PDB: 8865 resultsInfo pagesStatus searchChemie searchBIRD

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8WAX	De novo transcribing complex 14 (TC14), the early elongation complex with Pol II positioned 14nt downstream of TSS Descriptor: Alpha-amanitin, DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit F, ... Authors: Chen, X, Liu, W, Wang, Q, Wang, X, Ren, Y, Qu, X, Li, W, Xu, Y. Deposit date: 2023-09-08 Release date: 2023-12-06 Last modified: 2024-01-03 Method: ELECTRON MICROSCOPY (2.75 Å) Cite: Structural visualization of transcription initiation in action. Science, 382, 2023
7Q5B	Cryo-EM structure of Ty3 retrotransposon targeting a TFIIIB-bound tRNA gene Descriptor: DNA (19-MER), DNA (31-MER), DNA (34-MER), ... Authors: Abascal-Palacios, G, Jochem, L, Pla-Prats, C, Beuron, F, Vannini, A. Deposit date: 2021-11-03 Release date: 2022-01-26 Method: ELECTRON MICROSCOPY (3.98 Å) Cite: Structural basis of Ty3 retrotransposon integration at RNA Polymerase III-transcribed genes. Nat Commun, 12, 2021
6P5J	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2) Descriptor: 18S rRNA, 28S rRNA, 5.8S rRNA, ... Authors: Acosta-Reyes, F.J, Neupane, R, Frank, J, Fernandez, I.S. Deposit date: 2019-05-30 Release date: 2019-09-18 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: The Israeli acute paralysis virus IRES captures host ribosomes by mimicking a ribosomal state with hybrid tRNAs. Embo J., 38, 2019
6P5I	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1) Descriptor: 18S rRNA, 28S rRNA, 5.8S rRNA, ... Authors: Acosta-Reyes, F.J, Neupane, R, Frank, J, Fernandez, I.S. Deposit date: 2019-05-30 Release date: 2019-09-18 Last modified: 2020-02-26 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: The Israeli acute paralysis virus IRES captures host ribosomes by mimicking a ribosomal state with hybrid tRNAs. Embo J., 38, 2019
6P5N	Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1 Descriptor: 18S rRNA, 28S rRNA, 5.8S rRNA, ... Authors: Acosta-Reyes, F.J, Neupane, R, Frank, J, Fernandez, I.S. Deposit date: 2019-05-30 Release date: 2019-09-25 Last modified: 2020-01-08 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: The Israeli acute paralysis virus IRES captures host ribosomes by mimicking a ribosomal state with hybrid tRNAs. Embo J., 38, 2019
6P5K	Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3) Descriptor: 18S rRNA, 28S rRNA, 5.8S rRNA, ... Authors: Acosta-Reyes, F.J, Neupane, R, Frank, J, Fernandez, I.S. Deposit date: 2019-05-30 Release date: 2019-09-18 Last modified: 2020-01-08 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: The Israeli acute paralysis virus IRES captures host ribosomes by mimicking a ribosomal state with hybrid tRNAs. Embo J., 38, 2019
7QTL	Influenza A/H7N9 polymerase elongation complex Descriptor: 3' vRNA, 5' vRNA, 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, ... Authors: Cusack, S, Kouba, T. Deposit date: 2022-01-14 Release date: 2022-12-28 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (2.48 Å) Cite: Direct observation of backtracking by influenza A and B polymerases upon consecutive incorporation of the nucleoside analog T1106. Cell Rep, 42, 2023
7R0E	Early transcription elongation state of influenza A/H7N9 polymerase backtracked due to double incoproation of nucleotide analogue T1106 and with singly incoporated T1106 at the +1 position Descriptor: 3' vRNA, 5' vRNA, MAGNESIUM ION, ... Authors: Cusack, S, Kouba, T. Deposit date: 2022-02-01 Release date: 2022-12-28 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (2.51 Å) Cite: Direct observation of backtracking by influenza A and B polymerases upon consecutive incorporation of the nucleoside analog T1106. Cell Rep, 42, 2023
7R1F	Early transcription elongation state of influenza B polymerase backtracked due to double incoproation of nucleotide analogue T1106 Descriptor: 3' vRNA, 5' vRNA, MAGNESIUM ION, ... Authors: Cusack, S, Kouba, T. Deposit date: 2022-02-02 Release date: 2022-12-28 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (2.58 Å) Cite: Direct observation of backtracking by influenza A and B polymerases upon consecutive incorporation of the nucleoside analog T1106. Cell Rep, 42, 2023
7TQL	CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B. Descriptor: 18S ribosomal RNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ... Authors: Lapointe, C.P, Grosely, R, Sokabe, M, Alvarado, C, Wang, J, Montabana, E, Villa, N, Shin, B, Dever, T, Fraser, C, Fernandez, I.S, Puglisi, J.D. Deposit date: 2022-01-26 Release date: 2022-04-27 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: eIF5B and eIF1A reorient initiator tRNA to allow ribosomal subunit joining. Nature, 607, 2022
8A40	Structure of mammalian Pol II-TFIIS elongation complex Descriptor: DNA-directed RNA polymerase II subunit E, DNA-directed RNA polymerase II subunit RPB11-a, DNA-directed RNA polymerase II subunit RPB3, ... Authors: Farnung, L, Ochmann, M, Garg, G, Vos, S.M, Cramer, P. Deposit date: 2022-06-09 Release date: 2023-08-23 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structure of a backtracked hexasomal intermediate of nucleosome transcription. Mol.Cell, 82, 2022
6OVY	X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter variant -1C Descriptor: DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*TP*CP*TP*GP*AP*TP*G)-3'), DNA (5'-D(P*CP*AP*TP*CP*AP*GP*AP*GP*CP*CP*CP*CP*AP*AP*A)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Shin, Y, Murakami, K.S. Deposit date: 2019-05-08 Release date: 2019-07-24 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.999 Å) Cite: Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase. Nucleic Acids Res., 48, 2020
6OW3	X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter variant -1T Descriptor: DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*GP*AP*TP*CP*TP*GP*AP*TP*GP*C)-3'), DNA (5'-D(P*GP*CP*AP*TP*CP*AP*GP*AP*GP*CP*CP*CP*TP*AP*AP*A)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Shin, Y, Murakami, K.S. Deposit date: 2019-05-09 Release date: 2019-07-24 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.766 Å) Cite: Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase. Nucleic Acids Res., 48, 2020
8XMC	Post-translocated Pol IV transcription elongation complex Descriptor: DNA-directed RNA polymerase IV subunit 1, DNA-directed RNA polymerase IV subunit 7, DNA-directed RNA polymerases II and IV subunit 5A, ... Authors: Huang, K, Fang, C.L, Zhang, Y. Deposit date: 2023-12-27 Release date: 2024-07-24 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Transcription of the Plant RNA polymerase IV is prone to backtracking To Be Published
8XMB	NTP-bound Pol IV transcription elongation complex Descriptor: DNA-directed RNA polymerase IV subunit 1, DNA-directed RNA polymerase IV subunit 7, DNA-directed RNA polymerases II and IV subunit 5A, ... Authors: Huang, K, Fang, C.L, Zhang, Y. Deposit date: 2023-12-27 Release date: 2024-07-24 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Transcription of the Plant RNA polymerase IV is prone to backtracking To Be Published
6OY7	X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 7 min Descriptor: DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*TP*CP*TP*GP*AP*TP*GP*CP*AP*GP*G)-3'), DNA (5'-D(P*CP*CP*TP*GP*CP*AP*TP*CP*AP*GP*AP*GP*CP*CP*CP*AP*AP*AP*A)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Shin, Y, Murakami, K.S. Deposit date: 2019-05-14 Release date: 2019-07-24 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.04 Å) Cite: Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase. Nucleic Acids Res., 48, 2020
8BDR	Early transcription elongation state of influenza B/Mem polymerase backtracked due to double incoproation of nucleotide analogue T1106 and with singly incoporated T1106 at the U +1 position Descriptor: 3' vRNA, 5' vRNA, MAGNESIUM ION, ... Authors: Cusack, S, Kouba, T. Deposit date: 2022-10-19 Release date: 2022-12-28 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Direct observation of backtracking by influenza A and B polymerases upon consecutive incorporation of the nucleoside analog T1106. Cell Rep, 42, 2023
8BE0	Early transcription elongation state of influenza B/Mem polymerase backtracked due to double incoproation of nucleotide analogue T1106 and with singly incoporated T1106 at the C +1 position Descriptor: 3' vRNA, 5' vRNA, MAGNESIUM ION, ... Authors: Cusack, S, Kouba, T. Deposit date: 2022-10-20 Release date: 2022-12-28 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (2.34 Å) Cite: Direct observation of backtracking by influenza A and B polymerases upon consecutive incorporation of the nucleoside analog T1106. Cell Rep, 42, 2023
8BEK	Early transcription elongation state of influenza A/H7N9 backtracked polymerase with singly incoporated T1106 at the U +1 position Descriptor: 3' vRNA, 5' vRNA, MAGNESIUM ION, ... Authors: Cusack, S, Kouba, T. Deposit date: 2022-10-21 Release date: 2022-12-28 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (2.86 Å) Cite: Direct observation of backtracking by influenza A and B polymerases upon consecutive incorporation of the nucleoside analog T1106. Cell Rep, 42, 2023
8BF5	Early transcription elongation state of influenza A/H7N9 polymerase stalled with incoming GTP analogue Descriptor: 3' vRNA, 5' vRNA, MAGNESIUM ION, ... Authors: Cusack, S, Kouba, T. Deposit date: 2022-10-24 Release date: 2022-12-28 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (2.96 Å) Cite: Direct observation of backtracking by influenza A and B polymerases upon consecutive incorporation of the nucleoside analog T1106. Cell Rep, 42, 2023
6OVR	X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter variant -1G Descriptor: DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*CP*TP*GP*AP*TP*GP*CP*AP*GP*G)-3'), DNA (5'-D(P*GP*GP*TP*GP*CP*AP*TP*CP*AP*GP*AP*GP*CP*CP*CP*GP*AP*AP*A)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Shin, Y, Murakami, K.S. Deposit date: 2019-05-08 Release date: 2019-07-24 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.843 Å) Cite: Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase. Nucleic Acids Res., 48, 2020
6OY6	X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 5 min Descriptor: DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*GP*AP*TP*CP*TP*GP*AP*TP*GP*CP*AP*GP*G)-3'), DNA (5'-D(P*CP*CP*TP*GP*CP*AP*TP*CP*AP*GP*AP*GP*CP*CP*CP*AP*AP*AP*A)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Shin, Y, Murakami, K.S. Deposit date: 2019-05-14 Release date: 2019-06-19 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.096 Å) Cite: Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase. Nucleic Acids Res., 48, 2020
8XMD	Pre-translocated Pol IV transcription elongation complex Descriptor: DNA-directed RNA polymerase IV subunit 1, DNA-directed RNA polymerase IV subunit 7, DNA-directed RNA polymerases II and IV subunit 5A, ... Authors: Huang, K, Fang, C.L, Zhang, Y. Deposit date: 2023-12-27 Release date: 2024-07-24 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Transcription of the Plant RNA polymerase IV is prone to backtracking To Be Published
8XME	Backtracked Pol IV transcription elongation complex Descriptor: DNA-directed RNA polymerase IV subunit 1, DNA-directed RNA polymerase IV subunit 7, DNA-directed RNA polymerases II and IV subunit 5A, ... Authors: Huang, K, Fang, C.L, Zhang, Y. Deposit date: 2023-12-27 Release date: 2024-07-24 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Transcription of the Plant RNA polymerase IV is prone to backtracking To Be Published
7ZPL	Symmetric dimer of influenza A/H7N9 polymerase bound to 5' vRNA hook Descriptor: 5' vRNA, MAGNESIUM ION, Polymerase acidic protein, ... Authors: Cusack, S, Kouba, T. Deposit date: 2022-04-27 Release date: 2022-12-28 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.12 Å) Cite: Direct observation of backtracking by influenza A and B polymerases upon consecutive incorporation of the nucleoside analog T1106. Cell Rep, 42, 2023

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