Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3PBJ
DownloadVisualize
BU of 3pbj by Molmil
Hydrolytic catalysis and structural stabilization in a designed metalloprotein
Descriptor: CHLORIDE ION, COIL SER L9L-Pen L23H, MERCURY (II) ION, ...
Authors:Zastrow, M.L, Peacock, A.F.A, Stuckey, J.A, Pecoraro, V.L.
Deposit date:2010-10-20
Release date:2011-11-30
Last modified:2022-05-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Hydrolytic catalysis and structural stabilization in a designed metalloprotein.
Nat Chem, 4, 2012
4EW7
DownloadVisualize
BU of 4ew7 by Molmil
The crystal structure of conjugative transfer PAS_like domain from Salmonella enterica subsp. enterica serovar Typhimurium
Descriptor: ACETIC ACID, CHLORIDE ION, Conjugative transfer: regulation, ...
Authors:Wu, R, Jedrzejczak, R.P, Brown, R.N, Cort, J.R, Heffron, F, Nakayasu, E.S, Adkins, J.N, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Program for the Characterization of Secreted Effector Proteins (PCSEP)
Deposit date:2012-04-26
Release date:2012-09-12
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:The crystal structure of conjugative transfer PAS_like domain from Salmonella enterica subsp. enterica serovar Typhimurium
To be Published
4NHS
DownloadVisualize
BU of 4nhs by Molmil
X-ray structure of the complex between hen egg white lysozyme and pentachlorocarbonyliridate(III) (9 days)
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION, ...
Authors:Petruk, A.A, Bikiel, D.E, Vergara, A, Merlino, A.
Deposit date:2013-11-05
Release date:2014-09-17
Last modified:2015-06-24
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Interaction between proteins and Ir based CO releasing molecules: mechanism of adduct formation and CO release.
Inorg.Chem., 53, 2014
2VWM
DownloadVisualize
BU of 2vwm by Molmil
Aminopyrrolidine Factor Xa inhibitor
Descriptor: (4R)-4-{[(5-chlorothiophen-2-yl)carbonyl]amino}-N-(cyclopropylmethyl)-1-(2-{[2-fluoro-4-(2-oxopyridin-1(2H)-yl)phenyl]amino}-2-oxoethyl)-L-prolinamide, ACTIVATED FACTOR XA HEAVY CHAIN, FACTOR X LIGHT CHAIN, ...
Authors:Groebke-Zbinden, K, Banner, D.W, Benz, J.M, Blasco, F, Decoret, G, Himber, J, Kuhn, B, Panday, N, Ricklin, F, Risch, P, Schlatter, D, Stahl, M, Unger, R, Haap, W.
Deposit date:2008-06-26
Release date:2009-07-07
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Design of Novel Aminopyrrolidine Factor Xa Inhibitors from a Screening Hit.
Eur.J.Med.Chem., 44, 2009
4NHX
DownloadVisualize
BU of 4nhx by Molmil
Crystal structure of human OGFOD1, 2-oxoglutarate and iron-dependent oxygenase domain containing 1, in complex with N-oxalylglycine (NOG)
Descriptor: 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 1, GLYCEROL, MANGANESE (II) ION, ...
Authors:Horita, S, McDonough, M.A, Schofield, C.J.
Deposit date:2013-11-05
Release date:2014-11-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.105 Å)
Cite:Structure of the Ribosomal Oxygenase OGFOD1 Provides Insights into the Regio- and Stereoselectivity of Prolyl Hydroxylases.
Structure, 23, 2015
4NIJ
DownloadVisualize
BU of 4nij by Molmil
X-ray structure of the complex between hen egg white lysozyme and pentachlorocarbonyliridate(III) (30 days)
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION, ...
Authors:Petruk, A.A, Bikiel, D.E, Vergara, A, Merlino, A.
Deposit date:2013-11-06
Release date:2014-09-17
Last modified:2015-06-24
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Interaction between proteins and Ir based CO releasing molecules: mechanism of adduct formation and CO release.
Inorg.Chem., 53, 2014
3PDV
DownloadVisualize
BU of 3pdv by Molmil
Structure of the PDlim2 PDZ domain in complex with the C-terminal 6-peptide extension of NS1
Descriptor: PDZ and LIM domain protein 2, C-teminal peptide from Nonstructural protein 1, SODIUM ION
Authors:Li, X.
Deposit date:2010-10-25
Release date:2011-09-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:PDlim2 selectively interacts with the PDZ binding motif of highly pathogenic avian H5N1 influenza A virus NS1
Plos One, 6, 2011
3PC4
DownloadVisualize
BU of 3pc4 by Molmil
Full length structure of cystathionine beta-synthase from Drosophila in complex with serine
Descriptor: (E)-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-serine, CG1753, isoform A, ...
Authors:Koutmos, M, Smith, J.L.
Deposit date:2010-10-21
Release date:2010-12-01
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for substrate activation and regulation by cystathionine beta-synthase (CBS) domains in cystathionine {beta}-synthase.
Proc.Natl.Acad.Sci.USA, 107, 2010
2VVC
DownloadVisualize
BU of 2vvc by Molmil
Aminopyrrolidine Factor Xa inhibitor
Descriptor: 5-chloro-N-[(3S,4S)-1-(2-{[2-fluoro-4-(2-oxopyridin-1(2H)-yl)phenyl]amino}-2-oxoethyl)-4-methoxypyrrolidin-3-yl]thiophene-2-carboxamide, ACTIVATED FACTOR XA HEAVY CHAIN, CALCIUM ION, ...
Authors:Groebke-Zbinden, K, Banner, D.W, Benz, J.M, Blasco, F, Decoret, G, Himber, J, Kuhn, B, Panday, N, Ricklin, F, Risch, P, Schlatter, D, Stahl, M, Unger, R, Haap, W.
Deposit date:2008-06-05
Release date:2009-07-07
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Design of Novel Aminopyrrolidine Factor Xa Inhibitors from a Screening Hit.
Eur.J.Med.Chem., 44, 2009
4MUA
DownloadVisualize
BU of 4mua by Molmil
Schistosoma mansoni (Blood Fluke) Sulfotransferase
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, SODIUM ION, Sulfotransferase
Authors:Valentim, C.L.L, Cioli, D, Chevalier, F.D, Cao, X, Taylor, A.B, Holloway, S.P, Pica-Mattoccia, L, Guidi, A, Basso, A, Tsai, I.J, Berriman, M, Carvalho-Queiroz, C, Almeida, M, Aguilar, H, Frantz, D.E, Hart, P.J, Anderson, T.J.C, LoVerde, P.T.
Deposit date:2013-09-21
Release date:2013-12-18
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Genetic and molecular basis of drug resistance and species-specific drug action in schistosome parasites.
Science, 342, 2013
3PBX
DownloadVisualize
BU of 3pbx by Molmil
Strontium bound to the sequence d(CCGGCGCCGG)
Descriptor: DNA, SODIUM ION, STRONTIUM ION
Authors:Naseer, A, Cardin, C.J.
Deposit date:2010-10-21
Release date:2011-02-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.879 Å)
Cite:Strontium bound to the sequence d(CCGGCGCCGG)
To be Published
4MZX
DownloadVisualize
BU of 4mzx by Molmil
Crystal Structure of Benzoylformate Decarboxylase Mutant T377L/A460Y
Descriptor: 2-{3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-4-METHYL-2-OXO-2,3-DIHYDRO-1,3-THIAZOL-5-YL}ETHYL TRIHYDROGEN DIPHOSPHATE, Benzoylformate decarboxlyase, CALCIUM ION, ...
Authors:Andrews, F.H, McLeish, M.J.
Deposit date:2013-09-30
Release date:2015-04-01
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.558 Å)
Cite:Mechanistic and structural insight to an evolved benzoylformate decarboxylase with enhanced activity towards pyruvate
To be Published
2X7R
DownloadVisualize
BU of 2x7r by Molmil
Crystal structure of a late fusion intermediate of HIV-1 gp41
Descriptor: CHLORIDE ION, SODIUM ION, TRANSMEMBRANE PROTEIN GP41
Authors:Natrajan, G, Buzon, V, Weissenhorn, W.
Deposit date:2010-03-03
Release date:2010-05-26
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of HIV-1 Gp41 Including Both Fusion Peptide and Membrane Proximal External Regions.
Plos Pathog., 6, 2010
3PK8
DownloadVisualize
BU of 3pk8 by Molmil
Urate oxidase under 0.5 MPa / 5 bars pressure of nitrous oxide
Descriptor: 8-AZAXANTHINE, SODIUM ION, Uricase
Authors:Marassio, G, Colloc'h, N, Prange, T, Abraini, J.H.
Deposit date:2010-11-11
Release date:2011-04-06
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Pressure-response analysis of anesthetic gases xenon and nitrous oxide on urate oxidase: a crystallographic study.
Faseb J., 25, 2011
3PLG
DownloadVisualize
BU of 3plg by Molmil
urate oxidase under 1.0 MPa / 10 bars pressure of equimolar mixture xenon : nitrous oxide
Descriptor: 8-AZAXANTHINE, NITROUS OXIDE, SODIUM ION, ...
Authors:Marassio, G, Colloc'h, N, Prange, T, Abraini, J.H.
Deposit date:2010-11-15
Release date:2011-04-06
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.601 Å)
Cite:Pressure-response analysis of anesthetic gases xenon and nitrous oxide on urate oxidase: a crystallographic study.
Faseb J., 25, 2011
4DRT
DownloadVisualize
BU of 4drt by Molmil
Three dimensional structure of de novo designed serine hydrolase OSH26, Northeast Structural Genomics Consortium (NESG) target OR89
Descriptor: CHLORIDE ION, SODIUM ION, de novo designed serine hydrolase, ...
Authors:Kuzin, A, Su, M, Rajagopalan, S, Seetharaman, J, Sahdev, S, Xiao, R, Ciccosanti, C, Baker, D, Everett, J.K, Acton, T.B, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2012-02-17
Release date:2012-04-18
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.002 Å)
Cite:Design of activated serine-containing catalytic triads with atomic-level accuracy.
Nat.Chem.Biol., 10, 2014
1SV5
DownloadVisualize
BU of 1sv5 by Molmil
CRYSTAL STRUCTURE OF K103N MUTANT HIV-1 REVERSE TRANSCRIPTASE (RT) IN COMPLEX WITH JANSSEN-R165335
Descriptor: 4-({6-AMINO-5-BROMO-2-[(4-CYANOPHENYL)AMINO]PYRIMIDIN-4-YL}OXY)-3,5-DIMETHYLBENZONITRILE, Reverse Transcriptase
Authors:Das, K, Arnold, E.
Deposit date:2004-03-27
Release date:2004-05-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Roles of Conformational and Positional Adaptability in Structure-Based Design of TMC125-R165335 (Etravirine) and Related Non-nucleoside Reverse Transcriptase Inhibitors That Are Highly Potent and Effective against Wild-Type and Drug-Resistant HIV-1 Variants
J.Med.Chem., 47, 2004
4N9M
DownloadVisualize
BU of 4n9m by Molmil
Joint neutron/x-ray structure of urate oxidase in complex with 8-hydroxyxanthine
Descriptor: 8-hydroxy-3,9-dihydro-1H-purine-2,6-dione, CHLORIDE ION, SODIUM ION, ...
Authors:Oksanen, E, Blakeley, M.P, Budayova-Spano, M.
Deposit date:2013-10-21
Release date:2014-02-05
Last modified:2018-06-13
Method:NEUTRON DIFFRACTION (2.023 Å), X-RAY DIFFRACTION
Cite:The neutron structure of urate oxidase resolves a long-standing mechanistic conundrum and reveals unexpected changes in protonation.
Plos One, 9, 2014
4DWB
DownloadVisualize
BU of 4dwb by Molmil
Crystal structure of Trypanosoma cruzi farnesyl diphosphate synthase in complex with [2-(n-pentylamino)ethane-1,1-diyl]bisphosphonic acid and Mg2+
Descriptor: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE, ACETATE ION, Farnesyl pyrophosphate synthase, ...
Authors:Aripirala, S, Amzel, L.M, Gabelli, S.B.
Deposit date:2012-02-24
Release date:2013-01-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Design, synthesis, calorimetry, and crystallographic analysis of 2-alkylaminoethyl-1,1-bisphosphonates as inhibitors of Trypanosoma cruzi farnesyl diphosphate synthase.
J.Med.Chem., 55, 2012
3GWU
DownloadVisualize
BU of 3gwu by Molmil
Leucine transporter LeuT in complex with sertraline
Descriptor: (1S,4S)-4-(3,4-dichlorophenyl)-N-methyl-1,2,3,4-tetrahydronaphthalen-1-amine, LEUCINE, SODIUM ION, ...
Authors:Zhou, Z, Zhen, J, Karpowich, N.K, Law, C.J, Reith, M.E.A, Wang, D.N.
Deposit date:2009-04-01
Release date:2009-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Antidepressant specificity of serotonin transporter suggested by three LeuT-SSRI structures.
Nat.Struct.Mol.Biol., 16, 2009
3GTD
DownloadVisualize
BU of 3gtd by Molmil
2.4 Angstrom crystal structure of fumarate hydratase from Rickettsia prowazekii
Descriptor: Fumarate hydratase class II, MALONATE ION, SODIUM ION
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2009-03-27
Release date:2009-07-14
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of fumarate hydratase from Rickettsia prowazekii, the agent of typhus and suspected relative of the mitochondria.
Acta Crystallogr.,Sect.F, 67, 2011
4NLU
DownloadVisualize
BU of 4nlu by Molmil
Poliovirus Polymerase - G289A Loop Mutant
Descriptor: ACETIC ACID, PENTAETHYLENE GLYCOL, RNA-directed RNA polymerase 3D-POL, ...
Authors:Sholders, A.J, Peersen, O.B.
Deposit date:2013-11-14
Release date:2014-01-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Distinct conformations of a putative translocation element in poliovirus polymerase.
J.Mol.Biol., 426, 2014
4DJA
DownloadVisualize
BU of 4dja by Molmil
Crystal structure of a prokaryotic (6-4) photolyase PhrB from Agrobacterium Tumefaciens with an Fe-S cluster and a 6,7-dimethyl-8-ribityllumazine antenna chromophore at 1.45A resolution
Descriptor: 1-deoxy-1-(6,7-dimethyl-2,4-dioxo-3,4-dihydropteridin-8(2H)-yl)-D-ribitol, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Scheerer, P, Zhang, F, Oberpichler, I, Lamparter, T, Krauss, N.
Deposit date:2012-02-01
Release date:2013-04-17
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Crystal structure of a prokaryotic (6-4) photolyase with an Fe-S cluster and a 6,7-dimethyl-8-ribityllumazine antenna chromophore.
Proc.Natl.Acad.Sci.USA, 110, 2013
4NLS
DownloadVisualize
BU of 4nls by Molmil
Poliovirus Polymerase - S288A Loop Mutant
Descriptor: ACETIC ACID, PENTAETHYLENE GLYCOL, RNA-directed RNA polymerase 3D-POL, ...
Authors:Sholders, A.J, Peersen, O.B.
Deposit date:2013-11-14
Release date:2014-01-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Distinct conformations of a putative translocation element in poliovirus polymerase.
J.Mol.Biol., 426, 2014
3NJO
DownloadVisualize
BU of 3njo by Molmil
X-ray crystal structure of the Pyr1-pyrabactin A complex
Descriptor: 4-bromo-N-(pyridin-2-ylmethyl)naphthalene-1-sulfonamide, Abscisic acid receptor PYR1, CHLORIDE ION, ...
Authors:Burgie, E.S, Bingman, C.A, Phillips Jr, G.N, Peterson, F.C, Volkman, B.F, Cutler, S.R, Jensen, D.R, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2010-06-17
Release date:2010-08-18
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.473 Å)
Cite:Structural basis for selective activation of ABA receptors.
Nat.Struct.Mol.Biol., 17, 2010

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon