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5EWB
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BU of 5ewb by Molmil
Racemic crystal structures of Pribnow box consensus promoter sequence (P21/c)
Descriptor: PRIBNOW BOX CONSENSUS SEQUENCE- NON-TEMPLATE STRAND, PRIBNOW BOX CONSENSUS SEQUENCE- TEMPLATE STRAND
Authors:Mandal, P.K, Collie, G.W, Kauffmann, B, Srivastava, S.C, Huc, I.
Deposit date:2015-11-20
Release date:2016-05-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.694 Å)
Cite:Structure elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography.
Nucleic Acids Res., 44, 2016
4KFS
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BU of 4kfs by Molmil
Structure of the genome packaging NTPase B204 from Sulfolobus turreted icosahedral virus 2 in complex with AMP
Descriptor: ADENOSINE MONOPHOSPHATE, CITRATE ANION, Genome packaging NTPase B204, ...
Authors:Happonen, L.J, Oksanen, E, Kajander, T, Goldman, A, Butcher, S.
Deposit date:2013-04-27
Release date:2013-05-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.946 Å)
Cite:The Structure of the NTPase That Powers DNA Packaging into Sulfolobus Turreted Icosahedral Virus 2.
J.Virol., 87, 2013
5B2T
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BU of 5b2t by Molmil
Crystal structure of the Streptococcus pyogenes Cas9 VRER variant in complex with sgRNA and target DNA (TGCG PAM)
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CRISPR-associated endonuclease Cas9, ...
Authors:Hirano, S, Nishimasu, H, Ishitani, R, Nureki, O.
Deposit date:2016-02-02
Release date:2016-03-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Basis for the Altered PAM Specificities of Engineered CRISPR-Cas9
Mol.Cell, 61, 2016
5B2S
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BU of 5b2s by Molmil
Crystal structure of the Streptococcus pyogenes Cas9 EQR variant in complex with sgRNA and target DNA (TGAG PAM)
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CRISPR-associated endonuclease Cas9, ...
Authors:Hirano, S, Nishimasu, H, Ishitani, R, Nureki, O.
Deposit date:2016-02-02
Release date:2016-03-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Basis for the Altered PAM Specificities of Engineered CRISPR-Cas9
Mol.Cell, 61, 2016
3EH8
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BU of 3eh8 by Molmil
Crystal structure of Y2 I-AniI variant (F13Y/S111Y)/DNA complex with calcium
Descriptor: 31-MER, CALCIUM ION, Intron-encoded DNA endonuclease I-AniI
Authors:Takeuchi, R, Stoddard, B.L.
Deposit date:2008-09-11
Release date:2009-01-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Optimization of in vivo activity of a bifunctional homing endonuclease and maturase reverses evolutionary degradation.
Nucleic Acids Res., 37, 2009
5B2R
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BU of 5b2r by Molmil
Crystal structure of the Streptococcus pyogenes Cas9 VQR variant in complex with sgRNA and target DNA (TGA PAM)
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CRISPR-associated endonuclease Cas9, ...
Authors:Hirano, S, Nishimasu, H, Ishitani, R, Nureki, O.
Deposit date:2016-02-02
Release date:2016-03-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis for the Altered PAM Specificities of Engineered CRISPR-Cas9
Mol.Cell, 61, 2016
1B8Z
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BU of 1b8z by Molmil
HU FROM THERMOTOGA MARITIMA
Descriptor: PROTEIN (HISTONELIKE PROTEIN HU)
Authors:Christodoulou, E, Rypniewski, W.R, Vorgias, C.E.
Deposit date:1999-02-03
Release date:2000-02-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Cloning, overproduction, purification and crystallization of the DNA binding protein HU from the hyperthermophilic eubacterium Thermotoga maritima.
Acta Crystallogr.,Sect.D, 54, 1998
2LYH
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BU of 2lyh by Molmil
Structure of Faap24 residues 141-215
Descriptor: Fanconi anemia-associated protein of 24 kDa
Authors:Wienk, H, Slootweg, J, Kaptein, R, Boelens, R, Folkers, G.E.
Deposit date:2012-09-18
Release date:2013-05-01
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The Fanconi anemia associated protein FAAP24 uses two substrate specific binding surfaces for DNA recognition.
Nucleic Acids Res., 41, 2013
1CI4
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BU of 1ci4 by Molmil
THE CRYSTAL STRUCTURE OF HUMAN BARRIER-TO-AUTOINTEGRATION FACTOR (BAF)
Descriptor: PROTEIN (BARRIER-TO-AUTOINTEGRATION FACTOR (BAF))
Authors:Umland, T.C, Wei, S.-Q, Craigie, R, Davies, D.R.
Deposit date:1999-04-07
Release date:2000-08-16
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis of DNA bridging by barrier-to-autointegration factor.
Biochemistry, 39, 2000
5TXP
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BU of 5txp by Molmil
STRUCTURE OF Q151M complex (A62V, V75I, F77L, F116Y, Q151M) mutant HIV-1 REVERSE TRANSCRIPTASE (RT) TERNARY COMPLEX WITH A DOUBLE STRANDED DNA AND AN INCOMING DDATP
Descriptor: 1,2-ETHANEDIOL, 2',3'-dideoxyadenosine triphosphate, DNA (5'-D(*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*G)-3'), ...
Authors:Das, K, Martinez, S.M, Arnold, E.
Deposit date:2016-11-17
Release date:2017-04-05
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural Insights into HIV Reverse Transcriptase Mutations Q151M and Q151M Complex That Confer Multinucleoside Drug Resistance.
Antimicrob. Agents Chemother., 61, 2017
8USR
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BU of 8usr by Molmil
IL17A homodimer complexed to Compound 23
Descriptor: Interleukin-17A, ~{N}-[(2~{S})-1-[[(1~{S})-1-(8~{a}~{H}-imidazo[1,2-a]pyrimidin-2-yl)ethyl]amino]-1-oxidanylidene-4-phenyl-butan-2-yl]-4,5-bis(chloranyl)-1~{H}-pyrrole-2-carboxamide
Authors:Argiriadi, M.A, Ramos, A.L.
Deposit date:2023-10-29
Release date:2024-04-03
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Discovery of Small Molecule Interleukin 17A Inhibitors with Novel Binding Mode and Stoichiometry: Optimization of DNA-Encoded Chemical Library Hits to In Vivo Active Compounds.
J.Med.Chem., 67, 2024
8USS
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BU of 8uss by Molmil
IL17A complexed to Compound 7
Descriptor: 4,5-dichloro-N-[(1S)-1-cyclohexyl-2-{[(3S)-5-methyl-4-oxo-2,3,4,5-tetrahydro-1,5-benzoxazepin-3-yl]amino}-2-oxoethyl]-1H-pyrrole-2-carboxamide, CHLORIDE ION, Interleukin-17A
Authors:Argiriadi, M.A, Ramos, A.L.
Deposit date:2023-10-29
Release date:2024-04-03
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Discovery of Small Molecule Interleukin 17A Inhibitors with Novel Binding Mode and Stoichiometry: Optimization of DNA-Encoded Chemical Library Hits to In Vivo Active Compounds.
J.Med.Chem., 67, 2024
6WKK
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BU of 6wkk by Molmil
Phage G gp27 major capsid proteins and gp26 decoration proteins
Descriptor: Gp26 capsid decoration protein, Gp27 major capsid protein
Authors:Monroe, L, Gonzalez, B, Jiang, W, Kihara, D.
Deposit date:2020-04-16
Release date:2020-06-10
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (6.1 Å)
Cite:Phage G Structure at 6.1 angstrom Resolution, Condensed DNA, and Host Identity Revision to a Lysinibacillus.
J.Mol.Biol., 432, 2020
8H9D
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BU of 8h9d by Molmil
Crystal structure of Cas12a protein
Descriptor: Cas12A, MAGNESIUM ION, RNA (5'-R(P*AP*AP*UP*UP*UP*CP*UP*AP*CP*UP*AP*AP*GP*UP*GP*UP*AP*GP*AP*UP*C)-3'), ...
Authors:Jianwei, L, Jobichen, C, Sivaraman, J.
Deposit date:2022-10-25
Release date:2023-02-08
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structures of apo Cas12a and its complex with crRNA and DNA reveal the dynamics of ternary complex formation and target DNA cleavage.
Plos Biol., 21, 2023
7CSV
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BU of 7csv by Molmil
Pseudomonas aeruginosa antitoxin HigA
Descriptor: HTH cro/C1-type domain-containing protein
Authors:Song, Y.J, Luo, G.H, Bao, R.
Deposit date:2020-08-17
Release date:2021-01-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Pseudomonas aeruginosa antitoxin HigA functions as a diverse regulatory factor by recognizing specific pseudopalindromic DNA motifs.
Environ.Microbiol., 23, 2021
8H1J
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BU of 8h1j by Molmil
Cryo-EM structure of the TnpB-omegaRNA-target DNA ternary complex
Descriptor: Non-target strand, RNA-guided DNA endonuclease TnpB, Target strand, ...
Authors:Nakagawa, R, Hirano, H, Omura, S, Nureki, O.
Deposit date:2022-10-03
Release date:2023-04-12
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Cryo-EM structure of the transposon-associated TnpB enzyme.
Nature, 616, 2023
4O66
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BU of 4o66 by Molmil
Crystal Structure of SMARCAL1 HARP substrate recognition domain
Descriptor: SODIUM ION, SULFATE ION, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1
Authors:Mason, A.C, Eichman, B.F.
Deposit date:2013-12-20
Release date:2014-05-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A structure-specific nucleic acid-binding domain conserved among DNA repair proteins.
Proc.Natl.Acad.Sci.USA, 111, 2014
7QVQ
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BU of 7qvq by Molmil
Human telomeric DNA G-quadruplex of a gold(III) complex containing the 2,4,6-tris (2-pyrimidyl)-1,3,5-triazine ligand
Descriptor: 2,4,6-tris (2-pyrimidyl)-1,3,5-triazine gold(III) complex, POTASSIUM ION, human telomeric DNA
Authors:Bazzicalupi, C, Ryde, U, Gratteri, P, Bergmann, J.
Deposit date:2022-01-23
Release date:2022-12-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Probing the Efficiency of 13-Pyridylalkyl Berberine Derivatives to Human Telomeric G-Quadruplexes Binding: Spectroscopic, Solid State and In Silico Analysis.
Int J Mol Sci, 23, 2022
7P0H
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BU of 7p0h by Molmil
Crystal structure of Helicobacter pylori ComF fused to an artificial alphaREP crystallization helper(named B2)
Descriptor: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, GLYCEROL, Helicobacter pylori ComF fused to an artificial alphaREP crystallization helper (named B2), ...
Authors:Celma, L, Walbott, H, Legrand, P, Quevillon-Cheruel, S.
Deposit date:2021-06-29
Release date:2022-04-06
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.499 Å)
Cite:ComFC mediates transport and handling of single-stranded DNA during natural transformation.
Nat Commun, 13, 2022
5HML
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BU of 5hml by Molmil
Crystal Structure of T5 D15 Protein Co-crystallized with Metal Ions
Descriptor: 1,2-ETHANEDIOL, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ...
Authors:Flemming, C.S, Feng, M, Sedelnikova, S.E, Zhang, J, Rafferty, J.B, Sayers, J.R, Artymiuk, P.J.
Deposit date:2016-01-16
Release date:2016-06-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.482 Å)
Cite:Direct observation of DNA threading in flap endonuclease complexes.
Nat.Struct.Mol.Biol., 23, 2016
5HMM
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BU of 5hmm by Molmil
Crystal Structure of T5 D15 Protein Co-crystallized with Metal Ions
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Exodeoxyribonuclease, ...
Authors:Flemming, C.S, Sedelnikova, S.E, Rafferty, J.B, Sayers, J.R, Artymiuk, P.J.
Deposit date:2016-01-16
Release date:2016-06-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Direct observation of DNA threading in flap endonuclease complexes.
Nat.Struct.Mol.Biol., 23, 2016
2F52
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BU of 2f52 by Molmil
Solution structure of cold shock protein CspB from Bacillus subtilis in complex with heptathymidine
Descriptor: Cold shock protein cspB
Authors:Zeeb, M, Sticht, H, Balbach, J.
Deposit date:2005-11-25
Release date:2006-09-19
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Recognition of T-rich single-stranded DNA by the cold shock protein Bs-CspB in solution.
Nucleic Acids Res., 34, 2006
2GAJ
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BU of 2gaj by Molmil
Structure of Full Length Topoisomerase I from Thermotoga maritima in monoclinic crystal form
Descriptor: DNA topoisomerase I
Authors:Hansen, G.
Deposit date:2006-03-09
Release date:2006-04-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structure of Full Length Topoisomerase I from Thermotoga maritima
J.Mol.Biol., 358, 2006
6A46
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BU of 6a46 by Molmil
Structure of TREX2 in complex with a nucleotide (dCMP)
Descriptor: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE, CALCIUM ION, MAGNESIUM ION, ...
Authors:Hsiao, Y.Y.
Deposit date:2018-06-19
Release date:2018-11-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insights into the duplex DNA processing of TREX2
Nucleic Acids Res., 46, 2018
5TXO
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BU of 5txo by Molmil
STRUCTURE OF Q151M complex (A62V, V75I, F77L, F116Y, Q151M) mutant HIV-1 REVERSE TRANSCRIPTASE (RT) TERNARY COMPLEX WITH A DOUBLE STRANDED DNA AND AN INCOMING DATP
Descriptor: 1,2-ETHANEDIOL, 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*G)-3'), ...
Authors:Das, K, Martinez, S.M, Arnold, E.
Deposit date:2016-11-17
Release date:2017-04-05
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.546 Å)
Cite:Structural Insights into HIV Reverse Transcriptase Mutations Q151M and Q151M Complex That Confer Multinucleoside Drug Resistance.
Antimicrob. Agents Chemother., 61, 2017

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