PDB: 11109 resultsInfo pagesStatus searchChemie searchBIRD

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2PE4	Structure of Human Hyaluronidase 1, a Hyaluronan Hydrolyzing Enzyme Involved in Tumor Growth and Angiogenesis Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, GLYCEROL, ... Authors: Chao, K.L, Herzberg, O. Deposit date: 2007-04-02 Release date: 2007-06-12 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure of Human Hyaluronidase-1, a Hyaluronan Hydrolyzing Enzyme Involved in Tumor Growth and Angiogenesis Biochemistry, 46, 2007
4ZOH	Crystal structure of glyceraldehyde oxidoreductase Descriptor: ACETIC ACID, DI(HYDROXYETHYL)ETHER, FE2/S2 (INORGANIC) CLUSTER, ... Authors: Nishimasu, H, Fushinobu, S, Wakagi, T. Deposit date: 2015-05-06 Release date: 2016-02-03 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Archaeal Mo-Containing Glyceraldehyde Oxidoreductase Isozymes Exhibit Diverse Substrate Specificities through Unique Subunit Assemblies. Plos One, 11, 2016
3H3D	Drosophila Pumilio RNA binding domain (Puf domain) Descriptor: Maternal protein pumilio Authors: Edwards, T.A, Aggarwal, A.K, Wharton, R.P. Deposit date: 2009-04-16 Release date: 2009-04-28 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure of Pumilio reveals similarity between RNA and peptide binding motifs. Cell(Cambridge,Mass.), 105, 2001
5ZJT	Structure of AbdB/Exd complex bound to a 'Black14' DNA sequence Descriptor: DNA (5'-D(*GP*CP*AP*TP*GP*AP*TP*AP*AP*AP*TP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*AP*TP*TP*TP*AP*TP*CP*AP*TP*GP*C)-3'), Homeobox protein abdominal-B, ... Authors: Zeiske, T, Baburajendran, N, Kaczynska, A, Mann, R, Honig, B, Shapiro, L, Palmer, A.G. Deposit date: 2018-03-22 Release date: 2018-08-29 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Intrinsic DNA Shape Accounts for Affinity Differences between Hox-Cofactor Binding Sites. Cell Rep, 24, 2018
5ZJS	Structure of AbdB/Exd complex bound to a 'Blue14' DNA sequence Descriptor: DNA (5'-D(*GP*CP*AP*TP*GP*AP*TP*TP*AP*AP*TP*GP*AP*C)-3'), DNA (5'-D(*GP*TP*CP*AP*TP*TP*AP*AP*TP*CP*AP*TP*GP*C)-3'), Homeobox protein abdominal-B, ... Authors: Baburajendran, N, Zeiske, T, Kaczynska, A, Mann, R, Honig, B, Shapiro, L, Palmer, A.G. Deposit date: 2018-03-22 Release date: 2018-08-29 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.896 Å) Cite: Intrinsic DNA Shape Accounts for Affinity Differences between Hox-Cofactor Binding Sites. Cell Rep, 24, 2018
4XGC	Crystal structure of the eukaryotic origin recognition complex Descriptor: CHLORIDE ION, Origin recognition complex subunit 1, Origin recognition complex subunit 2, ... Authors: Bleichert, F, Botchan, M.R, Berger, J.M. Deposit date: 2014-12-30 Release date: 2015-04-01 Last modified: 2019-12-04 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Crystal structure of the eukaryotic origin recognition complex. Nature, 519, 2015
4XB7	Crystal structure of Dscam1 isoform 4.4, N-terminal four Ig domains Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Down syndrome cell adhesion molecule, isoform 4.4, ... Authors: Chen, Q, Yu, Y, Li, S.A, Cheng, L. Deposit date: 2014-12-16 Release date: 2015-12-16 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (4.004 Å) Cite: Structural basis of Dscam1 homodimerization: Insights into context constraint for protein recognition Sci Adv, 2, 2016
4JBK	Molecular basis for abrogation of activation of pro-inflammatory cytokines Descriptor: DNA (5'-D(P*GP*GP*AP*AP*TP*TP*AP*TP*AP*AP*TP*TP*CP*C)-3'), Interferon-activable protein 202 Authors: Ru, H, Ni, X, Crowley, C, Zhao, L, Ding, W, Hung, L.-W, Shaw, N, Cheng, G, Liu, Z.-J. Deposit date: 2013-02-19 Release date: 2013-06-26 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.963 Å) Cite: Structural basis for termination of AIM2-mediated signaling by p202 Cell Res., 23, 2013
4YVJ	Crystal Structure of H. influenzae TrmD in complex with sinefungin and tRNA variant (G36U) Descriptor: SINEFUNGIN, tRNA, tRNA (guanine-N(1)-)-methyltransferase Authors: Yoshida, K, Ito, T, Yokoyama, S. Deposit date: 2015-03-20 Release date: 2015-07-15 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structural basis for methyl-donor-dependent and sequence-specific binding to tRNA substrates by knotted methyltransferase TrmD. Proc.Natl.Acad.Sci.USA, 112, 2015
1KRR	Galactoside Acetyltransferase in Complex with Acetyl-Coenzyme A Descriptor: ACETYL COENZYME *A, GALACTOSIDE O-ACETYLTRANSFERASE Authors: Wang, X.-G, Olsen, L.R, Roderick, S.L. Deposit date: 2002-01-10 Release date: 2002-04-10 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structure of the lac operon galactoside acetyltransferase. Structure, 10, 2002
1KRV	Galactoside Acetyltransferase in Complex with CoA and PNP-beta-Gal Descriptor: 4-nitrophenyl beta-D-galactopyranoside, COENZYME A, GALACTOSIDE O-ACETYLTRANSFERASE Authors: Wang, X.-G, Olsen, L.R, Roderick, S.L. Deposit date: 2002-01-10 Release date: 2002-04-10 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structure of the lac operon galactoside acetyltransferase. Structure, 10, 2002
5VKQ	Structure of a mechanotransduction ion channel Drosophila NOMPC in nanodisc Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE, No mechanoreceptor potential C isoform L Authors: Jin, P, Bulkley, D, Guo, Y, Zhang, W, Guo, Z, Huynh, W, Wu, S, Meltzer, S, Chen, T, Jan, L.Y, Jan, Y.-N, Cheng, Y. Deposit date: 2017-04-22 Release date: 2017-06-28 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3.55 Å) Cite: Electron cryo-microscopy structure of the mechanotransduction channel NOMPC. Nature, 547, 2017
5W76	Crystal Structure of Reconstructed Bacterial Elongation Factor Node 168 Descriptor: Ancestral Elogation Factor N153, DI(HYDROXYETHYL)ETHER, GUANOSINE-5'-DIPHOSPHATE, ... Authors: Ortlund, E.A. Deposit date: 2017-06-19 Release date: 2018-04-25 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.152 Å) Cite: Structural and Dynamics Comparison of Thermostability in Ancient, Modern, and Consensus Elongation Factor Tus. Structure, 26, 2018
5H7V	Structure of full-length extracellular domain of HAI-1 at pH 4.6 Descriptor: Kunitz-type protease inhibitor 1 Authors: Liu, M, Huang, M. Deposit date: 2016-11-21 Release date: 2017-03-29 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3.82 Å) Cite: The crystal structure of a multidomain protease inhibitor (HAI-1) reveals the mechanism of its auto-inhibition J. Biol. Chem., 292, 2017
5WJE	Crystal structure of Naa80 bound to a bisubstrate analogue Descriptor: Actin N-terminus peptide, CARBOXYMETHYL COENZYME *A, CG8481, ... Authors: Goris, M, Magin, R.S, Marmorstein, R, Arnesen, T. Deposit date: 2017-07-21 Release date: 2018-03-28 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.765 Å) Cite: Structural determinants and cellular environment define processed actin as the sole substrate of the N-terminal acetyltransferase NAA80. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5H9B	Drosophila CaMKII-wt in complex with a fragment of the Eag potassium channel and Mg2+/AMPPN Descriptor: AMP PHOSPHORAMIDATE, Calcium/calmodulin-dependent protein kinase II, isoform C, ... Authors: Castro-Rodrigues, A.F, Morais-Cabral, J.H. Deposit date: 2015-12-27 Release date: 2017-01-11 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.25 Å) Cite: The Interaction between the Drosophila EAG Potassium Channel and the Protein Kinase CaMKII Involves an Extensive Interface at the Active Site of the Kinase. J.Mol.Biol., 430, 2018
3GPX	Sequence-matched MutM Interrogation Complex 4 (IC4) Descriptor: DNA (5'-D(*A*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*GP*AP*GP*TP*CP*TP*AP*CP*C)-3'), DNA glycosylase, ... Authors: Spong, M.C, Qi, Y, Verdine, G.L. Deposit date: 2009-03-23 Release date: 2009-11-10 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme. Nature, 462, 2009
3GQ5	Sequence-matched MutM Interrogation Complex 5 (IC5) Descriptor: DNA (5'-D(*A*GP*GP*TP*AP*GP*AP*CP*CP*CP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*T*CP*CP*GP*GP*GP*TP*CP*TP*AP*CP*C)-3'), DNA glycosylase, ... Authors: Qi, Y, Verdine, G.L. Deposit date: 2009-03-23 Release date: 2009-11-10 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Encounter and extrusion of an intrahelical lesion by a DNA repair enzyme. Nature, 462, 2009
5Z4J	Structure of Tailor in complex with U4 RNA Descriptor: RNA (5'-R(*UP*UP*UP*U)-3'), Terminal uridylyltransferase Tailor Authors: Cheng, L, Li, F, Jiang, Y, Yu, H, Xie, C, Shi, Y, Gong, Q. Deposit date: 2018-01-11 Release date: 2018-10-31 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.82 Å) Cite: Structural insights into a unique preference for 3' terminal guanine of mirtron in Drosophila TUTase tailor. Nucleic Acids Res., 47, 2019
5HLE	Structural basis of backwards motion in kinesin-14: minus-end directed nKn664 in the ADP state Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Protein claret segregational,Minus-end kinesin-1/kinesin-14,Protein claret segregational Authors: Nitta, R. Deposit date: 2016-01-14 Release date: 2017-01-25 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Backwards motion in kinesin-14 requires neck-mimic to control a neck-helix swing. To Be Published
5Y3J	Crystal structure of horse TLR9 in complex with two DNAs (CpG DNA and TCGCAC DNA) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DNA (5'-D(*AP*GP*GP*CP*GP*TP*TP*TP*TP*T)-3'), ... Authors: Ohto, U, Ishida, H, Shimizu, T. Deposit date: 2017-07-29 Release date: 2018-04-18 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.81 Å) Cite: Toll-like Receptor 9 Contains Two DNA Binding Sites that Function Cooperatively to Promote Receptor Dimerization and Activation Immunity, 48, 2018
5Y3K	Crystal structure of horse TLR9 in complex with two DNAs (CpG DNA and GCGCAC DNA) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DNA (5'-D(*AP*GP*GP*CP*GP*TP*TP*TP*TP*T)-3'), ... Authors: Ohto, U, Shimizu, T. Deposit date: 2017-07-29 Release date: 2018-04-18 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Toll-like Receptor 9 Contains Two DNA Binding Sites that Function Cooperatively to Promote Receptor Dimerization and Activation Immunity, 48, 2018
4I0P	HLA-DO in complex with HLA-DM Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, GLYCEROL, ... Authors: Guce, A.I, Mortimer, S.E, Stern, L.J. Deposit date: 2012-11-18 Release date: 2012-12-26 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.2 Å) Cite: HLA-DO acts as a substrate mimic to inhibit HLA-DM by a competitive mechanism. Nat.Struct.Mol.Biol., 20, 2013
5X2P	Crystal structure of the medaka fish taste receptor T1r2a-T1r3 ligand binding domains in complex with L-glutamate Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... Authors: Nuemket, N, Yasui, N, Atsumi, N, Yamashita, A. Deposit date: 2017-02-02 Release date: 2017-05-24 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.608 Å) Cite: Structural basis for perception of diverse chemical substances by T1r taste receptors Nat Commun, 8, 2017
2Q86	Structure of the mouse invariant NKT cell receptor Valpha14 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Valpha14 TCR, Vbeta8.2, ... Authors: Zajonc, D.M. Deposit date: 2007-06-08 Release date: 2008-04-01 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Crystal Structures of Mouse CD1d-iGb3 Complex and its Cognate Valpha14 T Cell Receptor Suggest a Model for Dual Recognition of Foreign and Self Glycolipids. J.Mol.Biol., 377, 2008

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