PDB: 1104 resultsInfo pagesStatus searchChemie searchBIRD

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6IR2	Crystal structure of red fluorescent protein mCherry complexed with the nanobody LaM2 at 1.4 Angstron resolution Descriptor: MCherry fluorescent protein, mCherry's nanobody LaM2 Authors: Ding, Y, Wang, Z.Y, Hu, R.T, Chen, X. Deposit date: 2018-11-09 Release date: 2019-11-13 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.393 Å) Cite: Structural insights into the binding of nanobodies LaM2 and LaM4 to the red fluorescent protein mCherry. Protein Sci., 30, 2021
6IR1	Crystal structure of red fluorescent protein mCherry complexed with the nanobody LaM4 at 1.9 Angstron resolution Descriptor: MCherry fluorescent protein, mCherry's nanobody LaM4 Authors: Ding, Y, Wang, Z.Y, Hu, R.T, Chen, X. Deposit date: 2018-11-09 Release date: 2019-11-13 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.919 Å) Cite: Structural insights into the binding of nanobodies LaM2 and LaM4 to the red fluorescent protein mCherry. Protein Sci., 30, 2021
6HWP	Structure of A3_bGFPD, an artificial bi-domain protein based on two different alphaRep domains : A3 and a GFP binding domain (bGFPD) Descriptor: A3_bGFPD, MALONATE ION, SODIUM ION Authors: Li de la Sierra-Gallay, I, Leger, C. Deposit date: 2018-10-12 Release date: 2018-10-24 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.547 Å) Cite: Ligand-induced conformational switch in an artificial bidomain protein scaffold. Sci Rep, 9, 2019
6HUT	GFP8 - a stabilized variant of cycle-3 GFP Descriptor: Green fluorescent protein Authors: Petek, M, Rangel Pereira, M. Deposit date: 2018-10-09 Release date: 2020-01-22 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.29 Å) Cite: GFP8 - a stabilized variant of cycle-3 GFP To Be Published
6HR1	Crystal structure of the YFPnano fusion protein Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, GLYCEROL, ... Authors: Benoit, R.M. Deposit date: 2018-09-26 Release date: 2020-04-08 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.901 Å) Cite: Chimeric single alpha-helical domains as rigid fusion protein connections for protein nanotechnology and structural biology. Structure, 2021
6HOL	Structure of ATG14 LIR motif bound to GABARAPL1 Descriptor: Beclin 1-associated autophagy-related key regulator, GLYCEROL, Gamma-aminobutyric acid receptor-associated protein-like 1, ... Authors: Mouilleron, S, Birgisdottir, A.B, Bhujbal, Z, Wirth, M, Sjottem, E, Evjen, G, Zhang, W, Lee, R, O'Reilly, N, Tooze, S, Lamark, T, Johansen, T. Deposit date: 2018-09-17 Release date: 2019-02-27 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Members of the autophagy class III phosphatidylinositol 3-kinase complex I interact with GABARAP and GABARAPL1 via LIR motifs. Autophagy, 15, 2019
6HOK	Structure of Beclin1 LIR (S96E) motif bound to GABARAP Descriptor: 1,2-ETHANEDIOL, Beclin-1,Gamma-aminobutyric acid receptor-associated protein Authors: Mouilleron, S, Birgisdottir, A.B, Bhujbal, Z, Wirth, M, Sjottem, E, Evjen, G, Zhang, W, Lee, R, O'Reilly, N, Tooze, S, Lamark, T, Johansen, T. Deposit date: 2018-09-17 Release date: 2019-02-27 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.61 Å) Cite: Members of the autophagy class III phosphatidylinositol 3-kinase complex I interact with GABARAP and GABARAPL1 via LIR motifs. Autophagy, 15, 2019
6HOJ	Structure of Beclin1 LIR motif bound to GABARAP Descriptor: 1,2-ETHANEDIOL, Beclin-1,Gamma-aminobutyric acid receptor-associated protein, SULFATE ION Authors: Mouilleron, S, Birgisdottir, A.B, Bhujbal, Z, Wirth, M, Sjottem, E, Evjen, G, Zhang, W, Lee, R, O'Reilly, N, Tooze, S, Lamark, T, Johansen, T. Deposit date: 2018-09-17 Release date: 2019-02-27 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.51 Å) Cite: Members of the autophagy class III phosphatidylinositol 3-kinase complex I interact with GABARAP and GABARAPL1 via LIR motifs. Autophagy, 15, 2019
6HOI	Structure of Beclin1 LIR motif bound to GABARAPL1 Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Beclin-1, ... Authors: Mouilleron, S, Birgisdottir, A.B, Bhujbal, Z, Wirth, M, Sjottem, E, Evjen, G, Zhang, W, Lee, R, O'Reilly, N, Tooze, S, Lamark, T, Johansen, T. Deposit date: 2018-09-17 Release date: 2019-02-27 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.14 Å) Cite: Members of the autophagy class III phosphatidylinositol 3-kinase complex I interact with GABARAP and GABARAPL1 via LIR motifs. Autophagy, 15, 2019
6HOH	Structure of VPS34 LIR motif (S249E) bound to GABARAP Descriptor: Phosphatidylinositol 3-kinase catalytic subunit type 3,Gamma-aminobutyric acid receptor-associated protein, TRIETHYLENE GLYCOL Authors: Mouilleron, S, Birgisdottir, A.B, Bhujbal, Z, Wirth, M, Sjottem, E, Evjen, G, Zhang, W, Lee, R, O'Reilly, N, Tooze, S, Lamark, T, Johansen, T. Deposit date: 2018-09-17 Release date: 2019-02-27 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Members of the autophagy class III phosphatidylinositol 3-kinase complex I interact with GABARAP and GABARAPL1 via LIR motifs. Autophagy, 15, 2019
6HOG	Structure of VPS34 LIR motif bound to GABARAP Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Phosphatidylinositol 3-kinase catalytic subunit type 3,Gamma-aminobutyric acid receptor-associated protein, ... Authors: Mouilleron, S, Birgisdottir, A.B, Bhujbal, Z, Wirth, M, Sjottem, E, Evjen, G, Zhang, W, Lee, R, O'Reilly, N, Tooze, S, Lamark, T, Johansen, T. Deposit date: 2018-09-17 Release date: 2019-02-27 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.26 Å) Cite: Members of the autophagy class III phosphatidylinositol 3-kinase complex I interact with GABARAP and GABARAPL1 via LIR motifs. Autophagy, 15, 2019
6H01	Crystal structure of a domain-swapped dark-state sfGFP containing the unnatural amino acid ortho-nitrobenzyl-tyrosine (ONBY) at residue 66 Descriptor: Green fluorescent protein Authors: Kesgin-Schaefer, S, Tidow, H. Deposit date: 2018-07-06 Release date: 2019-04-24 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.776 Å) Cite: Crystal structure of a domain-swapped photoactivatable sfGFP variant provides evidence for GFP folding pathway. Febs J., 286, 2019
6GRM	Structure of GFPmut2 crystallized at pH 6 and transferred to pH 9 Descriptor: Green fluorescent protein Authors: Lolli, G, Raboni, S, Pasqualetto, E, Campanini, B, Mozzarelli, A, Bettati, S, Battistutta, R. Deposit date: 2018-06-11 Release date: 2018-12-19 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Insight into GFPmut2 pH Dependence by Single Crystal Microspectrophotometry and X-ray Crystallography. J.Phys.Chem.B, 122, 2018
6GQH	Structure of GFPmut2 crystallized at pH 8.5 and transferred to pH 6 Descriptor: CALCIUM ION, Green fluorescent protein Authors: Pasqualetto, E, Lolli, G, Battistutta, R. Deposit date: 2018-06-07 Release date: 2018-12-19 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Insight into GFPmut2 pH Dependence by Single Crystal Microspectrophotometry and X-ray Crystallography. J.Phys.Chem.B, 122, 2018
6GQG	Structure of GFPmut2 crystallized at pH 8.5 Descriptor: CALCIUM ION, Green fluorescent protein Authors: Pasqualetto, E, Lolli, G, Battistutta, R. Deposit date: 2018-06-07 Release date: 2018-12-19 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.792 Å) Cite: Insight into GFPmut2 pH Dependence by Single Crystal Microspectrophotometry and X-ray Crystallography. J.Phys.Chem.B, 122, 2018
6GP1	Structure of mEos4b in the red long-lived dark state Descriptor: Green to red photoconvertible GFP-like protein EosFP Authors: De Zitter, E, Adam, V, Byrdin, M, Van Meervelt, L, Dedecker, P, Bourgeois, D. Deposit date: 2018-06-04 Release date: 2019-05-22 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.504 Å) Cite: Mechanistic investigation of mEos4b reveals a strategy to reduce track interruptions in sptPALM. Nat.Methods, 16, 2019
6GP0	Structure of mEos4b in the red fluorescent state Descriptor: Green to red photoconvertible GFP-like protein EosFP Authors: De Zitter, E, Adam, V, Byrdin, M, Van Meervelt, L, Dedecker, P, Bourgeois, D. Deposit date: 2018-06-04 Release date: 2019-05-22 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Mechanistic investigation of mEos4b reveals a strategy to reduce track interruptions in sptPALM. Nat.Methods, 16, 2019
6GOZ	Structure of mEos4b in the green long-lived dark state Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... Authors: De Zitter, E, Adam, V, Byrdin, M, Van Meervelt, L, Dedecker, P, Bourgeois, D. Deposit date: 2018-06-04 Release date: 2019-11-13 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.406 Å) Cite: Mechanistic Investigations of Green mEos4b Reveal a Dynamic Long-Lived Dark State. J.Am.Chem.Soc., 2020
6GOY	Structure of mEos4b in the green fluorescent state Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... Authors: De Zitter, E, Adam, V, Byrdin, M, Van Meervelt, L, Dedecker, P, Bourgeois, D. Deposit date: 2018-06-04 Release date: 2019-05-22 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Mechanistic investigation of mEos4b reveals a strategy to reduce track interruptions in sptPALM. Nat.Methods, 16, 2019
6GO9	Structure of GFPmut2 crystallized at pH 6 and transferred to pH 7 Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, Green fluorescent protein Authors: Lolli, G, Raboni, S, Pasqualetto, E, Campanini, B, Mozzarelli, A, Bettati, S, Battistutta, R. Deposit date: 2018-06-01 Release date: 2018-12-19 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.672 Å) Cite: Insight into GFPmut2 pH Dependence by Single Crystal Microspectrophotometry and X-ray Crystallography. J.Phys.Chem.B, 122, 2018
6GO8	Structure of GFPmut2 crystallized at pH 6 Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, Green fluorescent protein Authors: Lolli, G, Raboni, S, Pasqualetto, E, Campanini, B, Mozzarelli, A, Bettati, S, Battistutta, R. Deposit date: 2018-06-01 Release date: 2018-12-19 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.648 Å) Cite: Insight into GFPmut2 pH Dependence by Single Crystal Microspectrophotometry and X-ray Crystallography. J.Phys.Chem.B, 122, 2018
6GEZ	THE STRUCTURE OF TWITCH-2B N532F Descriptor: CALCIUM ION, FORMIC ACID, Green fluorescent protein,Optimized Ratiometric Calcium Sensor,Green fluorescent protein,Green fluorescent protein Authors: Trigo Mourino, P, Paulat, M, Thestrup, T, Griesbeck, O, Griesinger, C, Becker, S. Deposit date: 2018-04-27 Release date: 2019-08-21 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.47 Å) Cite: Dynamic tuning of FRET in a green fluorescent protein biosensor. Sci Adv, 5, 2019
6GEL	The structure of TWITCH-2B Descriptor: CALCIUM ION, FORMIC ACID, GLYCEROL, ... Authors: Trigo Mourino, P, Paulat, M, Thestrup, T, Griesbeck, O, Griesinger, C, Becker, S. Deposit date: 2018-04-26 Release date: 2019-08-21 Last modified: 2019-09-11 Method: X-RAY DIFFRACTION (2.51 Å) Cite: Dynamic tuning of FRET in a green fluorescent protein biosensor. Sci Adv, 5, 2019
6G7Q	Trichodesmium Tery_3377 (IdiA) (FutA) in complex with iron and citrate ligands. Descriptor: CHLORIDE ION, CITRATE ANION, Extracellular solute-binding protein, ... Authors: Machelett, M.M, Tews, I. Deposit date: 2018-04-06 Release date: 2018-09-12 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Structural and functional characterization of IdiA/FutA (Tery_3377), an iron-binding protein from the ocean diazotrophTrichodesmium erythraeum. J. Biol. Chem., 293, 2018
6G7P	Trichodesmium Tery_3377 (IdiA) (FutA) with iron and water ligands. Descriptor: CHLORIDE ION, Extracellular solute-binding protein, family 1, ... Authors: Machelett, M.M, Tews, I. Deposit date: 2018-04-06 Release date: 2018-09-12 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structural and functional characterization of IdiA/FutA (Tery_3377), an iron-binding protein from the ocean diazotrophTrichodesmium erythraeum. J. Biol. Chem., 293, 2018

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