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8WHA
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Structure of DDM1-nucleosome complex in the ADP-BeFx state with DDM1 bound to SHL2 and SHL-2
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent DNA helicase DDM1, BERYLLIUM TRIFLUORIDE ION, ...
Authors:Liu, Y, Zhang, Z, Du, J.
Deposit date:2023-09-22
Release date:2024-04-17
Method:ELECTRON MICROSCOPY (4.05 Å)
Cite:Molecular basis of chromatin remodelling by DDM1 involved in plant DNA methylation.
Nat.Plants, 10, 2024
8WH5
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BU of 8wh5 by Molmil
Structure of DDM1-nucleosome complex in the apo state
Descriptor: ATP-dependent DNA helicase DDM1, DNA (antisense strand), DNA (sense strand), ...
Authors:Liu, Y, Zhang, Z, Du, J.
Deposit date:2023-09-22
Release date:2024-04-17
Method:ELECTRON MICROSCOPY (3.58 Å)
Cite:Molecular basis of chromatin remodelling by DDM1 involved in plant DNA methylation.
Nat.Plants, 10, 2024
8WH8
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BU of 8wh8 by Molmil
Structure of DDM1-nucleosome complex in ADP state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent DNA helicase DDM1, DNA (antisense strand), ...
Authors:Liu, Y, Zhang, Z, Du, J.
Deposit date:2023-09-22
Release date:2024-04-17
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Molecular basis of chromatin remodelling by DDM1 involved in plant DNA methylation.
Nat.Plants, 10, 2024
9C66
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BU of 9c66 by Molmil
Structure of the Mena EVH1 domain bound to the polyproline segment of PTP1B
Descriptor: 1,2-ETHANEDIOL, Protein enabled homolog, SULFATE ION, ...
Authors:LaComb, L, Fedorov, E, Bonanno, J.B, Almo, S.C, Ghosh, A.
Deposit date:2024-06-07
Release date:2024-08-28
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Insights into the Interaction Landscape of the EVH1 Domain of Mena.
Biochemistry, 63, 2024
1WPA
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BU of 1wpa by Molmil
1.5 Angstrom crystal structure of human occludin fragment 413-522
Descriptor: Occludin
Authors:Li, Y, Lavie, A, Fanning, A.S, Anderson, J.M.
Deposit date:2004-09-01
Release date:2005-09-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of the conserved cytoplasmic C-terminal domain of occludin: identification of the ZO-1 binding surface.
J.Mol.Biol., 352, 2005
1WYM
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BU of 1wym by Molmil
Solution structure of the CH domain of human transgelin-2
Descriptor: Transgelin-2
Authors:Tomizawa, T, Kigawa, T, Koshiba, S, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-02-15
Release date:2005-08-15
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the CH domain of human transgelin-2
To be Published
1WF8
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BU of 1wf8 by Molmil
Solution structure of the PDZ domain of Spinophilin/NeurabinII protein
Descriptor: Neurabin-I
Authors:Qin, X, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-26
Release date:2005-06-07
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the PDZ domain of Spinophilin/NeurabinII protein
To be Published
6YSY
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BU of 6ysy by Molmil
Skeletal Myosin bound to MPH-220, MgADP-VO4
Descriptor: (9~{S})-5-methyl-12-(4-morpholin-4-ylphenyl)-9-oxidanyl-4-thia-2,12-diazatricyclo[7.3.0.0^{3,7}]dodeca-1,3(7),5-trien-8-one, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Canon, L, Kikuti, C.M, Gyimesi, M, Malnasi-Csizmadia, A, Houdusse, A.
Deposit date:2020-04-23
Release date:2021-03-03
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.246 Å)
Cite:Single Residue Variation in Skeletal Muscle Myosin Enables Direct and Selective Drug Targeting for Spasticity and Muscle Stiffness.
Cell, 183, 2020
7T3A
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BU of 7t3a by Molmil
GATOR1-RAG-RAGULATOR - Inhibitory Complex
Descriptor: GATOR complex protein DEPDC5, GATOR complex protein NPRL2, GATOR complex protein NPRL3, ...
Authors:Egri, S.B, Shen, K.
Deposit date:2021-12-07
Release date:2022-04-06
Last modified:2022-06-01
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Cryo-EM structures of the human GATOR1-Rag-Ragulator complex reveal a spatial-constraint regulated GAP mechanism.
Mol.Cell, 82, 2022
7T3B
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BU of 7t3b by Molmil
GATOR1-RAG-RAGULATOR - GAP Complex
Descriptor: ALUMINUM FLUORIDE, GATOR complex protein DEPDC5, GATOR complex protein NPRL2, ...
Authors:Egri, S.B, Shen, K.
Deposit date:2021-12-07
Release date:2022-04-06
Last modified:2022-06-01
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Cryo-EM structures of the human GATOR1-Rag-Ragulator complex reveal a spatial-constraint regulated GAP mechanism.
Mol.Cell, 82, 2022
6WQ1
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BU of 6wq1 by Molmil
Eukaryotic LanCL2 protein
Descriptor: LanC-like protein 2, ZINC ION
Authors:Nair, S.K, Garg, N.
Deposit date:2020-04-28
Release date:2021-05-05
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.295 Å)
Cite:LanCLs add glutathione to dehydroamino acids generated at phosphorylated sites in the proteome.
Cell, 184, 2021
1E6H
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BU of 1e6h by Molmil
A-SPECTRIN SH3 DOMAIN A11V, M25I, V44I, V58L MUTANTS
Descriptor: SPECTRIN ALPHA CHAIN
Authors:Vega, M.C, Serrano, L.
Deposit date:2000-08-17
Release date:2002-05-23
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Conformational Strain in the Hydrophobic Core and its Implications for Protein Folding and Design
Nat.Struct.Biol., 9, 2002
6X3A
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BU of 6x3a by Molmil
Crystal structure of the FN4-FN6 domains of human PTPRD
Descriptor: GLYCEROL, Receptor-type tyrosine-protein phosphatase delta
Authors:Bouyain, S, Kawakami, J.E.
Deposit date:2020-05-21
Release date:2021-05-26
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Complex protein interactions mediate Drosophila Lar function in muscle tissue.
Plos One, 17, 2022
6X39
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BU of 6x39 by Molmil
Crystal structure of the FN5 domain of Mouse Lar
Descriptor: Receptor-type tyrosine-protein phosphatase F, sorbitol
Authors:Bouyain, S, Kawakami, J.E.
Deposit date:2020-05-21
Release date:2021-05-26
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Complex protein interactions mediate Drosophila Lar function in muscle tissue.
Plos One, 17, 2022
6X38
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BU of 6x38 by Molmil
Crystal structure of the FN5 domain of Drosophila Lar
Descriptor: Tyrosine-protein phosphatase Lar, ZINC ION
Authors:Bouyain, S, Kawakami, J.E.
Deposit date:2020-05-21
Release date:2021-05-26
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Complex protein interactions mediate Drosophila Lar function in muscle tissue.
Plos One, 17, 2022
1K58
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BU of 1k58 by Molmil
Crystal Structure of Human Angiogenin Variant D116H
Descriptor: Angiogenin
Authors:Leonidas, D.D, Shapiro, R, Subbarao, G.V, Russo, A, Acharya, K.R.
Deposit date:2001-10-10
Release date:2002-03-20
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystallographic studies on the role of the C-terminal segment of human angiogenin in defining enzymatic potency.
Biochemistry, 41, 2002
6XJX
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BU of 6xjx by Molmil
MCU holocomplex in Low-calcium blocking state
Descriptor: Calcium uniporter protein, mitochondrial, Calcium uptake protein 1, ...
Authors:Wang, Y, Jiang, Y.
Deposit date:2020-06-24
Release date:2020-09-09
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Structural insights into the Ca 2+ -dependent gating of the human mitochondrial calcium uniporter.
Elife, 9, 2020
6XVM
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BU of 6xvm by Molmil
Crystal structure of c-Src SH3 domain without ATCUN motif: monomer 2
Descriptor: GLYCEROL, Proto-oncogene tyrosine-protein kinase Src
Authors:Camara-Artigas, A, Plaza-Garrido, M.
Deposit date:2020-01-22
Release date:2020-04-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (0.9 Å)
Cite:The effect of an engineered ATCUN motif on the structure and biophysical properties of the SH3 domain of c-Src tyrosine kinase.
J.Biol.Inorg.Chem., 25, 2020
6XR4
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BU of 6xr4 by Molmil
Integrative in situ structure of Parkinsons disease-linked human LRRK2
Descriptor: Leucine-rich repeat serine/threonine-protein kinase 2
Authors:Villa, E, Lasker, K, Audagnotto, M.
Deposit date:2020-07-10
Release date:2020-08-19
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (14 Å)
Cite:The In Situ Structure of Parkinson's Disease-Linked LRRK2.
Cell, 182, 2020
6XVO
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BU of 6xvo by Molmil
Crystal structure of the intertwined dimer of the c-Src SH3 domain without ATCUN motif
Descriptor: DI(HYDROXYETHYL)ETHER, Proto-oncogene tyrosine-protein kinase Src, TRIETHYLENE GLYCOL
Authors:Camara-Artigas, A, Plaza-Garrido, M.
Deposit date:2020-01-22
Release date:2020-04-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The effect of an engineered ATCUN motif on the structure and biophysical properties of the SH3 domain of c-Src tyrosine kinase.
J.Biol.Inorg.Chem., 25, 2020
6XX5
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BU of 6xx5 by Molmil
Crystal structure of the c-Src SH3 domain H122R-Q128K mutant in complex with Ni(II) at pH 7.5 co-crystallized with methyl beta-cyclodextrin
Descriptor: Cyclic 2,3-di-O-methyl-alpha-D-glucopyranose-(1-4)-2-O-methyl-alpha-D-glucopyranose-(1-4)-2,6-di-O-methyl-alpha-D-glucopyranose-(1-4)-2-O-methyl-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-3-O-methyl-alpha-D-glucopyranose, NICKEL (II) ION, Proto-oncogene tyrosine-protein kinase Src
Authors:Camara-Artigas, A.
Deposit date:2020-01-26
Release date:2020-05-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:The effect of an engineered ATCUN motif on the structure and biophysical properties of the SH3 domain of c-Src tyrosine kinase.
J.Biol.Inorg.Chem., 25, 2020
6XX2
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BU of 6xx2 by Molmil
Crystal structure of the c-Src SH3 domain H122R-Q128K mutant in complex with Cu(II) at pH 7.5 co-crystallized with methyl beta-cyclodextrin
Descriptor: COPPER (II) ION, Cyclic 2,3-di-O-methyl-alpha-D-glucopyranose-(1-4)-2-O-methyl-alpha-D-glucopyranose-(1-4)-2,6-di-O-methyl-alpha-D-glucopyranose-(1-4)-2-O-methyl-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-3-O-methyl-alpha-D-glucopyranose, Proto-oncogene tyrosine-protein kinase Src
Authors:Camara-Artigas, A.
Deposit date:2020-01-26
Release date:2020-04-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:The effect of an engineered ATCUN motif on the structure and biophysical properties of the SH3 domain of c-Src tyrosine kinase.
J.Biol.Inorg.Chem., 25, 2020
1LB1
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BU of 1lb1 by Molmil
Crystal Structure of the Dbl and Pleckstrin homology domains of Dbs in complex with RhoA
Descriptor: Guanine nucleotide exchange factor DBS, Transforming protein RhoA
Authors:Snyder, J.T, Worthylake, D.K, Rossman, K.L, Betts, L, Pruitt, W.M, Siderovski, D.P, Der, C.J, Sondek, J.
Deposit date:2002-04-01
Release date:2002-05-29
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Structural basis for the selective activation of Rho GTPases by Dbl exchange factors.
Nat.Struct.Biol., 9, 2002
1LKJ
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BU of 1lkj by Molmil
NMR Structure of Apo Calmodulin from Yeast Saccharomyces cerevisiae
Descriptor: Calmodulin
Authors:Ishida, H, Nakashima, K, Kumaki, Y, Nakata, M, Hikichi, K, Yazawa, M.
Deposit date:2002-04-25
Release date:2003-04-29
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:The solution structure of apocalmodulin from Saccharomyces cerevisiae implies a mechanism for its unique Ca2+ binding property.
Biochemistry, 41, 2002
6XU6
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BU of 6xu6 by Molmil
Drosophila melanogaster Testis 80S ribosome
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 2S ribosomal RNA, ...
Authors:Hopes, T, Agapiou, M, Norris, K, McCarthy, C.G.P, OConnell, M.J, Fontana, J, Aspden, J.L.
Deposit date:2020-01-17
Release date:2021-07-28
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Ribosome heterogeneity in Drosophila melanogaster gonads through paralog-switching.
Nucleic Acids Res., 50, 2022

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PDB entries from 2024-11-13

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