PDB: 52994 resultsInfo pagesStatus searchChemie searchBIRD

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8U5M	Structure of Sts-1 HP domain with rebamipide Descriptor: Rebamipide, Ubiquitin-associated and SH3 domain-containing protein B Authors: Azia, F, Dey, R, French, J.B. Deposit date: 2023-09-12 Release date: 2024-02-07 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.46 Å) Cite: Rebamipide and Derivatives are Potent, Selective Inhibitors of Histidine Phosphatase Activity of the Suppressor of T Cell Receptor Signaling Proteins. J.Med.Chem., 67, 2024
8U7E	Structure of Sts-1 HP domain with rebamipide derivative Descriptor: N-(4-ethylbenzoyl)-3-(2-oxo-1,2-dihydroquinolin-4-yl)-L-alanine, Ubiquitin-associated and SH3 domain-containing protein B Authors: Aziz, F, Dey, R, French, J.B. Deposit date: 2023-09-15 Release date: 2024-02-07 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.63 Å) Cite: Rebamipide and Derivatives are Potent, Selective Inhibitors of Histidine Phosphatase Activity of the Suppressor of T Cell Receptor Signaling Proteins. J.Med.Chem., 67, 2024
7KN8	Crystal structure of the GH74 xyloglucanase from Xanthomonas campestris (Xcc1752) Descriptor: 1,2-ETHANEDIOL, Cellulase, IODIDE ION, ... Authors: Araujo, E.A, Vieira, P.S, Murakami, M.T, Polikarpov, I. Deposit date: 2020-11-04 Release date: 2021-05-26 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors Nature Communications, 12, 2021
8I5K	Crystal structure of chitin oligosaccharide binding protein from Vibrio cholera in complex with chitotriose. Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ABC transporter substrate-binding protein, MAGNESIUM ION Authors: Ohnuma, T, Takeshita, D. Deposit date: 2023-01-25 Release date: 2024-01-03 Method: X-RAY DIFFRACTION (1.219 Å) Cite: Periplasmic chitooligosaccharide-binding protein requires a three-domain organization for substrate translocation. Sci Rep, 13, 2023
8I5J	Crystal structure of chitin oligosaccharide binding protein from Vibrio cholera. Descriptor: ABC transporter substrate-binding protein, MAGNESIUM ION Authors: Ohnuma, T, Takeshita, D. Deposit date: 2023-01-25 Release date: 2024-01-03 Method: X-RAY DIFFRACTION (1.602 Å) Cite: Periplasmic chitooligosaccharide-binding protein requires a three-domain organization for substrate translocation. Sci Rep, 13, 2023
8TCO	HCMV Trimer in complex with CS2it1p2_F7K Fab and CS4tt1p1_E3K Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CS2it1p2_F7K Fab heavy chain, ... Authors: Goldsmith, J.A, McLellan, J.S. Deposit date: 2023-07-02 Release date: 2023-08-09 Last modified: 2024-08-14 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Single-cell analysis of memory B cells from top neutralizers reveals multiple sites of vulnerability within HCMV Trimer and Pentamer. Immunity, 56, 2023
8TEA	HCMV Pentamer in complex with CS2pt1p2_A10L Fab and CS3pt1p4_C1L Fab Descriptor: CS2pt1p2_A10L Fab heavy chain, CS2pt1p2_A10L Fab light chain, CS3pt1p4_C1L Fab heavy chain, ... Authors: Goldsmith, J.A, McLellan, J.S. Deposit date: 2023-07-05 Release date: 2023-08-09 Last modified: 2024-08-14 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Single-cell analysis of memory B cells from top neutralizers reveals multiple sites of vulnerability within HCMV Trimer and Pentamer. Immunity, 56, 2023
8SUJ	Joint X-ray/neutron structure of Thermus thermophilus serine hydroxymethyltransferase (TthSHMT) in internal aldimine state Descriptor: SULFATE ION, Serine hydroxymethyltransferase Authors: Drago, V.N, Kovalevsky, A. Deposit date: 2023-05-12 Release date: 2023-08-16 Last modified: 2023-11-15 Method: NEUTRON DIFFRACTION (2.3 Å), X-RAY DIFFRACTION Cite: Revealing protonation states and tracking substrate in serine hydroxymethyltransferase with room-temperature X-ray and neutron crystallography. Commun Chem, 6, 2023
8SSJ	Room-temperature X-ray structure of human mitochondrial serine hydroxymethyltransferase (hSHMT2) Descriptor: CHLORIDE ION, Serine hydroxymethyltransferase, mitochondrial Authors: Drago, V.N, Kovalevsky, A. Deposit date: 2023-05-08 Release date: 2023-08-16 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Revealing protonation states and tracking substrate in serine hydroxymethyltransferase with room-temperature X-ray and neutron crystallography. Commun Chem, 6, 2023
8SSY	Room-temperature X-ray structure of Thermus thermophilus serine hydroxymethyltransferase (SHMT) bound with D-Ser in a pseudo-Michaelis complex Descriptor: D-SERINE, SULFATE ION, Serine hydroxymethyltransferase Authors: Drago, V.N, Kovalevsky, A. Deposit date: 2023-05-09 Release date: 2023-08-16 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Revealing protonation states and tracking substrate in serine hydroxymethyltransferase with room-temperature X-ray and neutron crystallography. Commun Chem, 6, 2023
8SUI	Joint X-ray/neutron structure of Thermus thermophilus serine hydroxymethyltransferase (TthSHMT) in internal aldimine state with L-Ser bound in a pre-Michalis complex Descriptor: SERINE, SULFATE ION, Serine hydroxymethyltransferase Authors: Drago, V.N, Kovalevsky, A. Deposit date: 2023-05-12 Release date: 2023-08-16 Last modified: 2023-11-15 Method: NEUTRON DIFFRACTION (2.3 Å), X-RAY DIFFRACTION Cite: Revealing protonation states and tracking substrate in serine hydroxymethyltransferase with room-temperature X-ray and neutron crystallography. Commun Chem, 6, 2023
8TWG	Crystal structure of tetracycline destructase Tet(56-2) Descriptor: 6-hydroxynicotinate 3-monooxygenase, FLAVIN-ADENINE DINUCLEOTIDE Authors: Kumar, H, Tang, W.K, Tolia, N. Deposit date: 2023-08-21 Release date: 2024-07-03 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Sequence-structure-function characterization of the emerging tetracycline destructase family of antibiotic resistance enzymes. Commun Biol, 7, 2024
8TWF	Crystal structure of tetracycline destructase Tet(56-3) Descriptor: 6-hydroxynicotinate 3-monooxygenase, FLAVIN-ADENINE DINUCLEOTIDE Authors: Kumar, H, Tang, W.K, Tolia, N. Deposit date: 2023-08-21 Release date: 2024-07-03 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Sequence-structure-function characterization of the emerging tetracycline destructase family of antibiotic resistance enzymes. Commun Biol, 7, 2024
6HT9	Mouse fetuin-B in complex with crayfish astacin Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Astacin, ... Authors: Gomis-Ruth, F.X, Goulas, T, Guevara, T, Cuppari, A. Deposit date: 2018-10-03 Release date: 2019-03-13 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structure of mammalian plasma fetuin-B and its mechanism of selective metallopeptidase inhibition. Iucrj, 6, 2019
8IAK	Cryo-EM structure of the yeast SPT-ORM2 (ORM2-S3A-N71A) complex Descriptor: PYRIDOXAL-5'-PHOSPHATE, Protein ORM2, Serine palmitoyltransferase 2, ... Authors: Xie, T, Gong, X. Deposit date: 2023-02-08 Release date: 2024-02-14 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Collaborative regulation of yeast SPT-Orm2 complex by phosphorylation and ceramide. Cell Rep, 43, 2024
6HY4	Co(II)-substituted Wells-Dawson binding to Hen Egg-White Lysozyme (HEWL) Descriptor: CHLORIDE ION, Co(II)-substituted Wells-Dawson, Lysozyme C Authors: Vandebroek, L, Van Meervelt, L, Parac-Vogt, T.N. Deposit date: 2018-10-19 Release date: 2019-10-30 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.83 Å) Cite: Noncovalent Complexes Formed between Metal-Substituted Polyoxometalates and Hen Egg White Lysozyme Eur J Inorg Chem, 2019
8IAJ	Cryo-EM structure of the yeast SPT-ORM2 (ORM2-S3A) complex Descriptor: N-[(2S,3R,4E)-1,3-dihydroxyoctadec-4-en-2-yl]tetracosanamide, PYRIDOXAL-5'-PHOSPHATE, Protein ORM2, ... Authors: Xie, T, Gong, X. Deposit date: 2023-02-08 Release date: 2024-02-14 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Collaborative regulation of yeast SPT-Orm2 complex by phosphorylation and ceramide. Cell Rep, 43, 2024
8IAM	Cryo-EM structure of the yeast SPT-ORM2 (ORM2-S3D) complex Descriptor: Chimera of Long chain base biosynthesis protein 1 and Serine palmitoyltransferase 1, N-[(2S,3R,4E)-1,3-dihydroxyoctadec-4-en-2-yl]tetracosanamide, PYRIDOXAL-5'-PHOSPHATE, ... Authors: Xie, T, Gong, X. Deposit date: 2023-02-08 Release date: 2024-02-14 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Collaborative regulation of yeast SPT-Orm2 complex by phosphorylation and ceramide. Cell Rep, 43, 2024
6HNL	Selenomethionine derivative of IdmH 96-104 loop truncation variant Descriptor: Putative polyketide cyclase IdmH Authors: Drulyte, I, Obajdin, J, Trinh, C, Hemsworth, G.R, Berry, A. Deposit date: 2018-09-16 Release date: 2019-11-06 Last modified: 2019-11-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structure of the putative cyclase IdmH from the indanomycin nonribosomal peptide synthase/polyketide synthase. Iucrj, 6, 2019
8R38	BIIG2 anti-integrin Fab Descriptor: BIIG2 Fab, heavy chain, light chain, ... Authors: Cordara, G, Heim, J.B, Johannesen, H, Krengel, U. Deposit date: 2023-11-08 Release date: 2024-09-25 Method: X-RAY DIFFRACTION (1.38 Å) Cite: Structural and functional characterization of integrin alpha5-targeting antibodies for anti-angiogenic therapy To Be Published
6I89	Crystal structure of Antirestriction ArdC protein from R388 plasmid. Metal-free structure. Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ArdC protein Authors: Gonzalez-Montes, L, Moncalian, G. Deposit date: 2018-11-19 Release date: 2020-03-18 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (2 Å) Cite: ArdC, a ssDNA-binding protein with a metalloprotease domain, overpasses the recipient hsdRMS restriction system broadening conjugation host range. Plos Genet., 16, 2020
8SJ7	Crystal structure of FBF-2 (RBD+CT) in complex with compact FBE RNA Descriptor: Fem-3 mRNA-binding factor 2, RNA (5'-R(*CP*UP*GP*UP*GP*AP*AP*UP*G)-3') Authors: Qiu, C, Hall, T.M.T. Deposit date: 2023-04-17 Release date: 2023-09-27 Last modified: 2024-04-10 Method: X-RAY DIFFRACTION (2.09 Å) Cite: Intra- and inter-molecular regulation by intrinsically-disordered regions governs PUF protein RNA binding. Nat Commun, 14, 2023
6HY6	Ni(II)-substituted Wells-Dawson binding to Hen Egg-White Lysozyme (HEWL) Descriptor: CHLORIDE ION, Lysozyme C, Ni(II)-substituted Wells-Dawson Authors: Vandebroek, L, Van Meervelt, L, Parac-Vogt, T.N. Deposit date: 2018-10-19 Release date: 2019-10-30 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.87 Å) Cite: Noncovalent Complexes Formed between Metal-Substituted Polyoxometalates and Hen Egg White Lysozyme Eur J Inorg Chem, 2019
6HYB	Zr(IV)-substituted Wells-Dawson binding to Hen Egg-White Lysozyme (HEWL) Descriptor: Lysozyme C, POTASSIUM ION, W-Zr-cluster Authors: Vandebroek, L, Van Meervelt, L, Parac-Vogt, T.N. Deposit date: 2018-10-19 Release date: 2019-10-30 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.964 Å) Cite: Noncovalent Complexes Formed between Metal-Substituted Polyoxometalates and Hen Egg White Lysozyme Eur J Inorg Chem, 2019
6HNN	Crystal structure of wild-type IdmH, a putative polyketide cyclase from Streptomyces antibioticus Descriptor: Putative polyketide cyclase IdmH Authors: Drulyte, I, Obajdin, J, Trinh, C, Hemsworth, G.R, Berry, A. Deposit date: 2018-09-16 Release date: 2019-11-06 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal structure of the putative cyclase IdmH from the indanomycin nonribosomal peptide synthase/polyketide synthase. Iucrj, 6, 2019

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