PDB: 46984 resultsInfo pagesStatus searchChemie searchBIRD

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8UIS	Structure of transcription complex Pol II-DSIF-NELF-TFIIS Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB3, DNA-directed RNA polymerase II subunit RPB7, ... Authors: Su, B.G, Vos, S.M. Deposit date: 2023-10-10 Release date: 2024-03-20 Last modified: 2024-04-17 Method: ELECTRON MICROSCOPY (3.23 Å) Cite: Distinct negative elongation factor conformations regulate RNA polymerase II promoter-proximal pausing. Mol.Cell, 84, 2024
7NHL	VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Crowe-McAuliffe, C, Murina, V, Hauryliuk, V, Wilson, D.N. Deposit date: 2021-02-10 Release date: 2021-05-05 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural basis of ABCF-mediated resistance to pleuromutilin, lincosamide, and streptogramin A antibiotics in Gram-positive pathogens. Nat Commun, 12, 2021
6AQY	Crystal structure of a gdp-l-fucose synthetase from Naegleria fowleri Descriptor: CHLORIDE ION, SULFATE ION, gdp-l-fucose synthetase Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2017-08-21 Release date: 2017-08-30 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Crystal structure of a gdp-l-fucose synthetase from Naegleria fowleri To Be Published
5ZEB	M. Smegmatis P/P state 70S ribosome structure Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Mishra, S, Ahmed, T, Tyagi, A, Shi, J, Bhushan, S. Deposit date: 2018-02-27 Release date: 2018-09-26 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structures of Mycobacterium smegmatis 70S ribosomes in complex with HPF, tmRNA, and P-tRNA. Sci Rep, 8, 2018
8U3N	Structure of P450Blt from Micromonospora sp. MW-13 Descriptor: Cytochrome P450-SU1, POTASSIUM ION, PROTOPORPHYRIN IX CONTAINING FE, ... Authors: Hansen, M.H, Cryle, M.J, Zhao, Y. Deposit date: 2023-09-08 Release date: 2024-01-10 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Structural Insights into a Side Chain Cross-Linking Biarylitide P450 from RiPP Biosynthesis Acs Catalysis, 2024
8U2M	Structure of P450Blt from Micromonospora sp. MW-13 in Complex with Biarylitide Descriptor: 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL, ACETATE ION, Cytochrome P450-SU1, ... Authors: Hansen, M.H, Cryle, M.J. Deposit date: 2023-09-06 Release date: 2024-01-10 Method: X-RAY DIFFRACTION (1.79 Å) Cite: Structural Insights into a Side Chain Cross-Linking Biarylitide P450 from RiPP Biosynthesis Acs Catalysis, 2024
8TVP	Cryo-EM structure of CPD-stalled Pol II in complex with Rad26 (open state) Descriptor: DNA (NTS), DNA (TS), DNA repair and recombination protein RAD26, ... Authors: Sarsam, R.D, Lahiri, I, Leschziner, A.E. Deposit date: 2023-08-18 Release date: 2024-01-24 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proc.Natl.Acad.Sci.USA, 121, 2024
8TVY	Cryo-EM structure of CPD lesion containing RNA Polymerase II elongation complex with Rad26 and Elf1 (closed state) Descriptor: DNA (NTS), DNA (TS), DNA-directed RNA polymerase II subunit RPB1, ... Authors: Sarsam, R.D, Lahiri, I, Leschziner, A.E. Deposit date: 2023-08-18 Release date: 2024-01-24 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proc.Natl.Acad.Sci.USA, 121, 2024
8TVX	Cryo-EM structure of CPD-stalled Pol II (Conformation 2) Descriptor: DNA (NTS), DNA (TS), DNA-directed RNA polymerase II subunit RPB1, ... Authors: Sarsam, R.D, Lahiri, I, Leschziner, A.E. Deposit date: 2023-08-18 Release date: 2024-01-24 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proc.Natl.Acad.Sci.USA, 121, 2024
8TVW	Cryo-EM structure of CPD-stalled Pol II (conformation 1) Descriptor: DNA (NTS), DNA (TS), DNA-directed RNA polymerase II subunit RPB1, ... Authors: Sarsam, R.D, Lahiri, I, Leschziner, A.E. Deposit date: 2023-08-18 Release date: 2024-01-24 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proc.Natl.Acad.Sci.USA, 121, 2024
8TUG	Cryo-EM structure of CPD-stalled Pol II in complex with Rad26 (engaged state) Descriptor: DNA (NTS), DNA (TS), DNA repair and recombination protein RAD26, ... Authors: Sarsam, R.D, Lahiri, I, Leschziner, A.E. Deposit date: 2023-08-16 Release date: 2024-01-24 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair. Proc.Natl.Acad.Sci.USA, 121, 2024
5ZEP	M. smegmatis hibernating state 70S ribosome structure Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Mishra, S, Ahmed, T, Tyagi, A, Shi, J, Bhushan, S. Deposit date: 2018-02-27 Release date: 2018-09-26 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structures of Mycobacterium smegmatis 70S ribosomes in complex with HPF, tmRNA, and P-tRNA. Sci Rep, 8, 2018
2ORE	Binary Structure of Escherichia coli DNA Adenine Methyltransferase and S-adenosylhomocysteine Descriptor: DNA adenine methylase, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION Authors: Horton, J.R, Cheng, X. Deposit date: 2007-02-02 Release date: 2007-06-26 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.99 Å) Cite: Two Alternative Conformations of S-Adenosyl-L-homocysteine Bound to Escherichia coli DNA Adenine Methyltransferase and the Implication of Conformational Changes in Regulating the Catalytic Cycle. J.Biol.Chem., 282, 2007
8WID	Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH. Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Kumar, N, Sharma, S, Kaushal, P.S. Deposit date: 2023-09-24 Release date: 2024-02-28 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Cryo- EM structure of the mycobacterial 70S ribosome in complex with ribosome hibernation promotion factor RafH. Nat Commun, 15, 2024
8WIF	Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome and RafH. Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Kumar, N, Sharma, S, Kaushal, P.S. Deposit date: 2023-09-24 Release date: 2024-02-28 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Cryo- EM structure of the mycobacterial 70S ribosome in complex with ribosome hibernation promotion factor RafH. Nat Commun, 15, 2024
8WHX	Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH. Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Kumar, N, Sharma, S, Kaushal, P.S. Deposit date: 2023-09-23 Release date: 2024-02-28 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Cryo- EM structure of the mycobacterial 70S ribosome in complex with ribosome hibernation promotion factor RafH. Nat Commun, 15, 2024
7MPI	Stm1 bound vacant 80S structure isolated from cbf5-D95A Descriptor: 18S rRNA, 25S rRNA, 40S ribosomal protein S0-A, ... Authors: Rai, J, Zhao, Y, Li, H. Deposit date: 2021-05-04 Release date: 2022-05-11 Last modified: 2022-07-20 Method: ELECTRON MICROSCOPY (3.05 Å) Cite: CryoEM structures of pseudouridine-free ribosome suggest impacts of chemical modifications on ribosome conformations. Structure, 30, 2022
7NAX	Complete Bacterial 30S ribosomal subunit assembly complex state I (Consensus Refinement) Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Schedlbauer, A, Iturrioz, I, Ochoa-Lizarralde, B, Diercks, T, Lopez-Alonso, J, Kaminishi, T, Capuni, R, Astigarraga, E, Gil-Carton, D, Fucini, P, Connell, S. Deposit date: 2021-01-25 Release date: 2021-12-08 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.96 Å) Cite: A conserved rRNA switch is central to decoding site maturation on the small ribosomal subunit. Sci Adv, 7, 2021
7L9H	Crystal structure of human ARH3-D77A bound to magnesium and ADP-ribose Descriptor: ADP-ribose glycohydrolase ARH3, MAGNESIUM ION, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE Authors: Pourfarjam, Y, Kurinov, I, Moss, J, Kim, I.K. Deposit date: 2021-01-04 Release date: 2021-04-28 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structural and biochemical analysis of human ADP-ribosyl-acceptor hydrolase 3 reveals the basis of metal selectivity and different roles for the two magnesium ions. J.Biol.Chem., 296, 2021
7NBU	Structure of the HigB1 toxin mutant K95A from Mycobacterium tuberculosis (Rv1955) and its target, the cspA mRNA, on the E. coli Ribosome. Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Giudice, E, Mansour, M, Chat, S, D'Urso, G, Gillet, R, Genevaux, P. Deposit date: 2021-01-27 Release date: 2022-03-02 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (3.11 Å) Cite: Substrate recognition and cryo-EM structure of the ribosome-bound TAC toxin of Mycobacterium tuberculosis. Nat Commun, 13, 2022
7N8B	Cycloheximide bound vacant 80S structure isolated from cbf5-D95A Descriptor: 18S RIBOSOMAL RNA, 25S, 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione, ... Authors: Rai, J, Zhao, Y, Li, H. Deposit date: 2021-06-14 Release date: 2022-05-11 Last modified: 2022-07-20 Method: ELECTRON MICROSCOPY (3.05 Å) Cite: CryoEM structures of pseudouridine-free ribosome suggest impacts of chemical modifications on ribosome conformations. Structure, 30, 2022
7NAD	State E2 nucleolar 60S ribosomal biogenesis intermediate - Spb4 local refinement model Descriptor: 25S rRNA, 5.8S rRNA, 60S ribosomal protein L17-A, ... Authors: Cruz, V.E, Sekulski, K, Peddada, N, Erzberger, J.P. Deposit date: 2021-06-21 Release date: 2022-11-09 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.04 Å) Cite: Sequence-specific remodeling of a topologically complex RNP substrate by Spb4. Nat.Struct.Mol.Biol., 29, 2022
6BK8	S. cerevisiae spliceosomal post-catalytic P complex Descriptor: GUANOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, Lea1, ... Authors: Liu, S, Li, X, Zhou, Z.H, Zhao, R. Deposit date: 2017-11-07 Release date: 2018-02-21 Last modified: 2020-10-14 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structure of the yeast spliceosomal postcatalytic P complex. Science, 358, 2017
2AK4	Crystal Structure of SB27 TCR in complex with HLA-B*3508-13mer peptide Descriptor: Beta-2-microglobulin, EBV peptide LPEPLPQGQLTAY, HLA-B35 variant, ... Authors: Tynan, F.E, Burrows, S.R, Buckle, A.M, Clements, C.S, Borg, N.A, Miles, J.J, Beddoe, T, Whisstock, J.C, Wilce, M.C, Silins, S.L, Burrows, J.M, Kjer-Nielsen, L, Konstenko, L, Purcell, A.W, McCluskey, J, Rossjohn, J. Deposit date: 2005-08-03 Release date: 2005-10-11 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: T cell receptor recognition of a 'super-bulged' major histocompatibility complex class I-bound peptide Nat.Immunol., 6, 2005
2EQP	Solution structure of the stn_TNFRSF12A_TNFR domain of Tumor necrosis factor receptor superfamily member 12A precursor Descriptor: Tumor necrosis factor receptor superfamily member 12A Authors: Dang, W, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-03-30 Release date: 2008-04-01 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the stn_TNFRSF12A_TNFR domain of Tumor necrosis factor receptor superfamily member 12A precursor To be Published

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