PDB: 19260 resultsInfo pagesStatus searchChemie searchBIRD

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8OO6	Pol I bound to extended and displaced DNA section - closed conformation Descriptor: DNA polymerase I, Displaced primer, Extending Primer, ... Authors: Botto, M, Borsellini, A, Lamers, M.H. Deposit date: 2023-04-04 Release date: 2023-08-09 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: A four-point molecular handover during Okazaki maturation. Nat.Struct.Mol.Biol., 30, 2023
8OOY	Pol I bound to extended and displaced DNA section - open conformation Descriptor: DNA polymerase I, Displacing Primer, Extending Primer, ... Authors: Botto, M, Borsellini, A, Lamers, M.H. Deposit date: 2023-04-06 Release date: 2023-08-09 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (4 Å) Cite: A four-point molecular handover during Okazaki maturation. Nat.Struct.Mol.Biol., 30, 2023
1O4X	TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT Descriptor: 5'-D(*CP*AP*TP*TP*AP*GP*CP*AP*TP*GP*AP*CP*AP*AP*AP*GP*AP*CP*A)-3', 5'-D(*TP*GP*TP*CP*TP*TP*TP*GP*TP*CP*AP*TP*GP*CP*TP*AP*AP*TP*G)-3', Transcription factor SOX-2, ... Authors: Clore, G.M, Williams, D.C. Deposit date: 2003-07-17 Release date: 2004-01-27 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Molecular basis for synergistic transcriptional activation by Oct1 and Sox2 revealed from the solution structure of the 42-kDa Oct1.Sox2.Hoxb1-DNA ternary transcription factor complex. J.Biol.Chem., 279, 2004
6ZYB	Sarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modification Descriptor: Sarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modification Authors: Ennifar, E. Deposit date: 2020-07-31 Release date: 2020-12-16 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (0.9 Å) Cite: 2'- O -Trifluoromethylated RNA - a powerful modification for RNA chemistry and NMR spectroscopy. Chem Sci, 11, 2020
1OAO	NiZn[Fe4S4] and NiNi[Fe4S4] clusters in closed and open alpha subunits of acetyl-CoA synthase/carbon monoxide dehydrogenase Descriptor: ACETATE ION, BICARBONATE ION, CARBON MONOXIDE DEHYDROGENASE/ACETYL-COA SYNTHASE SUBUNIT ALPHA, ... Authors: Darnault, C, Volbeda, A, Kim, E.J, Legrand, P, Vernede, X, Lindahl, P.A, Fontecilla-Camps, J.C. Deposit date: 2003-01-20 Release date: 2003-04-11 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Ni-Zn-[Fe4-S4] and Ni-Ni-[Fe4-S4] Clusters in Closed and Open Alpha Subunits of Acetyl-Coa Synthase/Carbon Monoxide Dehydrogenase Nat.Struct.Biol., 10, 2003
1NMZ	Crystal structure of human thymidylate kinase with NH2TMP and AppNHp Descriptor: 3'-DEOXY-3'-AMINOTHYMIDINE MONOPHOSPHATE, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... Authors: Ostermann, N, Segura-Pena, D, Meier, C, Veit, T, Monnerjahn, M, Konrad, M, Lavie, A. Deposit date: 2003-01-12 Release date: 2003-03-18 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structures of human thymidylate kinase in complex with prodrugs: implications for the structure-based design of novel compounds Biochemistry, 42, 2003
6ZNP	Crystal Structure of DUF1998 helicase MrfA bound to DNA Descriptor: CITRIC ACID, Uncharacterized ATP-dependent helicase YprA, ZINC ION, ... Authors: Roske, J.J, Liu, S, Loll, B, Neu, U, Wahl, M.C. Deposit date: 2020-07-06 Release date: 2020-11-25 Last modified: 2021-01-20 Method: X-RAY DIFFRACTION (3.16 Å) Cite: A skipping rope translocation mechanism in a widespread family of DNA repair helicases. Nucleic Acids Res., 49, 2021
6ZNQ	Crystal Structure of DUF1998 helicase MrfA bound to DNA and AMPPNP Descriptor: CITRIC ACID, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Uncharacterized ATP-dependent helicase YprA, ... Authors: Roske, J.J, Liu, S, Loll, B, Neu, U, Wahl, M.C. Deposit date: 2020-07-06 Release date: 2020-11-25 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (3.34 Å) Cite: A skipping rope translocation mechanism in a widespread family of DNA repair helicases. Nucleic Acids Res., 49, 2021
8OIS	28S human mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA Descriptor: 12S rRNA, 28S ribosomal protein S10, mitochondrial, ... Authors: Saurer, M, Leibundgut, M, Scaiola, A, Schoenhut, T, Ban, N. Deposit date: 2023-03-23 Release date: 2023-06-14 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (3 Å) Cite: Molecular basis of translation termination at noncanonical stop codons in human mitochondria. Science, 380, 2023
8OIR	55S human mitochondrial ribosome with mtRF1 and P-site tRNA Descriptor: 12S rRNA, 16S rRNA, 28S ribosomal protein S10, ... Authors: Saurer, M, Leibundgut, M, Scaiola, A, Schoenhut, T, Ban, N. Deposit date: 2023-03-23 Release date: 2023-06-14 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Molecular basis of translation termination at noncanonical stop codons in human mitochondria. Science, 380, 2023
8OIT	39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA Descriptor: 16S rRNA, 39S ribosomal protein L1, mitochondrial, ... Authors: Saurer, M, Leibundgut, M, Scaiola, A, Schoenhut, T, Ban, N. Deposit date: 2023-03-23 Release date: 2023-06-14 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Molecular basis of translation termination at noncanonical stop codons in human mitochondria. Science, 380, 2023
1NMX	Crystal structure of human thymidylate kinase with FLTMP and ADP Descriptor: 3'-FLUORO-3'-DEOXYTHYMIDINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... Authors: Ostermann, N, Segura-Pena, D, Meier, C, Veit, T, Monnerjahn, M, Konrad, M, Lavie, A. Deposit date: 2003-01-12 Release date: 2003-03-18 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structures of human thymidylate kinase in complex with prodrugs: implications for the structure-based design of novel compounds Biochemistry, 42, 2003
1NN1	Crystal structure of human thymidylate kinase with ddTMP and AppNHp Descriptor: 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... Authors: Ostermann, N, Segura-Pena, D, Meier, C, Veit, T, Monnerjahn, M, Konrad, M, Lavie, A. Deposit date: 2003-01-12 Release date: 2003-03-18 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structures of human thymidylate kinase in complex with prodrugs: implications for the structure-based design of novel compounds Biochemistry, 42, 2003
1NN3	Crystal structure of human thymidylate kinase with d4TMP + ADP Descriptor: 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... Authors: Ostermann, N, Segura-Pena, D, Meier, C, Veit, T, Monnerjahn, M, Konrad, M, Lavie, A. Deposit date: 2003-01-12 Release date: 2003-03-18 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Structures of human thymidylate kinase in complex with prodrugs: implications for the structure-based design of novel compounds Biochemistry, 42, 2003
1KZ2	Solution structure of the third helix of Antennapedia homeodomain derivative [W6F,W14F] Descriptor: Antennapedia protein Authors: Czajlik, A, Mesko, E, Penke, B, Perczel, A. Deposit date: 2002-02-06 Release date: 2002-02-20 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Investigation of penetratin peptides. Part 1. The environment dependent conformational properties of penetratin and two of its derivatives. J.Pept.Sci., 8, 2002
1LE1	NMR Structure of Tryptophan Zipper 2: A stable, Monomeric Beta-Hairpin with a Type I' Turn Descriptor: Tryptophan Zipper 2 Authors: Cochran, A.G, Skelton, N.J, Starovasnik, M.A. Deposit date: 2002-04-09 Release date: 2002-04-24 Last modified: 2022-02-23 Method: SOLUTION NMR Cite: Tryptophan zippers: stable, monomeric beta -hairpins. Proc.Natl.Acad.Sci.USA, 98, 2001
7EK4	prawn ferritin to coordinate with heavy metal ions Descriptor: FE (III) ION, Ferritin, MERCURY (II) ION Authors: Wang, Y, Zang, J. Deposit date: 2021-04-03 Release date: 2021-12-29 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural Insights for the Stronger Ability of Shrimp Ferritin to Coordinate with Heavy Metal Ions as Compared to Human H-Chain Ferritin. Int J Mol Sci, 22, 2021
7EK7	prawn ferritin to coordinate with heavy metal ions Descriptor: Ferritin, MERCURY (II) ION Authors: Wang, Y, Zang, J. Deposit date: 2021-04-04 Release date: 2021-12-29 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural Insights for the Stronger Ability of Shrimp Ferritin to Coordinate with Heavy Metal Ions as Compared to Human H-Chain Ferritin. Int J Mol Sci, 22, 2021
7EK5	prawn ferritin to coordinate with heavy metal ions Descriptor: CADMIUM ION, FE (III) ION, Ferritin Authors: Wang, Y, Zang, J. Deposit date: 2021-04-03 Release date: 2021-12-29 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural Insights for the Stronger Ability of Shrimp Ferritin to Coordinate with Heavy Metal Ions as Compared to Human H-Chain Ferritin. Int J Mol Sci, 22, 2021
8J7R	Cryo-EM structure of the J-K-St region of EMCV IRES in complex with eIF4G-HEAT1 and eIF4A (J-K-St/eIF4G focused) Descriptor: Eukaryotic translation initiation factor 4 gamma 1, IRES RNA (J-K-St), MAGNESIUM ION Authors: Suzuki, H, Fujiyoshi, Y, Imai, S, Shimada, I. Deposit date: 2023-04-28 Release date: 2023-08-02 Last modified: 2023-09-13 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Dynamically regulated two-site interaction of viral RNA to capture host translation initiation factor. Nat Commun, 14, 2023
8J07	96nm repeat of human respiratory doublet microtubule and associated axonemal complexes Descriptor: ACTA2, Axonemal dynein light intermediate polypeptide 1, Calaxin, ... Authors: Gui, M, Brown, A. Deposit date: 2023-04-09 Release date: 2023-07-26 Last modified: 2023-08-02 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Axonemal structures reveal mechanoregulatory and disease mechanisms. Nature, 618, 2023
1KZ0	Solution structure of the third helix of Antennapedia homeodomain Descriptor: Antennapedia protein Authors: Czajlik, A, Mesko, E, Penke, B, Perczel, A. Deposit date: 2002-02-06 Release date: 2002-02-20 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Investigation of penetratin peptides. Part 1. The environment dependent conformational properties of penetratin and two of its derivatives. J.Pept.Sci., 8, 2002
1NMY	Crystal structure of human thymidylate kinase with FLTMP and AppNHp Descriptor: 3'-FLUORO-3'-DEOXYTHYMIDINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... Authors: Ostermann, N, Segura-Pena, D, Meier, C, Veit, T, Monnerjahn, M, Konrad, M, Lavie, A. Deposit date: 2003-01-12 Release date: 2003-03-18 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structures of human thymidylate kinase in complex with prodrugs: implications for the structure-based design of novel compounds Biochemistry, 42, 2003
8JIL	Cryo-EM structure of niacin bound ketone body receptor HCAR2-Gi signaling complex Descriptor: CHOLESTEROL, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ... Authors: Zhao, C, Tian, X.W, Liu, Y, Cheng, L, Yan, W, Shao, Z.H. Deposit date: 2023-05-26 Release date: 2023-09-06 Last modified: 2023-09-27 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Biased allosteric activation of ketone body receptor HCAR2 suppresses inflammation. Mol.Cell, 83, 2023
8IXB	GMPCPP-Alpha1A/Beta2A-microtubule decorated with kinesin seam region Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, Kinesin-1 heavy chain, ... Authors: Zheng, W, Zhao, Q.Y, Diao, L, Bao, L, Cong, Y. Deposit date: 2023-03-31 Release date: 2023-08-16 Last modified: 2023-10-25 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Cryo-EM of alpha-tubulin isotype-containing microtubules revealed a contracted structure of alpha 4A/ beta 2A microtubules. Acta Biochim.Biophys.Sin., 55, 2023

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