8TWG
Crystal structure of tetracycline destructase Tet(56-2)
Summary for 8TWG
| Entry DOI | 10.2210/pdb8twg/pdb |
| Descriptor | 6-hydroxynicotinate 3-monooxygenase, FLAVIN-ADENINE DINUCLEOTIDE (3 entities in total) |
| Functional Keywords | oxidoreductase |
| Biological source | Legionella clemsonensis |
| Total number of polymer chains | 1 |
| Total formula weight | 46388.47 |
| Authors | |
| Primary citation | Blake, K.S.,Kumar, H.,Loganathan, A.,Williford, E.E.,Diorio-Toth, L.,Xue, Y.P.,Tang, W.K.,Campbell, T.P.,Chong, D.D.,Angtuaco, S.,Wencewicz, T.A.,Tolia, N.H.,Dantas, G. Sequence-structure-function characterization of the emerging tetracycline destructase family of antibiotic resistance enzymes. Commun Biol, 7:336-336, 2024 Cited by PubMed Abstract: Tetracycline destructases (TDases) are flavin monooxygenases which can confer resistance to all generations of tetracycline antibiotics. The recent increase in the number and diversity of reported TDase sequences enables a deep investigation of the TDase sequence-structure-function landscape. Here, we evaluate the sequence determinants of TDase function through two complementary approaches: (1) constructing profile hidden Markov models to predict new TDases, and (2) using multiple sequence alignments to identify conserved positions important to protein function. Using the HMM-based approach we screened 50 high-scoring candidate sequences in Escherichia coli, leading to the discovery of 13 new TDases. The X-ray crystal structures of two new enzymes from Legionella species were determined, and the ability of anhydrotetracycline to inhibit their tetracycline-inactivating activity was confirmed. Using the MSA-based approach we identified 31 amino acid positions 100% conserved across all known TDase sequences. The roles of these positions were analyzed by alanine-scanning mutagenesis in two TDases, to study the impact on cell and in vitro activity, structure, and stability. These results expand the diversity of TDase sequences and provide valuable insights into the roles of important residues in TDases, and flavin monooxygenases more broadly. PubMed: 38493211DOI: 10.1038/s42003-024-06023-w PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (1.8 Å) |
Structure validation
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