Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8CZQ
DownloadVisualize
BU of 8czq by Molmil
The crystal structure of MtbTOP1 in complex with both G- and T-segments
Descriptor: ACETATE ION, DNA (5'-D(*CP*TP*TP*CP*CP*GP*CP*TP*TP*GP*AP*C)-3'), DNA topoisomerase 1, ...
Authors:Tan, K, Tse-Dinh, Y.-C.
Deposit date:2022-05-25
Release date:2022-12-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.78 Å)
Cite:The interaction between transport-segment DNA and topoisomerase IA-crystal structure of MtbTOP1 in complex with both G- and T-segments.
Nucleic Acids Res., 51, 2023
8W5Z
DownloadVisualize
BU of 8w5z by Molmil
Crystal structure of tick tyrosylprotein sulfotransferase reveals the activation mechanism of tick anticoagulant protein madanin
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, ADENOSINE-3'-5'-DIPHOSPHATE, ...
Authors:Yoshimura, M, Teramoto, T, Nishimoto, E, Kakuta, Y.
Deposit date:2023-08-28
Release date:2024-04-10
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of tick tyrosylprotein sulfotransferase reveals the activation mechanism of the tick anticoagulant protein madanin.
J.Biol.Chem., 300, 2024
4PZW
DownloadVisualize
BU of 4pzw by Molmil
Synthesis, Characterization and PK/PD Studies of a Series of Spirocyclic Pyranochromene BACE1 Inhibitors
Descriptor: (4R,4a'S,10a'S)-7'-(5-chloropyridin-3-yl)-3',4',4a',10a'-tetrahydro-1'H-spiro[1,3-oxazole-4,5'-pyrano[3,4-b]chromen]-2-amine, Beta-secretase 1, NICKEL (II) ION
Authors:Vigers, G.P.A.
Deposit date:2014-03-31
Release date:2014-05-14
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Synthesis, characterization, and PK/PD studies of a series of spirocyclic pyranochromene BACE1 inhibitors.
Bioorg.Med.Chem.Lett., 24, 2014
9J11
DownloadVisualize
BU of 9j11 by Molmil
Structure of mEos3.2 in the green fluorescent state
Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, Green to red photoconvertible GFP-like protein EosFP
Authors:Zheng, S.P, Shi, X.R.
Deposit date:2024-08-03
Release date:2025-04-16
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural basis for the fast maturation of pcStar, a photoconvertible fluorescent protein.
Acta Crystallogr D Struct Biol, 81, 2025
8ZE9
DownloadVisualize
BU of 8ze9 by Molmil
ESTS1 phthalate ester degrading esterase from Sulfobacillus acidophilus S154A mutant in complex with diethylhexyl phthalate at 2.4A
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, Triacylglycerol lipase, ...
Authors:Verma, S, Choudhary, S, Kumar, P.
Deposit date:2024-05-04
Release date:2024-12-25
Last modified:2025-02-19
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Mechanistic and structural insights into EstS1 esterase: A potent broad-spectrum phthalate diester degrading enzyme.
Structure, 33, 2025
6XRX
DownloadVisualize
BU of 6xrx by Molmil
Crystal structure of the mosquito protein AZ1 as an MBP fusion
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Maltose/maltodextrin-binding periplasmic protein, ...
Authors:Pedersen, L.C, Mueller, G.A, Foo, A.C.Y.
Deposit date:2020-07-14
Release date:2021-03-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:The mosquito protein AEG12 displays both cytolytic and antiviral properties via a common lipid transfer mechanism.
Proc.Natl.Acad.Sci.USA, 118, 2021
5B4D
DownloadVisualize
BU of 5b4d by Molmil
Crystal structure of H10N mutant of LpxH
Descriptor: GLYCEROL, UDP-2,3-diacylglucosamine hydrolase
Authors:Okada, C, Wakabayashi, H, Yao, M, Tanaka, I.
Deposit date:2016-04-03
Release date:2016-09-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structures of the UDP-diacylglucosamine pyrophosphohydrase LpxH from Pseudomonas aeruginosa
Sci Rep, 6, 2016
9JK1
DownloadVisualize
BU of 9jk1 by Molmil
Crystal structure of CDK12/Cyclin K in complex with covalent inhibitor YJZ5118
Descriptor: 1,2-ETHANEDIOL, Cyclin-K, Cyclin-dependent kinase 12, ...
Authors:Huang, W.X, Zhang, P.J, Yang, J.Z, Ding, K.
Deposit date:2024-09-14
Release date:2025-05-07
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Discovery of YJZ5118 : A Potent and Highly Selective Irreversible CDK12/13 Inhibitor with Synergistic Effects in Combination with Akt Inhibition.
J.Med.Chem., 68, 2025
4XIL
DownloadVisualize
BU of 4xil by Molmil
Crystal structure of the NanB sialidase from streptococcus pneumoniae in complex with Optactin at pH 7.4 in PBS with MPD as the cryoprotectant
Descriptor: (1s,3R,4S)-1-[(cyclohexylamino)methyl]-3,4-dihydroxycyclopentanesulfonic acid, Sialidase B
Authors:Brear, P.
Deposit date:2015-01-07
Release date:2016-01-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:`The Hunt for Serendipitous Allosteric Sites: Discovery of a novel allosteric inhibitor of the bacterial sialidase NanB
To be published
6G2N
DownloadVisualize
BU of 6g2n by Molmil
Crystal structure of human cytosolic 5'(3')-deoxyribonucleotidase in complex with the inhibitor PB-PAU
Descriptor: 5'(3')-deoxyribonucleotidase, cytosolic type, MAGNESIUM ION, ...
Authors:Pachl, P, Rezacova, P, Brynda, J.
Deposit date:2018-03-23
Release date:2018-07-11
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure-based optimization of bisphosphonate nucleoside inhibitors of human 5'(3')-deoxyribonucleotidases
Eur.J.Org.Chem., 2018
7TNI
DownloadVisualize
BU of 7tni by Molmil
Structure of EC12 Y1392W variant of BT-R1 from Manduca sexta, a Cry1A toxin binding domain
Descriptor: Cadherin, MAGNESIUM ION
Authors:Fisher, A.J, Wilcox, X.E.
Deposit date:2022-01-21
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Functional and Structural Analysis of the Toxin-Binding Site of the Cadherin G-Protein-Coupled Receptor, BT-R 1 , for Cry1A Toxins of Bacillus thuringiensis .
Biochemistry, 61, 2022
4Q2P
DownloadVisualize
BU of 4q2p by Molmil
NHERF3 PDZ2 in Complex with a Phage-Derived Peptide
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Na(+)/H(+) exchange regulatory cofactor NHE-RF3
Authors:Appleton, B.A, Wiesmann, C.
Deposit date:2014-04-09
Release date:2014-09-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:A structural portrait of the PDZ domain family.
J.Mol.Biol., 426, 2014
5IQ6
DownloadVisualize
BU of 5iq6 by Molmil
Crystal structure of Dengue virus serotype 3 RNA dependent RNA polymerase bound to HeE1-2Tyr, a new pyridobenzothizole inhibitor
Descriptor: N-[8-(cyclohexyloxy)-1-oxo-2-phenyl-1H-pyrido[2,1-b][1,3]benzothiazole-4-carbonyl]-L-tyrosine, RNA dependent RNA polymerase, ZINC ION
Authors:Tarantino, D, Mastrangelo, E, Milani, M.
Deposit date:2016-03-10
Release date:2016-10-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Targeting flavivirus RNA dependent RNA polymerase through a pyridobenzothiazole inhibitor.
Antiviral Res., 134, 2016
5GM3
DownloadVisualize
BU of 5gm3 by Molmil
Crystal structure of FI-CMCase from Aspergillus aculeatus F-50
Descriptor: CACODYLATE ION, Endoglucanase-1, ZINC ION
Authors:Huang, J.W, Liu, W.D, Zheng, Y.Y, Chen, C.C, Guo, R.T.
Deposit date:2016-07-12
Release date:2017-05-17
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Crystal structure and genetic modifications of FI-CMCase from Aspergillus aculeatus F-50
Biochem. Biophys. Res. Commun., 478, 2016
6G07
DownloadVisualize
BU of 6g07 by Molmil
RORGT (264-518;C455S) IN COMPLEX WITH INVERSE AGONIST "CPD-9" AND RIP140 PEPTIDE AT 1.66A
Descriptor: Nuclear receptor ROR-gamma, Nuclear receptor-interacting protein 1, ~{N}-[5-chloranyl-6-[(1~{S})-1-phenylethoxy]pyridin-3-yl]-2-(4-ethylsulfonylphenyl)ethanamide
Authors:Kallen, J.
Deposit date:2018-03-16
Release date:2018-07-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Optimizing a Weakly Binding Fragment into a Potent ROR gamma t Inverse Agonist with Efficacy in an in Vivo Inflammation Model.
J. Med. Chem., 61, 2018
4XMA
DownloadVisualize
BU of 4xma by Molmil
Crystal structure of the K499G mutant of NanB sialidase from streptococcus pneumoniae in complex with Optactin
Descriptor: (1s,3R,4S)-1-[(cyclohexylamino)methyl]-3,4-dihydroxycyclopentanesulfonic acid, DIMETHYL SULFOXIDE, Sialidase B
Authors:Brear, P.
Deposit date:2015-01-14
Release date:2016-02-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:`The Hunt for Serendipitous Allosteric Sites: Discovery of a novel allosteric inhibitor of the bacterial sialidase NanB
To be published
7L1S
DownloadVisualize
BU of 7l1s by Molmil
PS3 F1-ATPase Pi-bound Dwell
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ATP synthase subunit alpha, ...
Authors:Sobti, M, Ueno, H, Noji, H, Stewart, A.G.
Deposit date:2020-12-15
Release date:2021-07-21
Last modified:2025-05-28
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:The six steps of the complete F 1 -ATPase rotary catalytic cycle.
Nat Commun, 12, 2021
7L1Q
DownloadVisualize
BU of 7l1q by Molmil
PS3 F1-ATPase Binding/TS Dwell
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ...
Authors:Sobti, M, Ueno, H, Noji, H, Stewart, A.G.
Deposit date:2020-12-15
Release date:2021-07-21
Last modified:2025-06-04
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:The six steps of the complete F 1 -ATPase rotary catalytic cycle.
Nat Commun, 12, 2021
7KRI
DownloadVisualize
BU of 7kri by Molmil
FR6-bound SARS-CoV-2 Nsp9 RNA-replicase
Descriptor: 1,3-dimethyl-1H-pyrrolo[3,4-d]pyrimidine-2,4(3H,6H)-dione, MALONATE ION, Non-structural protein 9, ...
Authors:Littler, D.R, Gully, B.S, Rossjohn, J.
Deposit date:2020-11-20
Release date:2021-07-21
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Binding of a pyrimidine RNA base-mimic to SARS-CoV-2 nonstructural protein 9.
J.Biol.Chem., 297, 2021
7L1R
DownloadVisualize
BU of 7l1r by Molmil
PS3 F1-ATPase Hydrolysis Dwell
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ...
Authors:Sobti, M, Ueno, H, Noji, H, Stewart, A.G.
Deposit date:2020-12-15
Release date:2021-07-21
Last modified:2025-05-14
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:The six steps of the complete F 1 -ATPase rotary catalytic cycle.
Nat Commun, 12, 2021
5XXL
DownloadVisualize
BU of 5xxl by Molmil
Crystal structure of GH3 beta-glucosidase from Bacteroides thetaiotaomicron
Descriptor: DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, Periplasmic beta-glucosidase, ...
Authors:Nakajima, M, Ishiguro, R, Tanaka, N, Abe, K, Maeda, T, Miyanaga, A, Takahash, Y, Sugimoto, N, Nakai, H, Taguchi, H.
Deposit date:2017-07-04
Release date:2017-12-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Function and structure relationships of a beta-1,2-glucooligosaccharide-degrading beta-glucosidase.
FEBS Lett., 591, 2017
5BSX
DownloadVisualize
BU of 5bsx by Molmil
Crystal structure of GII.10 P domain in complex with disinfectant Puregreen24
Descriptor: 1,2-ETHANEDIOL, CITRATE ANION, Capsid protein
Authors:Koromyslova, A.D, Hansman, G.S.
Deposit date:2015-06-02
Release date:2015-09-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Treatment of norovirus particles with citrate.
Virology, 485, 2015
5LRI
DownloadVisualize
BU of 5lri by Molmil
PHOTOSYNTHETIC REACTION CENTER MUTANT WITH GLUL212 REPLACED WITH TRP (CHAIN L, EL212W)
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CARDIOLIPIN, ...
Authors:Fyfe, P.K, Jones, M.R.
Deposit date:2016-08-19
Release date:2016-11-09
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:On the mechanism of ubiquinone mediated photocurrent generation by a reaction center based photocathode.
Biochim.Biophys.Acta, 1857, 2016
5G22
DownloadVisualize
BU of 5g22 by Molmil
Plasmodium vivax N-myristoyltransferase in complex with a quinoline inhibitor (compound 26)
Descriptor: 2-oxopentadecyl-CoA, CHLORIDE ION, ETHYL 4-[(2-CYANOETHYL)SULFANYL]-6-{[6-(PIPERAZIN-1-YL), ...
Authors:Goncalves, V, Brannigan, J.A, Laporte, A, Bell, A.S, Roberts, S.M, Wilkinson, A.J, Leatherbarrow, R.J, Tate, E.W.
Deposit date:2016-04-06
Release date:2017-02-15
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Structure-guided optimization of quinoline inhibitors of Plasmodium N-myristoyltransferase.
Medchemcomm, 8, 2017
5GIS
DownloadVisualize
BU of 5gis by Molmil
Crystal structure of a Fab fragment with its ligand peptide
Descriptor: Heavy chain of Fab fragment, Light chain of Fab fragment, SULFATE ION, ...
Authors:Kitago, Y, Kaneko, K.K, Ogasawara, S, Kato, Y, Takagi, J.
Deposit date:2016-06-24
Release date:2016-09-14
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Structural basis for multi-specific peptide recognition by the anti-IDH1/2 monoclonal antibody, MsMab-1.
Biochem. Biophys. Res. Commun., 478, 2016

244693

PDB entries from 2025-11-12

PDB statisticsPDBj update infoContact PDBjnumon