9GDG
 
 | | Crystal structure of TRIM24 PHD-BRD in complex with N-(2-(2-(2-acetamidoethoxy)ethoxy)ethyl)-3-(N-(1,3-dimethyl-2-oxo-6-(3-propoxyphenoxy)-2,3-dihydro-1H-benzo[d]imidazol-5-yl)sulfamoyl)benzamide (PEG linker unresolved) | | Descriptor: | N-(2-(2-(2-acetamidoethoxy)ethoxy)ethyl)-3-(N-(1,3-dimethyl-2-oxo-6-(3-propoxyphenoxy)-2,3-dihydro-1H-benzo[d]imidazol-5-yl)sulfamoyl)benzamide, Transcription intermediary factor 1-alpha, ZINC ION | | Authors: | Platt, M.A, Kot, E, Conway, S.J, Koekemoer, L. | | Deposit date: | 2024-08-05 | | Release date: | 2025-08-13 | | Method: | X-RAY DIFFRACTION (1.462 Å) | | Cite: | Crystal structure of TRIM24 PHD-BRD in complex with N-(2-(2-(2-acetamidoethoxy)ethoxy)ethyl)-3-(N-(1,3-dimethyl-2-oxo-6-(3-propoxyphenoxy)-2,3-dihydro-1H-benzo[d]imidazol-5-yl)sulfamoyl)benzamide (PEG linker unresolved)
To Be Published
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9GCG
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7SIR
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9GCZ
 | | XusB lipoprotein bound to ferric enterobactin | | Descriptor: | CITRIC ACID, DIMETHYL SULFOXIDE, DUF4374 domain-containing protein, ... | | Authors: | Silale, A, Mark, H, Basle, A, van den Berg, B. | | Deposit date: | 2024-08-03 | | Release date: | 2025-08-13 | | Last modified: | 2025-09-17 | | Method: | X-RAY DIFFRACTION (1.5 Å) | | Cite: | Structural basis of iron piracy by human gut Bacteroides.
Biorxiv, 2025
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1LV5
 | | Crystal Structure of the Closed Conformation of Bacillus DNA Polymerase I Fragment Bound to DNA and dCTP | | Descriptor: | 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*AP*CP*GP*TP*CP*GP*CP*TP*GP*AP*TP*CP*CP*G)-3', 5'-D(*GP*GP*AP*TP*CP*AP*GP*CP*GP*A)-3', ... | | Authors: | Johnson, S.J, Taylor, J.S, Beese, L.S. | | Deposit date: | 2002-05-24 | | Release date: | 2003-03-25 | | Last modified: | 2024-02-14 | | Method: | X-RAY DIFFRACTION (1.95 Å) | | Cite: | Processive DNA synthesis observed in a polymerase crystal suggests a
mechanism for the prevention of frameshift mutations
Proc.Natl.Acad.Sci.USA, 100, 2003
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9G9U
 | | The structure of XynX, a NIF3 family protein from Geobacillus proteiniphilus T-6 | | Descriptor: | 1,2-ETHANEDIOL, GTP cyclohydrolase 1 type 2 homolog, ZINC ION | | Authors: | Hadad, N, Pomyalov, S, Lavid, N, Shoham, Y, Shoham, G. | | Deposit date: | 2024-07-25 | | Release date: | 2025-08-06 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | The structure of XynX, a NIF3 family protein from Geobacillus proteiniphilus T-6
To Be Published
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7S5H
 | | PCSK9(deltaCRD) in complex with cyclic peptide 35 | | Descriptor: | (2E)-but-2-ene-1,4-diol, Pro-peptide from Proprotein convertase subtilisin/kexin type 9, Proprotein convertase subtilisin/kexin type 9, ... | | Authors: | Orth, P. | | Deposit date: | 2021-09-10 | | Release date: | 2021-11-03 | | Last modified: | 2024-04-24 | | Method: | X-RAY DIFFRACTION (1.272 Å) | | Cite: | A Series of Novel, Highly Potent, and Orally Bioavailable Next-Generation Tricyclic Peptide PCSK9 Inhibitors.
J.Med.Chem., 64, 2021
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1M68
 | | YCDX PROTEIN, TRINUCLEAR ZINC SITE | | Descriptor: | Hypothetical protein ycdX, SULFATE ION, ZINC ION | | Authors: | Teplyakov, A, Obmolova, G, Khil, P.P, Camerini-Otero, R.D, Gilliland, G.L. | | Deposit date: | 2002-07-14 | | Release date: | 2003-04-22 | | Last modified: | 2024-02-14 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Crystal structure of the Escherichia coli YcdX protein reveals a
trinuclear zinc active site
PROTEINS: STRUCT.,FUNCT.,GENET., 51, 2003
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9G8V
 | | StmPr1, Stenotrophomonas maltophilia Protease 1, 36 kDa alkine serine protease | | Descriptor: | Alkaline serine protease, CALCIUM ION, GLYCEROL, ... | | Authors: | Sommer, M, Outzen, L, Negm, A, WIndhorst, S, Weber, W, Betzel, C. | | Deposit date: | 2024-07-24 | | Release date: | 2025-08-06 | | Method: | X-RAY DIFFRACTION (1.637 Å) | | Cite: | Unveiling the structure, function and dynamics of StmPr1 in Stenotrophomonas maltophilia virulence.
Sci Rep, 15, 2025
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1M6F
 | | Strong Binding in the DNA Minor Groove by an Aromatic Diamidine With a Shape That Does Not Match the Curvature of the Groove | | Descriptor: | 3-[C-[N'-(3-CARBAMIMIDOYL-BENZYLIDENIUM)-HYDRAZINO]-[[AMINOMETHYLIDENE]AMINIUM]-IMINOMETHYL]-BENZAMIDINIUM, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION | | Authors: | Nguyen, B, Lee, M.P.H, Hamelberg, D, Joubert, A, Bailly, C, Brun, R, Neidle, S, Wilson, W.D. | | Deposit date: | 2002-07-16 | | Release date: | 2002-11-15 | | Last modified: | 2024-04-03 | | Method: | X-RAY DIFFRACTION (1.78 Å) | | Cite: | Strong Binding in the DNA Minor Groove by an Aromatic Diamidine With a Shape That Does Not Match the Curvature of the Groove
J.Am.Chem.Soc., 124, 2002
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5FX8
 | | Complete structure of manganese lipoxygenase of Gaeumannomyces graminis and partial structure of zonadhesin of Komagataella pastoris | | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... | | Authors: | Chen, Y, Wennman, A, Karkehanadi, S, Engstrom, A, Oliw, E.H. | | Deposit date: | 2016-02-25 | | Release date: | 2016-06-22 | | Last modified: | 2024-10-16 | | Method: | X-RAY DIFFRACTION (2.6 Å) | | Cite: | Crystal Structure of Linoleate 13R-Manganese Lipoxygenase and an Adhesion Protein
J.Lipid Res., 57, 2016
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9G9L
 | | DNA-PK + Polymerase lambda | | Descriptor: | DNA, DNA polymerase lambda, DNA-dependent protein kinase catalytic subunit, ... | | Authors: | Chaplin, A.K, Amin, H, Zahid, S, Hardwick, S.W. | | Deposit date: | 2024-07-25 | | Release date: | 2025-08-06 | | Method: | ELECTRON MICROSCOPY (4.63 Å) | | Cite: | Ku70/80 anchors DNA polymerase Lambda at sites of DNA synapsis during NHEJ
To Be Published
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1LW0
 | | CRYSTAL STRUCTURE OF T215Y MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH NEVIRAPINE | | Descriptor: | 11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE, HIV-1 REVERSE TRANSCRIPTASE, PHOSPHATE ION | | Authors: | Ren, J, Chamberlain, P.P, Nichols, C.E, Douglas, L, Stuart, D.I, Stammers, D.K. | | Deposit date: | 2002-05-30 | | Release date: | 2002-10-30 | | Last modified: | 2024-10-30 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | Crystal structures of Zidovudine- or Lamivudine-resistant human immunodeficiency virus type 1 reverse transcriptases containing mutations at codons 41, 184, and 215.
J.Virol., 76, 2002
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2PAD
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9GRG
 | | StmPr1, Stenotrophomonas maltophilia Protease 1, 36 kDa alkine serine protease in complex with PMSF | | Descriptor: | Alkaline serine protease, CALCIUM ION, GLYCEROL, ... | | Authors: | Sommer, M, Outzen, L, Negm, A, Windhorst, S, Weber, W, Betzel, C. | | Deposit date: | 2024-09-11 | | Release date: | 2025-08-06 | | Method: | X-RAY DIFFRACTION (1.89 Å) | | Cite: | Unveiling the structure, function and dynamics of StmPr1 in Stenotrophomonas maltophilia virulence.
Sci Rep, 15, 2025
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1LWH
 | | CRYSTAL STRUCTURE OF T. MARITIMA 4-ALPHA-GLUCANOTRANSFERASE | | Descriptor: | 4-alpha-glucanotransferase, CALCIUM ION | | Authors: | Roujeinikova, A, Raasch, C, Sedelnikova, S, Liebl, W, Rice, D.W. | | Deposit date: | 2002-05-31 | | Release date: | 2002-07-03 | | Last modified: | 2024-02-14 | | Method: | X-RAY DIFFRACTION (2.6 Å) | | Cite: | CRYSTAL STRUCTURE OF THERMOTOGA MARITIMA 4-ALPHA-GLUCANOTRANSFERASE AND ITS ACARBOSE COMPLEX:
IMPLICATIONS FOR SUBSTRATE SPECIFICITY AND CATALYSIS
J.Mol.Biol., 321, 2002
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1M6J
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7SKB
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1M6Z
 | | Crystal structure of reduced recombinant cytochrome c4 from Pseudomonas stutzeri | | Descriptor: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Cytochrome c4, GLYCEROL, ... | | Authors: | Noergaard, A, Harris, P, Larsen, S, Christensen, H.E.M. | | Deposit date: | 2002-07-18 | | Release date: | 2003-09-16 | | Last modified: | 2024-10-16 | | Method: | X-RAY DIFFRACTION (1.35 Å) | | Cite: | Structural comparison of recombinant Pseudomonas stutzeri cytochrome c4 in two oxidation states
To be Published
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9GBT
 | | De novo designed retro-aldolase 13 (RAD13) | | Descriptor: | ACETATE ION, GLYCEROL, Retroaldolase 13 (RAD13), ... | | Authors: | Bijelic, A, Stoll, D, Chakatok, M, Tripp, A, Braun, M, Oberdorfer, G. | | Deposit date: | 2024-07-31 | | Release date: | 2025-08-13 | | Method: | X-RAY DIFFRACTION (2.43 Å) | | Cite: | Computational design of highly active de novo enzymes
To Be Published
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1M7K
 | | Solution Structure of the SODD BAG Domain | | Descriptor: | Silencer of Death Domains | | Authors: | Brockmann, C, Leitner, D, Labudde, D, Diehl, A, Sievert, V, Buessow, K, Oschkinat, H. | | Deposit date: | 2002-07-22 | | Release date: | 2002-08-07 | | Last modified: | 2024-05-29 | | Method: | SOLUTION NMR | | Cite: | The solution structure of the SODD BAG domain reveals additional electrostatic interactions in the HSP70 complexes of SODD subfamily BAG domains
Febs Lett., 558, 2004
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1M9L
 | | Relaxation-based Refined Structure Of Chlamydomonas Outer Arm Dynein Light Chain 1 | | Descriptor: | Outer Arm Dynein Light Chain 1 | | Authors: | Wu, H.W, Maciejewski, M.W, Marintchev, A, Benashski, S.E, Mullen, G.P, King, S.M. | | Deposit date: | 2002-07-29 | | Release date: | 2003-03-04 | | Last modified: | 2024-05-22 | | Method: | SOLUTION NMR | | Cite: | Relaxation-based structure refinement and backbone molecular dynamics of the
Dynein motor domain-associated light chain
Biochemistry, 42, 2003
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7SEV
 | | Crystal structure of E coli contaminant protein YadF co-purified with a plant protein | | Descriptor: | Carbonic anhydrase 2, POTASSIUM ION, ZINC ION | | Authors: | Chai, L, Zhu, P, Chai, J, Pang, C, Andi, B, McsWeeney, S, Shanklin, J, Liu, Q. | | Deposit date: | 2021-10-01 | | Release date: | 2021-11-03 | | Last modified: | 2024-04-03 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | AlphaFold Protein Structure Database for Sequence-Independent Molecular Replacement
Crystals, 11, 2021
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1LX8
 | | Regulation of directionality in bacteriophage lambda site-specific recombination: structure of the Xis protein | | Descriptor: | Excisionase | | Authors: | Sam, M.D, Papagiannis, C, Connolly, K.M, Corselli, L, Iwahara, J, Lee, J, Phillips, M, Wojciak, J.M, Johnson, R.C, Clubb, R.T. | | Deposit date: | 2002-06-04 | | Release date: | 2003-06-10 | | Last modified: | 2024-05-22 | | Method: | SOLUTION NMR | | Cite: | Regulation of directionality in bacteriophage lambda site-specific recombination: structure of the Xis protein
J.Mol.Biol., 324, 2002
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9GD7
 | | DNA-PK Ku80 mediated dimer bound to DNA polymerase Lambda and DNA ligase 4/XRCC4 | | Descriptor: | DNA, DNA ligase 4, DNA polymerase lambda, ... | | Authors: | Chaplin, A.K, Amin, H, Zahid, S, Hardwick, S.W. | | Deposit date: | 2024-08-05 | | Release date: | 2025-08-13 | | Method: | ELECTRON MICROSCOPY (4.25 Å) | | Cite: | Ku70/80 anchors DNA polymerase Lambda at sites of DNA synapsis during NHEJ
To Be Published
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