGH RESOLUTION CRYSTAL STRUCTURE OF MALTOTETRAOSE-FORMING EXO-AMYLASE
Descriptor: CALCIUM ION, GLUCAN 1,4-ALPHA-MALTOTETRAHYDROLASE
Authors:Mezaki, Y, Katsuya, Y, Kubota, M, Matsuura, Y.
Deposit date:2000-08-14
Release date:2000-08-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystallization and structural analysis of intact maltotetraose-forming exo-amylase from Pseudomonas stutzeri.
Biosci.Biotechnol.Biochem., 65, 2001
1UNO
DownloadVisualize
BU of 1uno by Molmil
Crystal structure of a d,l-alternating peptide
Descriptor: H-(L-TYR-D-TYR)4-LYS-OH
Authors:Alexopoulos, E, Kuesel, A, Uson, I, Diederichsen, U, Sheldrick, G.M.
Deposit date:2003-09-11
Release date:2004-09-24
Last modified:2019-07-24
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Solution and Structure of an Alternating D,L-Peptide
Acta Crystallogr.,Sect.D, 60, 2004
2MNI
DownloadVisualize
BU of 2mni by Molmil
Chemical Shift Assignments and structure of Q4D059, a hypothetical protein from Trypanosoma cruzi
Descriptor: HP_Q4D059
Authors:Lopez, A, Pires, J.
Deposit date:2014-04-07
Release date:2015-03-18
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR structure and dynamics of Q4D059, a kinetoplastid-specific and conserved protein from Trypanosoma cruzi.
J.Struct.Biol., 190, 2015
3LQ6
DownloadVisualize
BU of 3lq6 by Molmil
Crystal Structure of Murine Norovirus Protruding (P) Domain
Descriptor: Capsid protein
Authors:Rubin, J.R, Stuckey, J.A.
Deposit date:2010-02-08
Release date:2010-04-21
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:High-resolution x-ray structure and functional analysis of the murine norovirus 1 capsid protein protruding domain.
J.Virol., 84, 2010
3LZX
DownloadVisualize
BU of 3lzx by Molmil
Crystal structure of ferredoxin-NADP+ oxidoreductase from Bacillus subtilis (FORM II)
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin--NADP reductase 2, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Komori, H, Seo, D, Sakurai, T, Higuchi, Y.
Deposit date:2010-03-02
Release date:2010-12-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure analysis of Bacillus subtilis ferredoxin-NADP(+) oxidoreductase and the structural basis for its substrate selectivity
Protein Sci., 19, 2010
3HPA
DownloadVisualize
BU of 3hpa by Molmil
Crystal structure of an amidohydrolase gi:44264246 from an evironmental sample of sargasso sea
Descriptor: AMIDOHYDROLASE, ZINC ION
Authors:Fedorov, A.A, Fedorov, E.V, Toro, R, Raushel, F.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-06-03
Release date:2009-06-16
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The hunt for 8-oxoguanine deaminase.
J.Am.Chem.Soc., 132, 2010
3JBH
DownloadVisualize
BU of 3jbh by Molmil
TWO HEAVY MEROMYOSIN INTERACTING-HEADS MOTIFS FLEXIBLE DOCKED INTO TARANTULA THICK FILAMENT 3D-MAP ALLOWS IN DEPTH STUDY OF INTRA- AND INTERMOLECULAR INTERACTIONS
Descriptor: MYOSIN 2 ESSENTIAL LIGHT CHAIN STRIATED MUSCLE, MYOSIN 2 HEAVY CHAIN STRIATED MUSCLE, MYOSIN 2 REGULATORY LIGHT CHAIN STRIATED MUSCLE
Authors:Alamo, L, Qi, D, Wriggers, W, Pinto, A, Zhu, J, Bilbao, A, Gillilan, R.E, Hu, S, Padron, R.
Deposit date:2015-09-01
Release date:2016-03-09
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (20 Å)
Cite:Conserved Intramolecular Interactions Maintain Myosin Interacting-Heads Motifs Explaining Tarantula Muscle Super-Relaxed State Structural Basis.
J. Mol. Biol., 428, 2016
6ISD
DownloadVisualize
BU of 6isd by Molmil
Crystal structure of Arabidopsis thaliana HPPD complexed with sulcotrione
Descriptor: 2-[2-chloro-4-(methylsulfonyl)benzoyl]cyclohexane-1,3-dione, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
Authors:Yang, W.C, Yang, G.F.
Deposit date:2018-11-16
Release date:2018-11-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Molecular insights into the mechanism of 4-hydroxyphenylpyruvate dioxygenase inhibition: enzyme kinetics, X-ray crystallography and computational simulations.
FEBS J., 286, 2019
3I17
DownloadVisualize
BU of 3i17 by Molmil
Crystal structure of the apo R132K:L121E mutant of cellular retinoic acid-binding protein II at 1.68 angstrom resolution
Descriptor: Cellular retinoic acid-binding protein 2
Authors:Jia, X, Watson, C.T, Geiger, J.H.
Deposit date:2009-06-25
Release date:2009-07-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Elucidating the exact role of engineered CRABPII residues for the formation of a retinal protonated Schiff base.
Proteins, 77, 2009
6J63
DownloadVisualize
BU of 6j63 by Molmil
Crystal structure of Arabidopsis thaliana HPPD complexed with NTBC
Descriptor: 2-{HYDROXY[2-NITRO-4-(TRIFLUOROMETHYL)PHENYL]METHYLENE}CYCLOHEXANE-1,3-DIONE, 4-hydroxyphenylpyruvate dioxygenase, FE (III) ION
Authors:Yang, W.C, Yang, G.F.
Deposit date:2019-01-13
Release date:2019-02-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.624 Å)
Cite:Molecular insights into the mechanism of 4-hydroxyphenylpyruvate dioxygenase inhibition: enzyme kinetics, X-ray crystallography and computational simulations.
FEBS J., 286, 2019
3FEQ
DownloadVisualize
BU of 3feq by Molmil
Crystal structure of uncharacterized protein eah89906
Descriptor: PUTATIVE AMIDOHYDROLASE, ZINC ION
Authors:Patskovsky, Y, Bonanno, J, Romero, R, Freeman, J, Lau, C, Smith, D, Bain, K, Wasserman, S.R, Raushel, F, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2008-11-30
Release date:2008-12-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Functional identification and structure determination of two novel prolidases from cog1228 in the amidohydrolase superfamily .
Biochemistry, 49, 2010
2PD5
DownloadVisualize
BU of 2pd5 by Molmil
Human aldose reductase mutant V47I complexed with zopolrestat
Descriptor: 3,4-DIHYDRO-4-OXO-3-((5-TRIFLUOROMETHYL-2-BENZOTHIAZOLYL)METHYL)-1-PHTHALAZINE ACETIC ACID, Aldose reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Steuber, H, Heine, A, Klebe, G.
Deposit date:2007-03-31
Release date:2008-04-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Merging the binding sites of aldose and aldehyde reductase for detection of inhibitor selectivity-determining features.
J.Mol.Biol., 379, 2008
2PDC
DownloadVisualize
BU of 2pdc by Molmil
Human aldose reductase mutant F121P complexed with IDD393.
Descriptor: (5-CHLORO-2-{[(3-NITROBENZYL)AMINO]CARBONYL}PHENOXY)ACETIC ACID, Aldose reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Steuber, H, Heine, A, Klebe, G.
Deposit date:2007-03-31
Release date:2008-04-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Merging the binding sites of aldose and aldehyde reductase for detection of inhibitor selectivity-determining features.
J.Mol.Biol., 379, 2008

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon