Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1KVW
DownloadVisualize
BU of 1kvw by Molmil
CARBOXYLIC ESTER HYDROLASE, SINGLE MUTANT H48Q OF BOVINE PANCREATIC PLA2 ENZYME
Descriptor: CALCIUM ION, PHOSPHOLIPASE A2
Authors:Sundaralingam, M.
Deposit date:1998-04-24
Release date:1998-11-18
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structures of the catalytic site mutants D99A and H48Q and the calcium-loop mutant D49E of phospholipase A2.
Acta Crystallogr.,Sect.D, 55, 1999
4V0S
DownloadVisualize
BU of 4v0s by Molmil
Crystal structure of Mycobacterium tuberculosis Type II Dehydroquinase D88N mutant inhibited by a 3-dehydroquinic acid derivative
Descriptor: (1R,2S,4S,5R)-2-(2,3,4,5,6-pentafluorophenyl)methyl-1,4,5-trihydroxy-3-oxocyclohexane-1-carboxylic acid, 3,4-DIHYDROXY-2-[(2,3,4,5,6-PENTAFLUOROPHENYL)METHYL]BENZOIC ACID, 3-DEHYDROQUINATE DEHYDRATASE, ...
Authors:Otero, J.M, Llamas-Saiz, A.L, Santiago, C, Lamb, H, Hawkins, A.R, Maneiro, M, Peon, A, Gonzalez-Bello, C, van Raaij, M.J.
Deposit date:2014-09-18
Release date:2016-01-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Investigation of the Dehydratation Mechanism Catalyzed by the Type II Dehydroquinase
To be Published
8VZG
DownloadVisualize
BU of 8vzg by Molmil
Carbonic anhydrase II mutant with DRD function
Descriptor: 5-ACETAMIDO-1,3,4-THIADIAZOLE-2-SULFONAMIDE, CITRATE ANION, Carbonic anhydrase 2, ...
Authors:Sethi, D.K.
Deposit date:2024-02-11
Release date:2024-12-11
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Functional regulation of membrane-bound cytokine activity in engineered T cells via drug-responsive domains derived from carbonic anhydrase 2
To Be Published
8VG9
DownloadVisualize
BU of 8vg9 by Molmil
Crystallographic structure of Ruminococcus champanellensis xylanase (RcXyn30A)
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, FLUORIDE ION, ...
Authors:Vacilotto, M.M, Araujo, E.A, Polikarpov, I.
Deposit date:2023-12-24
Release date:2024-12-25
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Crystallographic structure of Ruminococcus champanellensis xylanase (RcXyn30A)
To Be Published
8VFQ
DownloadVisualize
BU of 8vfq by Molmil
De novo design apixaban-binding protein: apx1049
Descriptor: 1-(4-METHOXYPHENYL)-7-OXO-6-[4-(2-OXOPIPERIDIN-1-YL)PHENYL]-4,5,6,7-TETRAHYDRO-1H-PYRAZOLO[3,4-C]PYRIDINE-3-CARBOXAMIDE, De novo designed apixaban-binding protein apx1049
Authors:Bera, A.K, Lee, G.R, Baker, D.
Deposit date:2023-12-21
Release date:2024-12-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Small-molecule binding and sensing with a designed protein family
To Be Published
1KTU
DownloadVisualize
BU of 1ktu by Molmil
NuiA
Descriptor: NuiA
Authors:Kirby, T.W, Mueller, G.A, DeRose, E.F, Lebetkin, M.S, Meiss, G, Pingoud, A, London, R.E.
Deposit date:2002-01-17
Release date:2002-12-04
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The Nuclease A Inhibitor represents a new variation of the rare PR-1 fold.
J.Mol.Biol., 320, 2002
1KJ5
DownloadVisualize
BU of 1kj5 by Molmil
Solution Structure of Human beta-defensin 1
Descriptor: BETA-DEFENSIN 1
Authors:Schibli, D.J, Hunter, H.N, Aseyev, V, Starner, T.D, Wiencek, J.M, McCray Jr, P.B, Tack, B.F, Vogel, H.J.
Deposit date:2001-12-04
Release date:2002-03-20
Last modified:2024-11-13
Method:SOLUTION NMR
Cite:The solution structures of the human beta-defensins lead to a better understanding of the potent bactericidal activity of HBD3 against Staphylococcus aureus.
J.Biol.Chem., 277, 2002
5IDY
DownloadVisualize
BU of 5idy by Molmil
Crystal structure of an oxidoreductase from Burkholderia vietnamiensis in complex with NADP
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2016-02-24
Release date:2016-03-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of an oxidoreductase from Burkholderia vietnamiensis in complex with NADP
to be published
1KVM
DownloadVisualize
BU of 1kvm by Molmil
X-ray Crystal Structure of AmpC WT beta-Lactamase in Complex with Covalently Bound Cephalothin
Descriptor: 5-METHYLENE-2-[2-OXO-1-(2-THIOPHEN-2-YL-ACETYLAMINO)-ETHYL]-5,6-DIHYDRO-2H-[1,3]THIAZINE-4-CARBOXYLIC ACID, PHOSPHATE ION, beta-lactamase
Authors:Beadle, B.M, Trehan, I, Focia, P.J, Shoichet, B.K.
Deposit date:2002-01-27
Release date:2002-03-13
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Structural milestones in the reaction pathway of an amide hydrolase: substrate, acyl, and product complexes of cephalothin with AmpC beta-lactamase.
Structure, 10, 2002
1KVY
DownloadVisualize
BU of 1kvy by Molmil
CARBOXYLIC ESTER HYDROLASE, SINGLE MUTANT D49E COORDINATED TO CALCIUM
Descriptor: CALCIUM ION, PHOSPHOLIPASE A2
Authors:Sundaralingam, M.
Deposit date:1998-04-29
Release date:1998-11-18
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structures of the catalytic site mutants D99A and H48Q and the calcium-loop mutant D49E of phospholipase A2.
Acta Crystallogr.,Sect.D, 55, 1999
5IJU
DownloadVisualize
BU of 5iju by Molmil
Structure of an AA10 Lytic Polysaccharide Monooxygenase from Bacillus amyloliquefaciens with Cu(II) bound
Descriptor: 1,2-ETHANEDIOL, BaAA10 Lytic Polysaccharide Monooxygenase, CALCIUM ION, ...
Authors:Gregory, R.C, Hemsworth, G.R, Turkenburg, J.P, Hart, S.J, Walton, P.H, Davies, G.J.
Deposit date:2016-03-02
Release date:2016-09-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Activity, stability and 3-D structure of the Cu(ii) form of a chitin-active lytic polysaccharide monooxygenase from Bacillus amyloliquefaciens.
Dalton Trans, 45, 2016
8VYS
DownloadVisualize
BU of 8vys by Molmil
Cryo-EM Structure of the BRAF V600E monomer bound to PLX8394
Descriptor: (3S)-N-{3-[5-(2-cyclopropylpyrimidin-5-yl)-1H-pyrrolo[2,3-b]pyridine-3-carbonyl]-2,4-difluorophenyl}-3-fluoropyrrolidine-1-sulfonamide, 14-3-3 protein zeta/delta, Serine/threonine-protein kinase B-raf
Authors:Lavoie, H, Lajoie, D, Jin, T, Decossas, M, Maisonneuve, P, Therrien, M.
Deposit date:2024-02-09
Release date:2025-05-28
Last modified:2025-06-25
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:BRAF oncogenic mutants evade autoinhibition through a common mechanism.
Science, 388, 2025
8VYU
DownloadVisualize
BU of 8vyu by Molmil
Cryo-EM Structure of the BRAF WT monomer bound to PLX8394
Descriptor: (3S)-N-{3-[5-(2-cyclopropylpyrimidin-5-yl)-1H-pyrrolo[2,3-b]pyridine-3-carbonyl]-2,4-difluorophenyl}-3-fluoropyrrolidine-1-sulfonamide, 14-3-3 protein zeta/delta, Serine/threonine-protein kinase B-raf
Authors:Lavoie, H, Lajoie, D, Jin, T, Decossas, M, Maisonneuve, P, Therrien, M.
Deposit date:2024-02-09
Release date:2025-05-28
Last modified:2025-06-25
Method:ELECTRON MICROSCOPY (4.07 Å)
Cite:BRAF oncogenic mutants evade autoinhibition through a common mechanism.
Science, 388, 2025
5VX0
DownloadVisualize
BU of 5vx0 by Molmil
Bak in complex with Bim-h3Glg
Descriptor: 1,2-ETHANEDIOL, Bcl-2 homologous antagonist/killer, Bcl-2-like protein 11, ...
Authors:Brouwer, J.M, Lan, P, Lessene, G, Colman, P.M, Czabotar, P.E.
Deposit date:2017-05-23
Release date:2017-11-15
Last modified:2025-04-02
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:Conversion of Bim-BH3 from Activator to Inhibitor of Bak through Structure-Based Design.
Mol. Cell, 68, 2017
5VRG
DownloadVisualize
BU of 5vrg by Molmil
Structural insights into lipoprotein N-acylation by Escherichia coli apolipoprotein N-acyltransferase
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Apolipoprotein N-acyltransferase, CHLORIDE ION, ...
Authors:Murray, J.M, Noland, C.L.
Deposit date:2017-05-10
Release date:2017-07-12
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.518 Å)
Cite:Structural insights into lipoprotein N-acylation by Escherichia coli apolipoprotein N-acyltransferase.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
2BMO
DownloadVisualize
BU of 2bmo by Molmil
The Crystal Structure of Nitrobenzene Dioxygenase
Descriptor: 1,2-ETHANEDIOL, ETHANOL, FE (III) ION, ...
Authors:Friemann, R, Ivkovic-Jensen, M.M, Lessner, D.J, Yu, C, Gibson, D.T, Parales, R.E, Eklund, H, Ramaswamy, S.
Deposit date:2005-03-15
Release date:2005-05-04
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structural insight into the dioxygenation of nitroarene compounds: the crystal structure of nitrobenzene dioxygenase.
J. Mol. Biol., 348, 2005
5VQK
DownloadVisualize
BU of 5vqk by Molmil
X-ray co-structure of nuclear receptor ROR-gammat Ligand Binding Domain with a inverse agonist and SRC2 peptide
Descriptor: 1-(4-fluorophenyl)-7-methoxy-N-{[4-(methylsulfamoyl)phenyl]methyl}-1H-pyrazolo[3,4-c]pyridine-4-carboxamide, Nuclear receptor ROR-gamma, SRC2 chimera
Authors:Li, X.
Deposit date:2017-05-09
Release date:2018-05-16
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:X-ray co-structure of nuclear receptor ROR-gammat Ligand Binding Domain with a inverse agonist and SRC2 peptide
To Be Published
5ID7
DownloadVisualize
BU of 5id7 by Molmil
Crystal structure of human serum albumin in complex with phosphorodithioate derivative of myristoyl cyclic phosphatidic acid (cPA)
Descriptor: (4S)-2-sulfanylidene-4-[(tetradecanoyloxy)methyl]-1,3,2lambda~5~-dioxaphospholane-2-thiolate, DI(HYDROXYETHYL)ETHER, Serum albumin, ...
Authors:Sekula, B, Bujacz, A, Rytczak, P, Bujacz, G.
Deposit date:2016-02-24
Release date:2016-05-11
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Structural evidence of the species-dependent albumin binding of the modified cyclic phosphatidic acid with cytotoxic properties.
Biosci.Rep., 36, 2016
5IDP
DownloadVisualize
BU of 5idp by Molmil
CDK8-CYCC IN COMPLEX WITH (3-Amino-1H-indazol-5-yl)-[(S)-2-(4-fluoro-phenyl)-piperidin-1-yl]-methanone
Descriptor: (3-amino-1H-indazol-5-yl)[(2S)-2-(4-fluorophenyl)piperidin-1-yl]methanone, Cyclin-C, Cyclin-dependent kinase 8, ...
Authors:Musil, D, Blagg, J, Mallinger, A, Czodrowski, P, Schiemann, K.
Deposit date:2016-02-24
Release date:2016-12-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structure-Based Optimization of Potent, Selective, and Orally Bioavailable CDK8 Inhibitors Discovered by High-Throughput Screening.
J. Med. Chem., 59, 2016
8VIG
DownloadVisualize
BU of 8vig by Molmil
EgtB-IV from Geminocystis sp. isolate SKYG4, an ergothioneine-biosynthetic type IV sulfoxide synthase in complex with hercynine
Descriptor: 1,2-ETHANEDIOL, FE (III) ION, N,N,N-trimethyl-histidine, ...
Authors:Ireland, K.A, Davis, K.M.
Deposit date:2024-01-04
Release date:2024-08-07
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural insights into the convergent evolution of sulfoxide synthase EgtB-IV, an ergothioneine-biosynthetic homolog of ovothiol synthase OvoA.
Structure, 32, 2024
5IDU
DownloadVisualize
BU of 5idu by Molmil
Crystal structure of an acyl-CoA dehydrogenase domain protein from Burkholderia phymatum bound to FAD
Descriptor: 1,2-ETHANEDIOL, Acyl-CoA dehydrogenase domain protein, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID), Edwards, T.E.
Deposit date:2016-02-24
Release date:2016-03-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of an acyl-CoA dehydrogenase domain protein from Burkholderia phymatum bound to FAD
To Be Published
8VDD
DownloadVisualize
BU of 8vdd by Molmil
Crystal structure of Proinsulin C-peptide bound to HLA-DQ8
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, MHC class II HLA-DQ-alpha chain, ...
Authors:Tran, T.M, Lim, J.J, Loh, T.Y, Mannering, I.S, Rossjohn, J, Reid, H.H.
Deposit date:2023-12-14
Release date:2024-08-07
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:A structural basis of T cell cross-reactivity to native and spliced self-antigens presented by HLA-DQ8.
J.Biol.Chem., 300, 2024
3SQL
DownloadVisualize
BU of 3sql by Molmil
Crystal Structure of Glycoside Hydrolase from Synechococcus
Descriptor: 1,2-ETHANEDIOL, ACETIC ACID, DI(HYDROXYETHYL)ETHER, ...
Authors:Kim, Y, Chhor, G, Bearden, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2011-07-05
Release date:2011-07-20
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal Structure of Glycoside Hydrolase from Synechococcus
To be Published
4LZB
DownloadVisualize
BU of 4lzb by Molmil
Uracil binding pocket in Vaccinia virus uracil DNA glycosylase
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
Authors:Schormann, N, Chattopadhyay, D.
Deposit date:2013-07-31
Release date:2013-12-11
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Structure of the uracil complex of Vaccinia virus uracil DNA glycosylase.
Acta Crystallogr.,Sect.F, 69, 2013
5IC1
DownloadVisualize
BU of 5ic1 by Molmil
Structural analysis of a talin triple domain module, E1794Y, E1797Y, Q1801Y mutant
Descriptor: 1,2-ETHANEDIOL, Talin-1
Authors:Wu, J, Chang, Y.-C.E, Zhang, H, Huang, Q.-Q.
Deposit date:2016-02-22
Release date:2016-05-18
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and Functional Analysis of a Talin Triple-Domain Module Suggests an Alternative Talin Autoinhibitory Configuration.
Structure, 24, 2016

243531

PDB entries from 2025-10-22

PDB statisticsPDBj update infoContact PDBjnumon