PDB: 46169 resultsInfo pagesStatus searchChemie searchBIRD

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8G1I	SpCas9 with sgRNA and target DNA Descriptor: CRISPR-associated endonuclease Cas9/Csn1, DNA E2_NTS, DNA E2_TS, ... Authors: Korolev, S, Gagnon, K. Deposit date: 2023-02-02 Release date: 2023-05-17 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.12 Å) Cite: SpCas9 with sgRNA and target DNA To Be Published
6KFJ	NMR solution structure of the 1:1 complex of wtTel26 G-quadruplex and a tripodal cationic fluorescent probe NBTE Descriptor: 4,4',4''-(nitrilotris(benzene-4,1-diyl))tris(1-ethylpyridin-1-ium) iodide, G-quadruplex DNA wtTel26 Authors: Liu, W, Liu, L.Y, Mao, Z.W. Deposit date: 2019-07-07 Release date: 2020-07-01 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Quantitative Detection of G-Quadruplex DNA in Live Cells Based on Photon Counts and Complex Structure Discrimination. Angew.Chem.Int.Ed.Engl., 59, 2020
2OH2	Ternary Complex of Human DNA Polymerase Descriptor: 5'-D(*GP*GP*G*GP*GP*AP*AP*GP*GP*AP*CP*CP*C)-3', 5'-D(*TP*T*CP*CP*AP*GP*GP*GP*TP*CP*CP*TP*TP*CP*CP*CP*CP*C)-3', DNA polymerase kappa, ... Authors: Lone, S, Townson, S.A, Uljon, S.N, Prakash, S, Prakash, L, Aggarwal, A.K. Deposit date: 2007-01-09 Release date: 2007-02-27 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (3.05 Å) Cite: Ternary complex of the catalytic core of human DNA polymerase Kappa with DNA and dTT To be Published
1TF3	TFIIIA FINGER 1-3 BOUND TO DNA, NMR, 22 STRUCTURES Descriptor: 5S RNA GENE, TRANSCRIPTION FACTOR IIIA, ZINC ION Authors: Foster, M.P, Wuttke, D.S, Radhakrishnan, I, Case, D.A, Gottesfeld, J.M, Wright, P.E. Deposit date: 1997-07-01 Release date: 1997-09-17 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Domain packing and dynamics in the DNA complex of the N-terminal zinc fingers of TFIIIA. Nat.Struct.Biol., 4, 1997
1QDA	Crystal structure of epidoxorubicin-formaldehyde virtual crosslink of DNA Descriptor: 4'-EPIDOXORUBICIN, 5' -D(CP*GP*CP*(G49)P*CP*GP)-3' Authors: Podell, E.R, Harrington, D.J, Taatjes, D.J, Koch, T.H. Deposit date: 1999-05-17 Release date: 1999-09-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structure of epidoxorubicin-formaldehyde virtual crosslink of DNA and evidence for its formation in human breast-cancer cells. Acta Crystallogr.,Sect.D, 55, 1999
6IY3	Structure of Snf2-MMTV-A nucleosome complex at shl-2 in ADP state Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA (147-MER), Histone H2A, ... Authors: Li, M, Xia, X, Liu, X, Li, X, Chen, Z. Deposit date: 2018-12-12 Release date: 2019-04-03 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (3.67 Å) Cite: Mechanism of DNA translocation underlying chromatin remodelling by Snf2. Nature, 567, 2019
1NJF	Nucleotide bound form of an isolated E. coli clamp loader gamma subunit Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA polymerase III subunit gamma, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... Authors: Podobnik, M, Weitze, T.F, O'Donnell, M, Kuriyan, J. Deposit date: 2002-12-30 Release date: 2003-04-08 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Nucleotide-Induced Conformational Changes in an Isolated Escherichia coli DNA Polymerase III Clamp Loader Subunit Structure, 11, 2003
7L6S	Crystal structure of the ATPase and transducer domains of DNA topoisomerase II from Balamuthia mandrillaris CDC:V039: baboon/San Diego/1986 Descriptor: 1,2-ETHANEDIOL, DNA topoisomerase II, MAGNESIUM ION, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2020-12-23 Release date: 2021-01-13 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Crystal Structure of the ATPase and transducer domains of DNA topoisomerase II from Balamuthia mandrillaris Lepto ID: CDC:V039: baboon/San Diego/1986 To be Published
1EV7	CRYSTAL STRUCTURE OF DNA RESTRICTION ENDONUCLEASE NAEI Descriptor: TYPE IIE RESTRICTION ENDONUCLEASE NAEI Authors: Huai, Q, Colandene, J.D, Chen, Y, Luo, F, Zhao, Y. Deposit date: 2000-04-19 Release date: 2000-10-19 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.38 Å) Cite: Crystal structure of NaeI-an evolutionary bridge between DNA endonuclease and topoisomerase. EMBO J., 19, 2000
7EEO	Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA Descriptor: COBALT HEXAMMINE(III), DNA/RNA (27-MER) Authors: Kondo, J, Sekiguchi, S. Deposit date: 2021-03-19 Release date: 2022-03-23 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.701 Å) Cite: Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA To Be Published
7EEN	Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA Descriptor: CALCIUM ION, DNA/RNA (27-MER) Authors: Kondo, J, Sekiguchi, S. Deposit date: 2021-03-19 Release date: 2022-03-23 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA To Be Published
1R2L	A parallel stranded DNA duplex with an A-G mismatch base-pair Descriptor: 5'-D(P*CP*CP*TP*AP*TP*GP*AP*AP*AP*TP*CP*C)-3', DNA (5'-D(P*(DNR)P*(DNR)P*DAP*DTP*DAP*DAP*DTP*DTP*DTP*DAP*(DNR)P*(DNR))-3') Authors: Venkitakrishnan, R.P, Bhaumik, S.R, Chary, K.V.R, govil, G, Liu, K, Howard, F.B, Miles, T.H. Deposit date: 2003-09-29 Release date: 2004-10-12 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: A parallel stranded DNA duplex with an A-G mismatch base-pair: (CCATAATTTACC:CCTATGAAATCC) RECENT TRENDS IN BIOPHYS.RES., 2004
3I2M	The Crystal Structure of PF-8, the DNA Polymerase Accessory Subunit from Kaposi s Sarcoma-Associated Herpesvirus Descriptor: ORF59 Authors: Baltz, J.L, Filman, D.J, Ciustea, M, Silverman, J.E.Y, Lautenschlager, C.L, Coen, D.M, Ricciardi, R.P, Hogle, J.M. Deposit date: 2009-06-29 Release date: 2010-05-12 Last modified: 2021-10-13 Method: X-RAY DIFFRACTION (2.81 Å) Cite: The crystal structure of PF-8, the DNA polymerase accessory subunit from Kaposi's sarcoma-associated herpesvirus. J.Virol., 83, 2009
3I5E	Allosteric Modulation of DNA by Small Molecules Descriptor: 5'-D(*CP*CP*AP*GP*GP*CP*CP*TP*GP*G)-3', CALCIUM ION Authors: Chenoweth, D.M, Dervan, P.B. Deposit date: 2009-07-05 Release date: 2009-07-28 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (0.98 Å) Cite: Allosteric modulation of DNA by small molecules Proc.Natl.Acad.Sci.USA, 106, 2009
6IIR	Complex structure of the HRP3 PWWP domain with a 10-bp GC-rich DNA Descriptor: 10-bp GC-rich DNA, Hepatoma-derived growth factor-related protein 3 Authors: Wang, Z, Tian, W. Deposit date: 2018-10-07 Release date: 2019-04-24 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Complex structure of the HRP3 PWWP domain with a 10-bp GC-rich DNA Nucleic Acids Res., 2019
2V6E	protelomerase TelK complexed with substrate DNA Descriptor: PROTELEMORASE, TELRL, VANADATE ION Authors: Aihara, H, Huang, W.M, Ellenberger, T. Deposit date: 2007-07-17 Release date: 2007-10-02 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.2 Å) Cite: An Interlocked Dimer of the Protelomerase Telk Distorts DNA Structure for the Formation of Hairpin Telomeres Mol.Cell, 27, 2007
7BBQ	Crystal structure of the HTH DNA binding protein ArdK from R388 plasmid. Apo form. Descriptor: KORA domain-containing protein Authors: Fernandez-Lopez, R, Boer, D.R, Moncalian, G. Deposit date: 2020-12-18 Release date: 2022-07-13 Last modified: 2022-12-14 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural basis of direct and inverted DNA sequence repeat recognition by helix-turn-helix transcription factors. Nucleic Acids Res., 50, 2022
1SVU	Structure of the Q237W mutant of HhaI DNA methyltransferase: an insight into protein-protein interactions Descriptor: Modification methylase HhaI, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION, ... Authors: Dong, A, Zhou, L, Zhang, X, Stickel, S, Roberts, R.J, Cheng, X. Deposit date: 2004-03-30 Release date: 2004-06-29 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.66 Å) Cite: Structure of the Q237W mutant of HhaI DNA methyltransferase: an insight into protein-protein interactions Biol.Chem., 385, 2004
2NNU	Crystal Structure of the Papillomavirus DNA Tethering Complex E2:Brd4 Descriptor: Bromodomain-containing protein 4, Regulatory protein E2 Authors: Abbate, E.A, Voitenleitner, C, Botchan, M.R. Deposit date: 2006-10-24 Release date: 2007-01-09 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.59 Å) Cite: Structure of the Papillomavirus DNA-Tethering Complex E2:Brd4 and a Peptide that Ablates HPV Chromosomal Association. Mol.Cell, 24, 2006
6IIS	Complex structure of the HRP3 PWWP domain with both a 16-bp TA-rich DNA and an H3K36me3-containing histone peptide Descriptor: 16-bp TA-rich DNA, H3K36me3 peptide, Hepatoma-derived growth factor-related protein 3 Authors: Wang, Z, Tian, W. Deposit date: 2018-10-07 Release date: 2019-04-24 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.358 Å) Cite: Complex structure of the HRP3 PWWP domain with both a 16-bp TA-rich DNA and an H3K36me3-containing histone peptide Nucleic Acids Res., 2019
3I5L	Allosteric Modulation of DNA by Small Molecules Descriptor: (22R,51R)-22,51-diamino-5,11,17,28,34,40,46,57-octamethyl-2,5,8,11,14,17,20,25,28,31,34,37,40,43,46,49,54,57,60,61,64,6 5-docosaazanonacyclo[54.2.1.1~4,7~.1~10,13~.1~16,19~.1~27,30~.1~33,36~.1~39,42~.1~45,48~]hexahexaconta-1(58),4(66),6,10( 65),12,16(64),18,27(63),29,33(62),35,39(61),41,45(60),47,56(59)-hexadecaene-3,9,15,21,26,32,38,44,50,55-decone, 5'-D(*CP*CP*AP*GP*GP*(C38)P*CP*TP*GP*G)-3', CALCIUM ION Authors: Chenoweth, D.M, Dervan, P.B. Deposit date: 2009-07-05 Release date: 2009-07-28 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.18 Å) Cite: Allosteric modulation of DNA by small molecules Proc.Natl.Acad.Sci.USA, 106, 2009
3QG5	The Mre11:Rad50 complex forms an ATP dependent molecular clamp in DNA double-strand break repair Descriptor: GLYCEROL, Mre11, rad50 Authors: Lammens, K. Deposit date: 2011-01-24 Release date: 2011-04-20 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (3.4 Å) Cite: The Mre11:Rad50 Structure Shows an ATP-Dependent Molecular Clamp in DNA Double-Strand Break Repair. Cell(Cambridge,Mass.), 145, 2011
3HSL	The Crystal Structure of PF-8, the DNA Polymerase Accessory Subunit from Kaposi's Sarcoma-Associated Herpesvirus Descriptor: ORF59 Authors: Baltz, J.L, Filman, D.J, Ciustea, M, Silverman, J.E.Y, Lautenschlager, C.L, Coen, D.M, Ricciardi, R.P, Hogle, J.M. Deposit date: 2009-06-10 Release date: 2009-11-24 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.8 Å) Cite: The crystal structure of PF-8, the DNA polymerase accessory subunit from Kaposi's sarcoma-associated herpesvirus. J.Virol., 83, 2009
1S88	NMR structure of a DNA duplex with two INA nucleotides inserted opposite each other, dCTCAACXCAAGCT:dAGCTTGXGTTGAG Descriptor: 5'-D(*AP*GP*CP*TP*TP*GP*(2DM)P*GP*TP*TP*GP*AP*G)-3', 5'-D(*CP*TP*CP*AP*AP*CP*(2DM)P*CP*AP*AP*GP*CP*T)-3' Authors: Nielsen, C.B, Petersen, M, Pedersen, E.B, Hansen, P.E, Christensen, U.B. Deposit date: 2004-01-31 Release date: 2004-05-25 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: NMR structure determination of a modified DNA oligonucleotide containing a new intercalating nucleic acid. Bioconjug.Chem., 15, 2004
1DL8	CRYSTAL STRUCTURE OF 5-F-9-AMINO-(N-(2-DIMETHYLAMINO)ETHYL)ACRIDINE-4-CARBOXAMIDE BOUND TO D(CGTACG)2 Descriptor: 5-FLUORO-9-AMINO-(N-(2-DIMETHYLAMINO)ETHYL)ACRIDINE-4-CARBOXAMIDE, DNA (5'-D(*CP*GP*TP*AP*CP*G)-3') Authors: Adams, A, Guss, J.M, Collyer, C.A, Denny, W.A, Wakelin, L.P. Deposit date: 1999-12-08 Release date: 2000-10-30 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Acridinecarboxamide topoisomerase poisons: structural and kinetic studies of the DNA complexes of 5-substituted 9-amino-(N-(2-dimethylamino)ethyl)acridine-4-carboxamides. Mol.Pharmacol., 58, 2000

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