PDB: 926 resultsInfo pagesStatus searchChemie searchBIRD

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7R6Q	State E2 nucleolar 60S ribosome biogenesis intermediate - Foot region model Descriptor: 25S rRNA, 5.8S rRNA, 60S ribosomal protein L13-A, ... Authors: Cruz, V.E, Sekulski, K, Peddada, N, Erzberger, J.P. Deposit date: 2021-06-23 Release date: 2022-11-09 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (2.98 Å) Cite: Sequence-specific remodeling of a topologically complex RNP substrate by Spb4. Nat.Struct.Mol.Biol., 29, 2022
7PCV	Crystal structure of RBM5 RRM1-zinc finger Descriptor: RNA-binding protein 5, ZINC ION Authors: Soni, K, Jagtap, P.K.A, Sattler, M. Deposit date: 2021-08-04 Release date: 2022-08-17 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.42 Å) Cite: Structural basis for specific RNA recognition by the alternative splicing factor RBM5. Nat Commun, 14, 2023
7S7B	Human Nuclear exosome targeting (NEXT) complex homodimer bound to RNA (substrate 1) Descriptor: Exosome RNA helicase MTR4, RNA (46-MER), RNA-binding protein 7, ... Authors: Puno, M.R, Lima, C.D. Deposit date: 2021-09-15 Release date: 2022-06-15 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (4.06 Å) Cite: Structural basis for RNA surveillance by the human nuclear exosome targeting (NEXT) complex. Cell, 185, 2022
7S7C	Human Nuclear Exosome Targeting (NEXT) complex bound to RNA (substrate 2) Descriptor: Exosome RNA helicase MTR4, RNA (30-MER), RNA-binding protein 7, ... Authors: Puno, M.R, Lima, C.D. Deposit date: 2021-09-15 Release date: 2022-06-15 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.62 Å) Cite: Structural basis for RNA surveillance by the human nuclear exosome targeting (NEXT) complex. Cell, 185, 2022
2VON	Crystal structure of N-terminal domains of Human La protein complexed with RNA oligomer AUAAUUU Descriptor: 5'-R(*AP*UP*AP*AP*UP*UP*UP)-3', LUPUS LA PROTEIN Authors: Kotik-Kogan, O, Valentine, E.R, Sanfelice, D, Conte, M.R, Curry, S. Deposit date: 2008-02-19 Release date: 2008-05-06 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural Analysis Reveals Conformational Plasticity in the Recognition of RNA 3' Ends by the Human La Protein. Structure, 16, 2008
8I9T	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1 Descriptor: 60S ribosomal protein L12-like protein, 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, ... Authors: Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. Deposit date: 2023-02-07 Release date: 2023-05-17 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023
8I9P	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16 Descriptor: 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, 60S ribosomal protein L16-like protein, ... Authors: Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. Deposit date: 2023-02-07 Release date: 2023-05-17 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3 Å) Cite: Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023
8I9Z	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4 Descriptor: 60S ribosomal protein L12-like protein, 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, ... Authors: Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. Deposit date: 2023-02-07 Release date: 2023-05-17 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023
8I9X	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1 Descriptor: 60S ribosomal protein L12-like protein, 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, ... Authors: Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. Deposit date: 2023-02-07 Release date: 2023-05-17 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023
8IA0	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6 Descriptor: 60S ribosomal protein L12-like protein, 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, ... Authors: Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. Deposit date: 2023-02-07 Release date: 2023-05-17 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023
8I9R	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP Descriptor: 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, 60S ribosomal protein L16-like protein, ... Authors: Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. Deposit date: 2023-02-07 Release date: 2023-05-17 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023
8I9V	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2 Descriptor: 60S ribosomal protein L12-like protein, 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, ... Authors: Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. Deposit date: 2023-02-07 Release date: 2023-05-17 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023
8I9W	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3 Descriptor: 60S ribosomal protein L12-like protein, 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, ... Authors: Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. Deposit date: 2023-02-07 Release date: 2023-05-17 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023
8I9Y	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2 Descriptor: 60S ribosomal protein L12-like protein, 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, ... Authors: Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. Deposit date: 2023-02-07 Release date: 2023-05-17 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023
8IDF	Crystal structure of human TUT1 complexed with U6 snRNA Descriptor: RNA (53-MER), Speckle targeted PIP5K1A-regulated poly(A) polymerase, ZINC ION Authors: Yamashita, S, Tomita, K. Deposit date: 2023-02-13 Release date: 2023-08-09 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (3.7 Å) Cite: Mechanism of U6 snRNA oligouridylation by human TUT1. Nat Commun, 14, 2023
8IPX	human nuclear pre-60S ribosomal particle - State C' Descriptor: 28S rRNA, 5.8S rRNA, 5S RNA, ... Authors: Zhang, Y, Gao, N. Deposit date: 2023-03-15 Release date: 2023-08-09 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Visualizing the nucleoplasmic maturation of human pre-60S ribosomal particles. Cell Res., 33, 2023
8INE	human nuclear pre-60S ribosomal particle - State G' Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Zhang, Y, Gao, N. Deposit date: 2023-03-09 Release date: 2023-08-09 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Visualizing the nucleoplasmic maturation of human pre-60S ribosomal particles. Cell Res., 33, 2023
8IPY	human nuclear pre-60S ribosomal particle - State D' Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Zhang, Y, Gao, N. Deposit date: 2023-03-15 Release date: 2023-08-09 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Visualizing the nucleoplasmic maturation of human pre-60S ribosomal particles. Cell Res., 33, 2023
8INF	human nuclear pre-60S ribosomal particle - State F' Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Zhang, Y, Gao, N. Deposit date: 2023-03-09 Release date: 2023-08-09 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (3 Å) Cite: Visualizing the nucleoplasmic maturation of human pre-60S ribosomal particles. Cell Res., 33, 2023
7ABH	Human pre-Bact-2 spliceosome (SF3b/U2 snRNP portion) Descriptor: Cell division cycle 5-like protein, DNA/RNA-binding protein KIN17, MINX M3 pre-mRNA, ... Authors: Townsend, C, Kastner, B, Leelaram, M.N, Bertram, K, Stark, H, Luehrmann, R. Deposit date: 2020-09-07 Release date: 2020-12-09 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Mechanism of protein-guided folding of the active site U2/U6 RNA during spliceosome activation. Science, 370, 2020
7B0Y	Structure of a transcribing RNA polymerase II-U1 snRNP complex Descriptor: 145-nt RNA, DNA-directed RNA polymerase II subunit D, DNA-directed RNA polymerase II subunit E, ... Authors: Zhang, S, Aibara, S, Vos, S.M, Agafonov, D.E, Luehrmann, R, Cramer, P. Deposit date: 2020-11-23 Release date: 2021-01-13 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Structure of a transcribing RNA polymerase II-U1 snRNP complex. Science, 371, 2021
7A5P	Human C Complex Spliceosome - Medium-resolution PERIPHERY Descriptor: Cell division cycle 5-like protein, Crooked neck-like protein 1, Eukaryotic initiation factor 4A-III, ... Authors: Bertram, K, Kastner, B. Deposit date: 2020-08-21 Release date: 2020-10-14 Method: ELECTRON MICROSCOPY (5 Å) Cite: Structural Insights into the Roles of Metazoan-Specific Splicing Factors in the Human Step 1 Spliceosome. Mol.Cell, 80, 2020
6ZON	SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 1 Descriptor: 18S ribosomal RNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ... Authors: Thoms, M, Buschauer, R, Ameismeier, M, Denk, T, Kratzat, H, Mackens-Kiani, T, Cheng, J, Berninghausen, O, Becker, T, Beckmann, R. Deposit date: 2020-07-07 Release date: 2020-07-29 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural basis for translational shutdown and immune evasion by the Nsp1 protein of SARS-CoV-2. Science, 369, 2020
7C06	Crystal structure of yeast U2AF1 complex bound to 3' splice site RNA, 5'-UAGGU. Descriptor: RNA (5'-R(*U*UP*AP*GP*GP*U)-3'), Splicing factor U2AF 23 kDa subunit, Splicing factor U2AF 59 kDa subunit, ... Authors: Yoshida, H, Park, S.Y, Urano, T, Obayashi, E. Deposit date: 2020-04-30 Release date: 2020-09-30 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.02 Å) Cite: Elucidation of the aberrant 3' splice site selection by cancer-associated mutations on the U2AF1. Nat Commun, 11, 2020
7C08	Crystal structure of S34Y mutant of yeast U2AF1 complex bound to 3' splice site RNA, 5'-UAGGU. Descriptor: RNA (5'-R(*U*UP*AP*GP*GP*U)-3'), Splicing factor U2AF 23 kDa subunit, Splicing factor U2AF 59 kDa subunit, ... Authors: Yoshida, H, Park, S.Y, Urano, T, Obayashi, E. Deposit date: 2020-04-30 Release date: 2020-09-30 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.35 Å) Cite: Elucidation of the aberrant 3' splice site selection by cancer-associated mutations on the U2AF1. Nat Commun, 11, 2020

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