5UZ3
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![BU of 5uz3 by Molmil](/molmil-images/mine/5uz3) | Solution Structure of a DNA Dodecamer with 5-methylcytosine at the 9th position and 8-oxoguanine at the 10th position | Descriptor: | DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(DMC)P*(8OG)P*CP*G)-3') | Authors: | Gruber, D.R, Hoppins, J.J, Miears, H.L, Endutkin, A.V, Zharkov, D.O, Smirnov, S.L. | Deposit date: | 2017-02-24 | Release date: | 2017-05-31 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation. Nucleic Acids Res., 46, 2018
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5UZ2
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![BU of 5uz2 by Molmil](/molmil-images/mine/5uz2) | Solution Structure of a DNA Dodecamer with 5-methylcytosine at the 3rd and 9th position and 8-oxoguanine at the 10th position | Descriptor: | DNA (5'-D(*CP*GP*(DMC)P*GP*AP*AP*TP*TP*(DMC)P*(8OG)P*CP*G)-3') | Authors: | Gruber, D.R, Hoppins, J.J, Miears, H.L, Endutkin, A.V, Zharkov, D.O, Smirnov, S.L. | Deposit date: | 2017-02-24 | Release date: | 2017-03-29 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation. Nucleic Acids Res., 46, 2018
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8PJL
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![BU of 8pjl by Molmil](/molmil-images/mine/8pjl) | |
7XH3
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![BU of 7xh3 by Molmil](/molmil-images/mine/7xh3) | |
6J37
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![BU of 6j37 by Molmil](/molmil-images/mine/6j37) | DNA minidumbbell structure of two CTTG repeats | Descriptor: | DNA (5'-D(*CP*TP*TP*GP*CP*TP*TP*G)-3'), SODIUM ION | Authors: | Lam, S.L, Guo, P. | Deposit date: | 2019-01-04 | Release date: | 2019-05-29 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Unprecedented hydrophobic stabilizations from a reverse wobble T·T mispair in DNA minidumbbell. J.Biomol.Struct.Dyn., 38, 2020
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1ZI0
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![BU of 1zi0 by Molmil](/molmil-images/mine/1zi0) | |
5TGP
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![BU of 5tgp by Molmil](/molmil-images/mine/5tgp) | DNA 8mer containing two 2SeT modifications | Descriptor: | DNA/RNA (5'-R(*G)-D(P*(2ST))-R(P*G)-D(P*(2ST))-R(P*AP*CP*AP*C)-3') | Authors: | Zhang, W, Huang, Z. | Deposit date: | 2016-09-28 | Release date: | 2017-10-18 | Last modified: | 2023-10-04 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | DNA 8mer containing two 2SeT modifications To Be Published
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1QL5
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![BU of 1ql5 by Molmil](/molmil-images/mine/1ql5) | DNA DECAMER DUPLEX CONTAINING T5-T6 PHOTOADDUCT | Descriptor: | DNA (5'-D(*CP*GP*CP*AP*TP*+TP*AP*CP*GP*C)- 3'), DNA (5'-D(*GP*CP*GP*TP*TP*AP*TP*GP*CP*G)-3') | Authors: | Lee, J.-H, Hwang, G.-S, Choi, B.-S. | Deposit date: | 1999-08-24 | Release date: | 2000-04-10 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Solution Structure of a DNA Decamer Duplex Containing the 3' T.T Base Pair of the Cis-Syn Cyclobutane Pyrimidine Dimer: Implication for the Mutagenic Property of the Cis-Syn Dimer. Nucleic Acids Res., 28, 2000
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1ZHU
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![BU of 1zhu by Molmil](/molmil-images/mine/1zhu) | DNA (5'-D(*CP*AP*AP*TP*GP*CP*AP*AP*TP*G)-3'), NMR, 10 STRUCTURES | Descriptor: | DNA (5'-D(*CP*AP*AP*TP*GP*CP*AP*AP*TP*G)-3') | Authors: | Zhu, L, Chou, S.-H, Xu, J, Reid, B.R. | Deposit date: | 1996-01-24 | Release date: | 1996-07-11 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Structure of a single-cytidine hairpin loop formed by the DNA triplet GCA. Nat.Struct.Biol., 2, 1995
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1BWG
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![BU of 1bwg by Molmil](/molmil-images/mine/1bwg) | DNA TRIPLEX WITH 5' AND 3' JUNCTIONS, NMR, 10 STRUCTURES | Descriptor: | DNA (5'-D(*CP*TP*CP*TP*CP*T)-3'), DNA (5'-D(*GP*AP*CP*TP*GP*AP*GP*AP*GP*AP*CP*GP*TP*A)-3'), DNA (5'-D(*TP*AP*CP*GP*TP*CP*TP*CP*TP*CP*AP*GP*TP*C)-3') | Authors: | Asensio, J.L, Brown, T, Lane, A.N. | Deposit date: | 1998-09-22 | Release date: | 1999-03-23 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Solution conformation of a parallel DNA triple helix with 5' and 3' triplex-duplex junctions. Structure Fold.Des., 7, 1999
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1CFL
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![BU of 1cfl by Molmil](/molmil-images/mine/1cfl) | DNA DECAMER DUPLEX CONTAINING T5-T6 PHOTOADDUCT | Descriptor: | DNA (5'-D(*CP*GP*CP*AP*(64T)P*TP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*TP*GP*AP*TP*GP*CP*G)-3') | Authors: | Lee, J.-H, Hwang, G.-S, Choi, B.-S. | Deposit date: | 1999-03-19 | Release date: | 1999-05-28 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | Solution structure of a DNA decamer duplex containing the stable 3' T.G base pair of the pyrimidine(6-4)pyrimidone photoproduct [(6-4) adduct]: implications for the highly specific 3' T --> C transition of the (6-4) adduct. Proc.Natl.Acad.Sci.USA, 96, 1999
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2M3P
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![BU of 2m3p by Molmil](/molmil-images/mine/2m3p) | DNA containing a cluster of 8-oxo-guanine and abasic site lesion: alpha anomer | Descriptor: | DNA (5'-D(*CP*GP*CP*TP*CP*(ORP)P*CP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*TP*GP*GP*GP*AP*(8OG)P*CP*G)-3') | Authors: | Zalesak, J, Jourdan, M, Lourdin, M, Constant, J. | Deposit date: | 2013-01-25 | Release date: | 2014-01-08 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Structure and dynamics of DNA duplexes containing a cluster of mutagenic 8-oxoguanine and abasic site lesions. J.Mol.Biol., 426, 2014
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2M40
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![BU of 2m40 by Molmil](/molmil-images/mine/2m40) | DNA containing a cluster of 8-oxo-guanine and THF lesion | Descriptor: | DNA (5'-D(*CP*GP*CP*TP*CP*(3DR)P*CP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*TP*GP*GP*GP*AP*(8OG)P*CP*G)-3') | Authors: | Zalesak, J, Jourdan, M, Constant, J, Lourdin, M. | Deposit date: | 2013-01-28 | Release date: | 2014-01-08 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Structure and dynamics of DNA duplexes containing a cluster of mutagenic 8-oxoguanine and abasic site lesions. J.Mol.Biol., 426, 2014
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2M43
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![BU of 2m43 by Molmil](/molmil-images/mine/2m43) | DNA containing a cluster of 8-oxo-guanine and abasic site lesion: alpha anomer (AP6, 8OG 14) | Descriptor: | DNA (5'-D(*CP*GP*CP*TP*CP*(ORP)P*CP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*(8OG)P*TP*GP*GP*GP*AP*GP*CP*G)-3') | Authors: | Zalesak, J, Jourdan, M, Constant, J, Lourdin, M. | Deposit date: | 2013-01-29 | Release date: | 2014-01-08 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Structure and dynamics of DNA duplexes containing a cluster of mutagenic 8-oxoguanine and abasic site lesions. J.Mol.Biol., 426, 2014
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2M44
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![BU of 2m44 by Molmil](/molmil-images/mine/2m44) | DNA containing a cluster of 8-oxo-guanine and abasic site lesion: beta anomer (6AP, 8OG14) | Descriptor: | DNA (5'-D(*CP*GP*CP*TP*CP*(AAB)P*CP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*(8OG)P*TP*GP*GP*GP*AP*GP*CP*G)-3') | Authors: | Zalesak, J, Jourdan, M, Constant, J, Lourdin, M. | Deposit date: | 2013-01-29 | Release date: | 2014-01-08 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | Structure and dynamics of DNA duplexes containing a cluster of mutagenic 8-oxoguanine and abasic site lesions. J.Mol.Biol., 426, 2014
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2M3Y
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![BU of 2m3y by Molmil](/molmil-images/mine/2m3y) | DNA containing a cluster of 8-oxo-guanine and abasic site lesion: beta anomer | Descriptor: | DNA (5'-D(*CP*GP*CP*TP*CP*(AAB)P*CP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*TP*GP*GP*GP*AP*(8OG)P*CP*G)-3') | Authors: | Zalesak, J, Jourdan, M, Constant, J, Lourdin, M. | Deposit date: | 2013-01-28 | Release date: | 2014-01-08 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Structure and dynamics of DNA duplexes containing a cluster of mutagenic 8-oxoguanine and abasic site lesions. J.Mol.Biol., 426, 2014
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2KEB
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![BU of 2keb by Molmil](/molmil-images/mine/2keb) | NMR solution structure of the N-terminal domain of the DNA polymerase alpha p68 subunit | Descriptor: | DNA polymerase subunit alpha B | Authors: | Huang, H, Weiner, B.E, Zhang, H, Fuller, B.E, Gao, Y, Wile, B.M, Chazin, W.J, Fanning, E. | Deposit date: | 2009-01-28 | Release date: | 2010-02-02 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Structure of a DNA polymerase alpha-primase domain that docks on the SV40 helicase and activates the viral primosome. J.Biol.Chem., 285, 2010
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4JWE
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![BU of 4jwe by Molmil](/molmil-images/mine/4jwe) | |
4JWI
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![BU of 4jwi by Molmil](/molmil-images/mine/4jwi) | |
4JWC
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![BU of 4jwc by Molmil](/molmil-images/mine/4jwc) | |
4JWD
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![BU of 4jwd by Molmil](/molmil-images/mine/4jwd) | |
4F00
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![BU of 4f00 by Molmil](/molmil-images/mine/4f00) | |
1AC9
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![BU of 1ac9 by Molmil](/molmil-images/mine/1ac9) | SOLUTION STRUCTURE OF A DNA DECAMER CONTAINING THE ANTIVIRAL DRUG GANCICLOVIR: COMBINED USE OF NMR, RESTRAINED MOLECULAR DYNAMICS, AND FULL RELAXATION REFINEMENT, 6 STRUCTURES | Descriptor: | DNA | Authors: | Foti, M, Marshalko, S, Schurter, E, Kumar, S, Beardsley, G.P, Schweitzer, B.I. | Deposit date: | 1997-02-17 | Release date: | 1997-07-07 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Solution structure of a DNA decamer containing the antiviral drug ganciclovir: combined use of NMR, restrained molecular dynamics, and full relaxation matrix refinement. Biochemistry, 36, 1997
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4UQM
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![BU of 4uqm by Molmil](/molmil-images/mine/4uqm) | Crystal structure determination of uracil-DNA N-glycosylase (UNG) from Deinococcus radiodurans in complex with DNA - new insights into the role of the Leucine-loop for damage recognition and repair | Descriptor: | 5'-D(*CP*CP*TP*AP*TP*CP*CP*AP*AAB*GP*TP*CP*TP*CP*CP*G)-3', 5'-D(*GP*CP*GP*GP*AP*GP*AP*CP*AP*TP*GP*GP*AP*CP*AP*G)-3', CHLORIDE ION, ... | Authors: | Pedersen, H.L, Johnson, K.A, McVey, C.E, Leiros, I, Moe, E. | Deposit date: | 2014-06-24 | Release date: | 2015-08-12 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (1.35 Å) | Cite: | Structure determination of uracil-DNA N-glycosylase from Deinococcus radiodurans in complex with DNA. Acta Crystallogr. D Biol. Crystallogr., 71, 2015
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3JRB
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![BU of 3jrb by Molmil](/molmil-images/mine/3jrb) | |