PDB: 47720 resultsInfo pagesStatus searchChemie searchBIRD

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1U6Z	Structure of an E. coli Exopolyphosphatase: Insight into the processive hydrolysis of polyphosphate and its regulation Descriptor: Exopolyphosphatase, SULFATE ION Authors: Hasson, M.S, Alvarado, J, Sanders, D.A. Deposit date: 2004-08-02 Release date: 2005-12-06 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Origin of exopolyphosphatase processivity: Fusion of an ASKHA phosphotransferase and a cyclic nucleotide phosphodiesterase homolog. Structure, 14, 2006
7Z31	Structure of yeast RNA Polymerase III-Ty1 integrase complex at 2.7 A (focus subunit C11, no C11 C-terminal Zn-ribbon in the funnel pore). Descriptor: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ... Authors: Nguyen, P.Q, Huecas, S, Plaza-Pegueroles, A, Fernandez-Tornero, C. Deposit date: 2022-03-01 Release date: 2023-04-05 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (2.76 Å) Cite: Structural basis of Ty1 integrase tethering to RNA polymerase III for targeted retrotransposon integration. Nat Commun, 14, 2023
7Z30	Structure of yeast RNA Polymerase III-Ty1 integrase complex at 2.9 A (focus subunit C11 terminal Zn-ribbon in the funnel pore). Descriptor: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ... Authors: Nguyen, P.Q, Fernandez-Tornero, C. Deposit date: 2022-03-01 Release date: 2023-04-05 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Structural basis of Ty1 integrase tethering to RNA polymerase III for targeted retrotransposon integration. Nat Commun, 14, 2023
8CBJ	Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex Descriptor: 20S pre-ribosomal RNA, 20S-pre-rRNA D-site endonuclease NOB1, 40S ribosomal protein S0-A, ... Authors: Ikeuchi, K, Buschauer, R, Cheng, J, Berninghausen, O, Becker, T, Beckmann, R. Deposit date: 2023-01-25 Release date: 2023-05-24 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Molecular basis for recognition and deubiquitination of 40S ribosomes by Otu2. Nat Commun, 14, 2023
8CAS	Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial) Descriptor: 18S ribosomal RNA, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, ... Authors: Ikeuchi, K, Buschauer, R, Cheng, J, Berninghausen, O, Becker, T, Beckmann, R. Deposit date: 2023-01-24 Release date: 2023-05-24 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Molecular basis for recognition and deubiquitination of 40S ribosomes by Otu2. Nat Commun, 14, 2023
8PK0	human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7 Descriptor: 16S rRNA + pre-H68-71 segment, 39S ribosomal protein L10, mitochondrial, ... Authors: Kummer, E, Nguyen, T.G, Ritter, C. Deposit date: 2023-06-23 Release date: 2023-12-13 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (3.03 Å) Cite: Structural insights into the role of GTPBP10 in the RNA maturation of the mitoribosome. Nat Commun, 14, 2023
8QSJ	Human mitoribosomal large subunit assembly intermediate 2 with GTPBP7 Descriptor: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ... Authors: Ritter, C, Nguyen, T.G, Kummer, E. Deposit date: 2023-10-10 Release date: 2023-12-13 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural insights into the role of GTPBP10 in the RNA maturation of the mitoribosome. Nat Commun, 14, 2023
8SSE	Methionine synthase, C-terminal fragment, Cobalamin and Reactivation Domains from Thermus thermophilus HB8 Descriptor: COBALAMIN, Methionine synthase Authors: Yamada, K, Mendoza, J, Koutmos, M. Deposit date: 2023-05-08 Release date: 2023-10-11 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (3.15 Å) Cite: Structure of full-length cobalamin-dependent methionine synthase and cofactor loading captured in crystallo. Nat Commun, 14, 2023
6C50	Cross-alpha Amyloid-like Structure alphaAmS Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Cross-alpha Amyloid-like Structure alphaAmS, FORMIC ACID Authors: Liu, L, Zhang, S.Q. Deposit date: 2018-01-13 Release date: 2018-08-15 Last modified: 2019-12-18 Method: X-RAY DIFFRACTION (2.503 Å) Cite: Designed peptides that assemble into cross-alpha amyloid-like structures. Nat. Chem. Biol., 14, 2018
3CME	The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui Descriptor: 50S RIBOSOMAL RNA, 50S ribosomal protein L10E, 50S ribosomal protein L10e, ... Authors: Simonovic, M, Steitz, T.A. Deposit date: 2008-03-21 Release date: 2008-09-23 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Peptidyl-CCA deacylation on the ribosome promoted by induced fit and the O3'-hydroxyl group of A76 of the unacylated A-site tRNA. Rna, 14, 2008
3BBI	Minimally Junctioned Hairpin Ribozyme Incorporating A38(2AP) and A-1 2'-O-Me Modifications near Active Site Descriptor: COBALT HEXAMMINE(III), Loop A Substrate strand, Loop A and Loop B Ribozyme strand, ... Authors: MacElrevey, C, Krucinska, J, Wedekind, J.E. Deposit date: 2007-11-09 Release date: 2008-08-12 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Structural effects of nucleobase variations at key active site residue Ade38 in the hairpin ribozyme. Rna, 14, 2008
8G2Z	48-nm doublet microtubule from Tetrahymena thermophila strain CU428 Descriptor: B2B3_fMIP, B5B6_fMIP, CFAM166A, ... Authors: Black, C.S, Kubo, S, Yang, S.K, Bui, K.H. Deposit date: 2023-02-06 Release date: 2023-06-14 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Native doublet microtubules from Tetrahymena thermophila reveal the importance of outer junction proteins. Nat Commun, 14, 2023
8G3D	48-nm doublet microtubule from Tetrahymena thermophila strain K40R Descriptor: B2B3_fMIP, B5B6_fMIP, CFAM166A, ... Authors: Black, C.S, Kubo, S, Yang, S.K, Bui, K.H. Deposit date: 2023-02-07 Release date: 2023-06-14 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Native doublet microtubules from Tetrahymena thermophila reveal the importance of outer junction proteins. Nat Commun, 14, 2023
3CMA	The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui Descriptor: 23S RIBOSOMAL RNA, 50S ribosomal protein L10E, 50S ribosomal protein L10e, ... Authors: Simonovic, M, Steitz, T.A. Deposit date: 2008-03-21 Release date: 2008-09-23 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Peptidyl-CCA deacylation on the ribosome promoted by induced fit and the O3'-hydroxyl group of A76 of the unacylated A-site tRNA. Rna, 14, 2008
8G6F	Structure of the Plasmodium falciparum 20S proteasome beta-6 A117D mutant complexed with inhibitor WLW-vs Descriptor: (2S)-N-[(E,2S)-1-(1H-indol-3-yl)-4-methylsulfonyl-but-3-en-2-yl]-2-[[(2S)-3-(1H-indol-3-yl)-2-(2-morpholin-4-ylethanoylamino)propanoyl]amino]-4-methyl-pentanamide, Proteasome endopeptidase complex, Proteasome subunit alpha type-1, ... Authors: Hsu, H.-C, Li, H. Deposit date: 2023-02-15 Release date: 2023-12-20 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (2.58 Å) Cite: Structures revealing mechanisms of resistance and collateral sensitivity of Plasmodium falciparum to proteasome inhibitors. Nat Commun, 14, 2023
8G6E	Structure of the Plasmodium falciparum 20S proteasome complexed with inhibitor TDI-8304 Descriptor: (7S,10S,13S)-N-cyclopentyl-10-[2-(morpholin-4-yl)ethyl]-9,12-dioxo-13-(2-oxopyrrolidin-1-yl)-2-oxa-8,11-diazabicyclo[13.3.1]nonadeca-1(19),15,17-triene-7-carboxamide, Proteasome subunit alpha type, Proteasome subunit alpha type-1, ... Authors: Hsu, H.-C, Li, H. Deposit date: 2023-02-15 Release date: 2023-12-20 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (2.18 Å) Cite: Structures revealing mechanisms of resistance and collateral sensitivity of Plasmodium falciparum to proteasome inhibitors. Nat Commun, 14, 2023
8GYM	Cryo-EM structure of Tetrahymena thermophila respiratory mega-complex MC IV2+(I+III2+II)2 Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-DILAUROYL-SN-GLYCERO-3-PHOSPHATE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, ... Authors: Wu, M.C, Hu, Y.Q, Han, F.Z, Zhou, L. Deposit date: 2022-09-23 Release date: 2023-06-14 Method: ELECTRON MICROSCOPY (2.96 Å) Cite: Structures of Tetrahymena thermophila respiratory megacomplexes on the tubular mitochondrial cristae. Nat Commun, 14, 2023
8BHL	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-31 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.21 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BHP	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-31 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.37 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BH4	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-29 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.62 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BHN	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-31 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.85 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BHJ	Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-31 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.81 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BGE	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-27 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.11 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BIM	Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-11-02 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.04 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023
8BGH	Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ... Authors: Koziej, L, Glatt, S. Deposit date: 2022-10-27 Release date: 2023-08-16 Method: ELECTRON MICROSCOPY (2.88 Å) Cite: Modulation of translational decoding by m 6 A modification of mRNA. Nat Commun, 14, 2023

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