PDB: 113 件ウェブページステータス検索Chemie searchBIRD

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4KAZ	Crystal structure of RNase T in complex with a Y structured DNA 分子名称: DNA (5'-D(*TP*TP*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*CP*C)-3'), MAGNESIUM ION, Ribonuclease T 著者 Hsiao, Y.-Y, Yuan, H.S. 登録日 2013-04-23 公開日 2014-03-05 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways. Plos Biol., 12, 2014
4KB0	Crystal structure of RNase T in complex with a bluge DNA (Two nucleotide insertion CC ) 分子名称: DNA (5'-D(*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*CP*C)-3'), MAGNESIUM ION, Ribonuclease T 著者 Hsiao, Y.-Y, Yuan, H.S. 登録日 2013-04-23 公開日 2014-03-05 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.004 Å) 主引用文献 Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways. Plos Biol., 12, 2014
4CZW	Structure of the Neurospora crassa Pan2 catalytic unit (protease and nuclease domain) 分子名称: PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN2, ZINC ION 著者 Christie, M, Izaurralde, E, Weichenrieder, O. 登録日 2014-04-22 公開日 2014-06-04 最終更新日 2014-07-16 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 An Asymmetric Pan3 Dimer Recruits a Single Pan2 Exonuclease to Mediate Mrna Deadenylation and Decay. Nat.Struct.Mol.Biol., 21, 2014
4Q8H	Structure of the Saccharomyces cerevisiae PAN2 pseudoubiquitin-hydrolase-RNase module 分子名称: MAGNESIUM ION, PAB-dependent poly(A)-specific ribonuclease subunit PAN2 著者 Schaefer, I.B, Conti, E. 登録日 2014-04-27 公開日 2014-06-04 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 The structure of the Pan2-Pan3 core complex reveals cross-talk between deadenylase and pseudokinase. Nat.Struct.Mol.Biol., 21, 2014
4QOZ	Crystal structure of the histone mRNA stem-loop, stem-loop binding protein (phosphorylated), and 3'hExo ternary complex 分子名称: 3'-5' exoribonuclease 1, Histone RNA hairpin-binding protein, histone mRNA stem-loop 著者 Tan, D, Tong, L. 登録日 2014-06-21 公開日 2014-07-23 最終更新日 2014-08-06 実験手法 X-RAY DIFFRACTION (2.304 Å) 主引用文献 Molecular mechanisms for the regulation of histone mRNA stem-loop-binding protein by phosphorylation. Proc.Natl.Acad.Sci.USA, 111, 2014
4XR7	Structure of the Saccharomyces cerevisiae PAN2-PAN3 core complex 分子名称: PAB-dependent poly(A)-specific ribonuclease subunit PAN2, PAB-dependent poly(A)-specific ribonuclease subunit PAN3 著者 Schafer, I.B, Rode, M, Bonneau, F, Schussler, S, Conti, E. 登録日 2015-01-20 公開日 2015-01-28 実験手法 X-RAY DIFFRACTION (3.796 Å) 主引用文献 The structure of the Pan2-Pan3 core complex reveals cross-talk between deadenylase and pseudokinase. Nat. Struct. Mol. Biol., 21, 2014
4RG8	Structural and biochemical studies of a moderately thermophilic Exonuclease I from Methylocaldum szegediense 分子名称: Exonuclease I, MAGNESIUM ION 著者 Fei, L, Tian, S, Moysey, R, Misca, M, Barker, J.J, Smith, M.A, McEwan, P.A, Pilka, E.S, Crawley, L, Evans, T, Sun, D. 登録日 2014-09-29 公開日 2015-02-25 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.12 Å) 主引用文献 Structural and Biochemical Studies of a Moderately Thermophilic Exonuclease I from Methylocaldum szegediense. Plos One, 10, 2015
5CY4	Crystal structure of an oligoribonuclease from Acinetobacter baumannii 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, Oligoribonuclease 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2015-07-30 公開日 2015-08-19 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Crystal structure of an oligoribonuclease from Acinetobacter baumannii To Be Published
5FKU	cryo-EM structure of the E. coli replicative DNA polymerase complex in DNA free state (DNA polymerase III alpha, beta, epsilon, tau complex) 分子名称: DNA POLYMERASE III SUBUNIT ALPHA, DNA POLYMERASE III SUBUNIT BETA, DNA POLYMERASE III SUBUNIT EPSILON, ... 著者 Fernandez-Leiro, R, Conrad, J, Scheres, S.H.W, Lamers, M.H. 登録日 2015-10-20 公開日 2015-11-25 最終更新日 2019-05-08 実験手法 ELECTRON MICROSCOPY (8.34 Å) 主引用文献 cryo-EM structures of theE. colireplicative DNA polymerase reveal its dynamic interactions with the DNA sliding clamp, exonuclease andtau. Elife, 4, 2015
5FKV	cryo-EM structure of the E. coli replicative DNA polymerase complex bound to DNA (DNA polymerase III alpha, beta, epsilon, tau complex) 分子名称: DNA POLYMERASE III BETA, DNA POLYMERASE III EPSILON, DNA POLYMERASE III SUBUNIT ALPHA, ... 著者 Fernandez-Leiro, R, Conrad, J, Scheres, S.H.W, Lamers, M.H. 登録日 2015-10-20 公開日 2015-11-25 最終更新日 2019-02-27 実験手法 ELECTRON MICROSCOPY (8 Å) 主引用文献 cryo-EM structures of theE. colireplicative DNA polymerase reveal its dynamic interactions with the DNA sliding clamp, exonuclease andtau. Elife, 4, 2015
5FKW	cryo-EM structure of the E. coli replicative DNA polymerase complex bound to DNA (DNA polymerase III alpha, beta, epsilon) 分子名称: DNA POLYMERASE III ALPHA, DNA POLYMERASE III BETA, DNA POLYMERASE III EPSILON, ... 著者 Fernandez-Leiro, R, Conrad, J, Scheres, S.H.W, Lamers, M.H. 登録日 2015-10-20 公開日 2015-11-25 最終更新日 2019-02-27 実験手法 ELECTRON MICROSCOPY (7.3 Å) 主引用文献 cryo-EM structures of theE. colireplicative DNA polymerase reveal its dynamic interactions with the DNA sliding clamp, exonuclease andtau. Elife, 4, 2015
5DK5	Crystal structure of CRN-4-MES complex 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Cell death-related nuclease 4, ISOPROPYL ALCOHOL, ... 著者 Hsiao, Y.-Y, Yuan, H.S. 登録日 2015-09-03 公開日 2016-08-24 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Identification of Inhibitors for the DEDDh Family of Exonucleases and a Unique Inhibition Mechanism by Crystal Structure Analysis of CRN-4 Bound with 2-Morpholin-4-ylethanesulfonate (MES) J.Med.Chem., 59, 2016
5M1S	Cryo-EM structure of the E. coli replicative DNA polymerase-clamp-exonuclase-theta complex bound to DNA in the editing mode 分子名称: DNA Primer Strand, DNA Template Strand, DNA polymerase III subunit alpha, ... 著者 Fernandez-Leiro, R, Conrad, J, Scheres, S.H.W, Lamers, M.H. 登録日 2016-10-10 公開日 2017-01-18 最終更新日 2018-10-24 実験手法 ELECTRON MICROSCOPY (6.7 Å) 主引用文献 Self-correcting mismatches during high-fidelity DNA replication. Nat. Struct. Mol. Biol., 24, 2017
5Z9X	Arabidopsis SMALL RNA DEGRADING NUCLEASE 1 in complex with an RNA substrate 分子名称: MAGNESIUM ION, RNA (5'-R(P*GP*CP*CP*CP*AP*UP*UP*AP*G)-3'), SULFATE ION, ... 著者 Chen, J, Liu, L, You, C, Gu, J, Ruan, W, Zhang, L, Gan, J, Cao, C, Huang, Y, Chen, X, Ma, J. 登録日 2018-02-05 公開日 2018-06-27 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural and biochemical insights into small RNA 3' end trimming by Arabidopsis SDN1. Nat Commun, 9, 2018
6A46	Structure of TREX2 in complex with a nucleotide (dCMP) 分子名称: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE, CALCIUM ION, MAGNESIUM ION, ... 著者 Hsiao, Y.Y. 登録日 2018-06-19 公開日 2018-11-07 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural insights into the duplex DNA processing of TREX2 Nucleic Acids Res., 46, 2018
6A4B	Structure of TREX2 in complex with a duplex DNA with 2 nucleotide 3'-overhang 分子名称: DNA (5'-D(*GP*GP*CP*CP*CP*TP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3'), MAGNESIUM ION, Three prime repair exonuclease 2 著者 Hsiao, Y.Y. 登録日 2018-06-19 公開日 2018-11-07 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural insights into the duplex DNA processing of TREX2 Nucleic Acids Res., 46, 2018
6A47	Structure of TREX2 in complex with a Y structured dsDNA 分子名称: DNA (5'-D(P*CP*CP*AP*GP*GP*CP*CP*CP*TP*CP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3'), MAGNESIUM ION, SODIUM ION, ... 著者 Hsiao, Y.Y. 登録日 2018-06-19 公開日 2018-11-07 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural insights into the duplex DNA processing of TREX2 Nucleic Acids Res., 46, 2018
6A45	Structure of mouse TREX2 分子名称: PHOSPHATE ION, Three prime repair exonuclease 2 著者 Hsiao, Y.Y. 登録日 2018-06-19 公開日 2018-11-07 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.904 Å) 主引用文献 Structural insights into the duplex DNA processing of TREX2 Nucleic Acids Res., 46, 2018
6A4D	pNP-TMP bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H 分子名称: 5'-O-[(S)-hydroxy(4-nitrophenoxy)phosphoryl]thymidine, Oligoribonuclease 著者 Lee, C.W, Park, S, Lee, J.H. 登録日 2018-06-19 公開日 2019-03-13 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.19 Å) 主引用文献 Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H. Sci Rep, 9, 2019
6A4E	Two linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H 分子名称: Oligoribonuclease, RNA (5'-R(P*UP*UP*UP*UP*U)-3') 著者 Lee, C.W, Park, S, Lee, J.H. 登録日 2018-06-19 公開日 2019-03-13 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H. Sci Rep, 9, 2019
6A4A	Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H 分子名称: MAGNESIUM ION, Oligoribonuclease 著者 Lee, C.W, Park, S, Lee, J.H. 登録日 2018-06-19 公開日 2019-03-13 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H. Sci Rep, 9, 2019
6A4F	Separated uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H 分子名称: MANGANESE (II) ION, Oligoribonuclease, URIDINE-5'-MONOPHOSPHATE 著者 Lee, C.W, Park, S, Lee, J.H. 登録日 2018-06-19 公開日 2019-03-13 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.21 Å) 主引用文献 Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H. Sci Rep, 9, 2019
6R9O	Structure of Saccharomyces cerevisiae apo Pan2 pseudoubiquitin hydrolase-RNA exonuclease (UCH-Exo) module in complex with AAGGA RNA 分子名称: AAGGA RNA, PAN2-PAN3 deadenylation complex catalytic subunit PAN2 著者 Tang, T.T.L, Stowell, J.A.W, Hill, C.H, Passmore, L.A. 登録日 2019-04-03 公開日 2019-05-22 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (3.319 Å) 主引用文献 The intrinsic structure of poly(A) RNA determines the specificity of Pan2 and Caf1 deadenylases. Nat.Struct.Mol.Biol., 26, 2019
6R9I	Structure of Saccharomyces cerevisiae apo Pan2 pseudoubiquitin hydrolase-RNA exonuclease (UCH-Exo) module 分子名称: PAN2-PAN3 deadenylation complex catalytic subunit PAN2 著者 Tang, T.T.L, Stowell, J.A.W, Hill, C.H, Passmore, L.A. 登録日 2019-04-03 公開日 2019-05-22 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 The intrinsic structure of poly(A) RNA determines the specificity of Pan2 and Caf1 deadenylases. Nat.Struct.Mol.Biol., 26, 2019
6R9M	Structure of Saccharomyces cerevisiae apo Pan2 pseudoubiquitin hydrolase-RNA exonuclease (UCH-Exo) module in complex with AAGGAA RNA 分子名称: AAGGAA RNA, PAN2-PAN3 deadenylation complex catalytic subunit PAN2 著者 Tang, T.T.L, Stowell, J.A.W, Hill, C.H, Passmore, L.A. 登録日 2019-04-03 公開日 2019-05-22 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (3.329 Å) 主引用文献 The intrinsic structure of poly(A) RNA determines the specificity of Pan2 and Caf1 deadenylases. Nat.Struct.Mol.Biol., 26, 2019

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