PDB: 27116 resultsInfo pagesStatus searchChemie searchBIRD

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5FS6	Crystal structure of the V243L mutant of human apoptosis inducing factor Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, APOPTOSIS-INDUCING FACTOR 1, MITOCHONDRIAL, ... Authors: Sevrioukova, I. Deposit date: 2015-12-30 Release date: 2016-05-11 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure/Function Relations in Aifm1 Variants Associated with Neurodegenerative Disorders J.Mol.Biol., 428, 2016
3LRB	Structure of E. coli AdiC Descriptor: Arginine/agmatine antiporter Authors: Gao, X, Lu, F, Zhou, L, Shi, Y. Deposit date: 2010-02-10 Release date: 2010-02-23 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (3.61 Å) Cite: Structure and mechanism of an amino acid antiporter Science, 324, 2009
5J61	D-aminoacyl-tRNA deacylase (DTD) from Plasmodium falciparum in complex with glycyl-3'-aminoadenosine at 2.10 Angstrom resolution Descriptor: 3'-deoxy-3'-(glycylamino)adenosine, D-tyrosyl-tRNA(Tyr) deacylase Authors: Routh, S.B, Ahmad, S, Sankaranarayanan, R. Deposit date: 2016-04-04 Release date: 2016-09-21 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Elongation Factor Tu Prevents Misediting of Gly-tRNA(Gly) Caused by the Design Behind the Chiral Proofreading Site of D-Aminoacyl-tRNA Deacylase Plos Biol., 14, 2016
5MDY	Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: James, N.R, Brown, A, Gordiyenko, Y, Ramakrishnan, V. Deposit date: 2016-11-13 Release date: 2016-12-21 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (3.35 Å) Cite: Translational termination without a stop codon. Science, 354, 2016
5MNI	Escherichia coli AGPase mutant R130A apo form Descriptor: Glucose-1-phosphate adenylyltransferase Authors: Cifuente, J.O, Comino, N, Marina, A, Orrantia, A, Eguskiza, A, Guerin, M.E. Deposit date: 2016-12-13 Release date: 2017-03-01 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (3.09 Å) Cite: Mechanistic insights into the allosteric regulation of bacterial ADP-glucose pyrophosphorylases. J. Biol. Chem., 292, 2017
7PJB	Crystal structure of YTHDC1 with compound PSI_DC1_004 Descriptor: (R)-homoproline, GLYCEROL, SULFATE ION, ... Authors: Bedi, R.K, Huang, D, Caflisch, A. Deposit date: 2021-08-23 Release date: 2021-10-20 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure-based design of ligands of the m6A-RNA reader YTHDC1 Eur J Med Chem Rep, 5, 2022
5FB9	S1 nuclease from Aspergillus oryzae with unoccupied active site Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Nuclease S1, ... Authors: Koval, T, Oestergaard, L.H, Dohnalek, J. Deposit date: 2015-12-14 Release date: 2016-12-28 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structural and Catalytic Properties of S1 Nuclease from Aspergillus oryzae Responsible for Substrate Recognition, Cleavage, Non-Specificity, and Inhibition. PLoS ONE, 11, 2016
7PIL	Cryo-EM structure of the Rhodobacter sphaeroides RC-LH1-PufXY monomer complex at 2.5 A Descriptor: (2R,5R,11R,14R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-2,14-bis(tetradecanoyloxy)-4,6,10,12,16-pentaoxa-5,11-diphosphatriacont-1-yl tetradecanoate, 1,2-Distearoyl-sn-glycerophosphoethanolamine, BACTERIOCHLOROPHYLL A, ... Authors: Qian, P, Hunter, C.N. Deposit date: 2021-08-20 Release date: 2021-10-13 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: Cryo-EM structure of the monomeric Rhodobacter sphaeroides RC-LH1 core complex at 2.5 angstrom. Biochem.J., 478, 2021
7PJ8	Crystal structure of YTHDC1 with compound DHU_DC1_225 Descriptor: N-methyl-1H-indole-4-carboxamide, SULFATE ION, YTH domain-containing protein 1 Authors: Bedi, R.K, Huang, D, Caflisch, A. Deposit date: 2021-08-23 Release date: 2021-10-20 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Structure-based design of ligands of the m6A-RNA reader YTHDC1 Eur J Med Chem Rep, 5, 2022
5MS1	Cowpea mosaic virus top component (CPMV-T) - naturally occurring empty particles Descriptor: Large subunit of Cowpea music virus, Small subunit of cowpea mosaic virus Authors: Hesketh, E.L, Meshcheriakova, Y, Thompson, R.F, Lomonossoff, G.P, Ranson, N.A. Deposit date: 2016-12-29 Release date: 2017-07-19 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (4.25 Å) Cite: The structures of a naturally empty cowpea mosaic virus particle and its genome-containing counterpart by cryo-electron microscopy. Sci Rep, 7, 2017
5B6W	A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 16 ns after photoexcitation Descriptor: 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, DECANE, ... Authors: Royant, A, Nango, E, Nakane, T, Tanaka, T, Arima, T, Neutze, R, Iwata, S. Deposit date: 2016-06-02 Release date: 2016-12-21 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.1 Å) Cite: A three-dimensional movie of structural changes in bacteriorhodopsin Science, 354, 2016
7PJY	Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 1 (CHI1-EF-G-GDP) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Petrychenko, V, Peng, B.Z, Schwarzer, A.C, Peske, F, Rodnina, M.V, Fischer, N. Deposit date: 2021-08-24 Release date: 2021-10-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural mechanism of GTPase-powered ribosome-tRNA movement. Nat Commun, 12, 2021
7PJP	Crystal structure of YTHDC1 with compound DHU_DC1_226 Descriptor: 5-(furan-2-yl)-N-methyl-1H-pyrazole-3-carboxamide, SULFATE ION, YTH domain-containing protein 1 Authors: Bedi, R.K, Huang, D, Caflisch, A. Deposit date: 2021-08-24 Release date: 2021-10-20 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.61 Å) Cite: Structure-based design of ligands of the m6A-RNA reader YTHDC1 Eur J Med Chem Rep, 5, 2022
7PJX	Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in hybrid state 1 (H1-EF-G-GDP) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Petrychenko, V, Peng, B.Z, Schwarzer, A.C, Peske, F, Rodnina, M.V, Fischer, N. Deposit date: 2021-08-24 Release date: 2021-10-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (6.5 Å) Cite: Structural mechanism of GTPase-powered ribosome-tRNA movement. Nat Commun, 12, 2021
4QTN	Crystal structure of the Vitamin B3 transporter PnuC Descriptor: Nicotinamide riboside, Nicotinamide riboside transporter PnuC, octyl beta-D-glucopyranoside Authors: Guskov, A, Jaehme, M, Slotboom, D.J. Deposit date: 2014-07-08 Release date: 2014-10-08 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structure of the Vitamin B3 transporter PnuC Nat.Struct.Mol.Biol., 2014
5B6Z	A three dimensional movie of structural changes in bacteriorhodopsin: structure obtained 1.725 ms us after photoexcitation Descriptor: 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, DECANE, ... Authors: Royant, A, Nango, E, Nakane, T, Tanaka, T, Arima, T, Neutze, R, Iwata, S. Deposit date: 2016-06-02 Release date: 2016-12-21 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.1 Å) Cite: A three-dimensional movie of structural changes in bacteriorhodopsin Science, 354, 2016
5MSH	Cowpea mosaic virus top component (CPMV-T) - naturally occurring empty particles Descriptor: Cowpea mosaic virus large subunit, Cowpea mosaic virus small subunit Authors: Hesketh, E.L, Meshcheriakova, Y, Thompson, R.F, Lomonossoff, G.P, Ranson, N.A. Deposit date: 2017-01-04 Release date: 2017-07-19 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (4.25 Å) Cite: The structures of a naturally empty cowpea mosaic virus particle and its genome-containing counterpart by cryo-electron microscopy. Sci Rep, 7, 2017
7PJ9	Crystal structure of YTHDC1 with compound DHU_DC1_232 Descriptor: 5-bromanyl-N-methyl-1H-indazole-3-carboxamide, SULFATE ION, YTH domain-containing protein 1 Authors: Bedi, R.K, Huang, D, Caflisch, A. Deposit date: 2021-08-23 Release date: 2021-10-20 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.72 Å) Cite: Structure-based design of ligands of the m6A-RNA reader YTHDC1 Eur J Med Chem Rep, 5, 2022
7PN1	Apo HsPepT1 in the outward facing open conformation Descriptor: Solute carrier family 15 member 1 Authors: Killer, M, Wald, J, Pieprzyk, J, Marlovits, T.C, Loew, C. Deposit date: 2021-09-04 Release date: 2021-10-20 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Structural snapshots of human PepT1 and PepT2 reveal mechanistic insights into substrate and drug transport across epithelial membranes. Sci Adv, 7, 2021
4RDN	Structure of YTH-YTHDF2 in complex with m6A Descriptor: N-methyladenosine, SULFATE ION, YTH domain-containing family protein 2 Authors: Li, F.D, Zhao, D.B, Wu, J.H, Shi, Y.Y. Deposit date: 2014-09-19 Release date: 2014-12-24 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structure of the YTH domain of human YTHDF2 in complex with an m(6)A mononucleotide reveals an aromatic cage for m(6)A recognition. Cell Res., 24, 2014
7PJZ	Structure of the 70S-EF-G-GDP ribosome complex with tRNAs in chimeric state 2 (CHI2-EF-G-GDP) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Petrychenko, V, Peng, B.Z, Schwarzer, A.C, Peske, F, Rodnina, M.V, Fischer, N. Deposit date: 2021-08-24 Release date: 2021-10-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (6 Å) Cite: Structural mechanism of GTPase-powered ribosome-tRNA movement. Nat Commun, 12, 2021
7PJW	Structure of the 70S-EF-G-GDP-Pi ribosome complex with tRNAs in hybrid state 2 (H2-EF-G-GDP-Pi) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Petrychenko, V, Peng, B.Z, Schwarzer, A.C, Peske, F, Rodnina, M.V, Fischer, N. Deposit date: 2021-08-24 Release date: 2021-10-20 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (4 Å) Cite: Structural mechanism of GTPase-powered ribosome-tRNA movement. Nat Commun, 12, 2021
7K20	Cryo-EM structure of pyrene-labeled ADP-actin filaments Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, alpha skeletal muscle, ... Authors: Chou, S.Z, Pollard, T.D. Deposit date: 2020-09-08 Release date: 2020-11-04 Last modified: 2020-12-02 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Cryo-electron microscopy structures of pyrene-labeled ADP-P i - and ADP-actin filaments. Nat Commun, 11, 2020
3L7M	Structure of the Wall Teichoic Acid Polymerase TagF, H548A Descriptor: CHLORIDE ION, PHOSPHATE ION, Teichoic acid biosynthesis protein F, ... Authors: Lovering, A.L, Strynadka, N.C.J. Deposit date: 2009-12-28 Release date: 2010-04-28 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Structure of the bacterial teichoic acid polymerase TagF provides insights into membrane association and catalysis. Nat.Struct.Mol.Biol., 17, 2010
5BJ4	THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE TETRA MUTANT 2 Descriptor: PHOSPHATE ION, PROTEIN (ASPARTATE AMINOTRANSFERASE), PYRIDOXAL-5'-PHOSPHATE Authors: Ura, H, Nakai, T, Kawaguchi, S.I, Miyahara, I, Hirotsu, K, Kuramitsu, S. Deposit date: 1999-01-11 Release date: 2003-09-02 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2 Å) Cite: Substrate recognition mechanism of thermophilic dual-substrate enzyme J.BIOCHEM.(TOKYO), 130, 2001

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