Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4UP1
DownloadVisualize
BU of 4up1 by Molmil
Crystal structure of native human Thymidylate synthase in active form
Descriptor: SULFATE ION, THYMIDYLATE SYNTHASE
Authors:Deschamps, P, Rety, S, Leulliot, N.
Deposit date:2014-06-11
Release date:2015-06-24
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.991 Å)
Cite:Crystal structure of the active form of native human thymidylate synthase in the absence of bound substrates.
Acta Crystallogr F Struct Biol Commun, 73, 2017
4GN5
DownloadVisualize
BU of 4gn5 by Molmil
OBody AM3L15 bound to hen egg-white lysozyme
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, GLYCEROL, ...
Authors:Steemson, J.D, Liddament, M.T.
Deposit date:2012-08-16
Release date:2013-08-21
Last modified:2014-02-12
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Tracking Molecular Recognition at the Atomic Level with a New Protein Scaffold Based on the OB-Fold.
Plos One, 9, 2014
4GN4
DownloadVisualize
BU of 4gn4 by Molmil
OBody AM2EP06 bound to hen egg-white lysozyme
Descriptor: GLYCEROL, Lysozyme C, OBody AM2EP06
Authors:Steemson, J.D, Liddament, M.T.
Deposit date:2012-08-16
Release date:2013-08-21
Last modified:2014-02-12
Method:X-RAY DIFFRACTION (1.861 Å)
Cite:Tracking Molecular Recognition at the Atomic Level with a New Protein Scaffold Based on the OB-Fold.
Plos One, 9, 2014
4GPM
DownloadVisualize
BU of 4gpm by Molmil
Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR264.
Descriptor: Engineered Protein OR264
Authors:Vorobiev, S, Su, M, Parmeggiani, F, Seetharaman, J, Huang, P.-S, Maglaqui, M, Xiao, R, Lee, D, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2012-08-21
Release date:2012-09-05
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.002 Å)
Cite:Computational design of self-assembling cyclic protein homo-oligomers.
NAT.CHEM., 9, 2017
4H8F
DownloadVisualize
BU of 4h8f by Molmil
Crystal structure of a parallel 4-helix coiled coil CC-Hex-II- 22
Descriptor: CC-Hex-II-Phi22, GLYCEROL, TERTIARY-BUTYL ALCOHOL
Authors:Chi, B, Zaccai, N.R, Brady, R.L, Woolfson, D.N.
Deposit date:2012-09-22
Release date:2014-02-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:TBA
J.Am.Chem.Soc.
4HB5
DownloadVisualize
BU of 4hb5 by Molmil
Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR267.
Descriptor: Engineered Protein
Authors:Vorobiev, S, Su, M, Parmeggiani, F, Seetharaman, J, Huang, P.-S, Maglaqui, M, Xiao, R, Lee, D, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2012-09-27
Release date:2012-10-10
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.294 Å)
Cite:Computational design of self-assembling cyclic protein homo-oligomers.
NAT.CHEM., 9, 2017
4HDH
DownloadVisualize
BU of 4hdh by Molmil
Crystal Structure of viral RdRp in complex with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Polyprotein, ZINC ION
Authors:Surana, P, Nair, D.T.
Deposit date:2012-10-02
Release date:2013-12-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:RNA-dependent RNA polymerase of Japanese encephalitis virus binds the initiator nucleotide GTP to form a mechanistically important pre-initiation state.
Nucleic Acids Res., 42, 2014
4H8G
DownloadVisualize
BU of 4h8g by Molmil
crystal structure of a parallel 6-helix coiled coil CC-Hex-IL- 22
Descriptor: CC-Hex-IL-22
Authors:Chi, B, Zaccai, N.R, Brady, R.L, Woolfson, D.N.
Deposit date:2012-09-22
Release date:2014-02-05
Method:X-RAY DIFFRACTION (1.699 Å)
Cite:TBA
J.Am.Chem.Soc.
4DB9
DownloadVisualize
BU of 4db9 by Molmil
Designed Armadillo repeat protein (YIIIM3AIII)
Descriptor: Armadillo repeat protein, YIIIM3AIII
Authors:Madhurantakam, C, Varadamsetty, G, Grutter, M.G, Pluckthun, A, Mittl, P.R.E.
Deposit date:2012-01-13
Release date:2012-05-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure-based optimization of designed Armadillo-repeat proteins.
Protein Sci., 21, 2012
4H8O
DownloadVisualize
BU of 4h8o by Molmil
Crystal structure of a parallel 6-helix coiled coil CC-Hex-N24
Descriptor: CC-Hex-N24
Authors:Chi, B, Zaccai, N.R, Brady, R.L, Woolfson, D.N.
Deposit date:2012-09-23
Release date:2014-02-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.598 Å)
Cite:TBA
To be Published
4H8L
DownloadVisualize
BU of 4h8l by Molmil
Crystal structure of a parallel 6-helix coiled coil CC-Hex-D24-A5/7C
Descriptor: CC-Hex-D24-A5/7C
Authors:Chi, B, Zaccai, N.R, Brady, R.L, Woolfson, D.N.
Deposit date:2012-09-23
Release date:2014-02-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.7501 Å)
Cite:TBA
J.Am.Chem.Soc.
4HDG
DownloadVisualize
BU of 4hdg by Molmil
Crystal Structure of viral RdRp in complex with GTP
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, Polyprotein, ZINC ION
Authors:Surana, P, Nair, D.T.
Deposit date:2012-10-02
Release date:2013-12-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:RNA-dependent RNA polymerase of Japanese encephalitis virus binds the initiator nucleotide GTP to form a mechanistically important pre-initiation state.
Nucleic Acids Res., 42, 2014
4DZU
DownloadVisualize
BU of 4dzu by Molmil
Complex of 3-alpha bound to gp41-5
Descriptor: 3-alpha, GLYCEROL, gp41-5
Authors:Johnson, L.M, Mortenson, D.E, Yun, H.G, Horne, W.S, Ketas, T.J, Lu, M, Moore, J.P, Gellman, S.H.
Deposit date:2012-03-01
Release date:2012-05-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Enhancement of alpha-helix mimicry by an alpha / beta-peptide foldamer via incorporation of a dense ionic side-chain array.
J.Am.Chem.Soc., 134, 2012
4DZV
DownloadVisualize
BU of 4dzv by Molmil
Complex of 4-alpha/beta bound to gp41-5
Descriptor: 4-alpha/beta, GLYCEROL, gp41-5
Authors:Johnson, L.M, Mortenson, D.E, Yun, H.G, Horne, W.S, Ketas, T.J, Lu, M, Moore, J.P, Gellman, S.H.
Deposit date:2012-03-01
Release date:2012-05-02
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Enhancement of alpha-helix mimicry by an alpha / beta-peptide foldamer via incorporation of a dense ionic side-chain array.
J.Am.Chem.Soc., 134, 2012
4HQD
DownloadVisualize
BU of 4hqd by Molmil
Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium Target OR265.
Descriptor: Engineered Protein OR265
Authors:Vorobiev, S, Su, M, Parmeggiani, F, Seetharaman, J, Huang, P.-S, Maglaqui, M, Xiao, R, Lee, D, Everett, J.K, Acton, T.B, Baker, D, Montelione, G.T, Tong, L, Hunt, J.F, Northeast Structural Genomics Consortium (NESG)
Deposit date:2012-10-25
Release date:2012-11-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.433 Å)
Cite:Crystal Structure of Engineered Protein OR265.
To be Published
4H8M
DownloadVisualize
BU of 4h8m by Molmil
Crystal structure of a parallel 6-helix coiled coil CC-Hex-H24-A5/7C
Descriptor: CC-Hex-H24-A5/7C
Authors:Chi, B, Zaccai, N.R, Brady, R.L, Woolfson, D.N.
Deposit date:2012-09-23
Release date:2014-02-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.4292 Å)
Cite:TBD
To be Published
4HB1
DownloadVisualize
BU of 4hb1 by Molmil
A DESIGNED FOUR HELIX BUNDLE PROTEIN.
Descriptor: DHP1, UNKNOWN ATOM OR ION
Authors:Schafmeister, C.E, Laporte, S.L, Miercke, L.J.W, Stroud, R.M.
Deposit date:1997-11-10
Release date:1998-03-04
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A designed four helix bundle protein with native-like structure.
Nat.Struct.Biol., 4, 1997
6SS1
DownloadVisualize
BU of 6ss1 by Molmil
Kemp Eliminase HG3.17 mutant Q50A, E47N, N300D Complexed with Transition State Analog 6-Nitrobenzotriazole
Descriptor: 6-NITROBENZOTRIAZOLE, Kemp Eliminase HG3.17 Q50A, E47N,N300D Complexed with Transition State Analog 6-Nitrobenzotriazole, ...
Authors:Bloch, J.S, Pinkas, D.M, Hilvert, D.
Deposit date:2019-09-06
Release date:2020-04-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Contribution of Oxyanion Stabilization to Kemp Eliminase Efficiencyproficiency
Acs Catalysis, 2020
6SRY
DownloadVisualize
BU of 6sry by Molmil
Kemp Eliminase HG3.17 mutant Q50S, E47N, N300D Complexed with Transition State Analog 6-Nitrobenzotriazole
Descriptor: 6-NITROBENZOTRIAZOLE, Kemp Eliminase HG3.17 Q50S, E47N,N300D, ...
Authors:Bloch, J.S, Pinkas, D.M, Hilvert, D.
Deposit date:2019-09-06
Release date:2020-04-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Contribution of Oxyanion Stabilization to Kemp Eliminase Efficiencyproficiency
Acs Catalysis, 2020
4OZC
DownloadVisualize
BU of 4ozc by Molmil
Backbone Modifications in the Protein GB1 Helix and Loops: beta-ACPC21, beta-ACPC24, beta-3-Lys28, beta-3-Lys31, beta-ACPC35, beta-ACPC40
Descriptor: GLYCEROL, SULFATE ION, Streptococcal Protein GB1 Backbone Modified Variant: beta-ACPC21, ...
Authors:Reinert, Z.E, Horne, W.S.
Deposit date:2014-02-14
Release date:2014-07-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.301 Å)
Cite:Folding Thermodynamics of Protein-Like Oligomers with Heterogeneous Backbones.
Chem Sci, 5, 2014
8SHM
DownloadVisualize
BU of 8shm by Molmil
The solution structure of the mini-protein EHEE_rd2_0005
Descriptor: Mini-protein EHEE_rd2_0005
Authors:Houliston, S, Rocklin, G, Arrowsmith, C.H.
Deposit date:2023-04-14
Release date:2024-04-17
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The solution structure of the mini-protein EHEE_rd2_0005
To Be Published
6TU6
DownloadVisualize
BU of 6tu6 by Molmil
Kemp Eliminase HG3.17 mutant Q50M, E47N, N300D Complexed with Transition State Analog 6-Nitrobenzotriazole
Descriptor: 6-NITROBENZOTRIAZOLE, Kemp Eliminase HG3.17 mutant Q50M, E47N, ...
Authors:Bloch, J.S, Hilvert, D.
Deposit date:2020-01-02
Release date:2020-04-01
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Contribution of Oxyanion Stabilization to Kemp Eliminase Efficiencyproficiency
Acs Catalysis, 2020
8QZN
DownloadVisualize
BU of 8qzn by Molmil
DARPin-Armadillo fusion protein with a selected Tyrosin pocket binding to the fused target peptide
Descriptor: 1,2-ETHANEDIOL, DARPin-Armadillo fusion protein with Tyrosin pocket and linked target peptide, SULFATE ION
Authors:Stark, Y, Menard, F, Jeliazkov, J, Ernst, P, Chembath, A, Ashraf, M, Hine, A, Plueckthun, A.
Deposit date:2023-10-27
Release date:2024-07-03
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Modular binder technology by NGS-aided, high-resolution selection in yeast of designed armadillo modules.
Proc.Natl.Acad.Sci.USA, 121, 2024
4NDJ
DownloadVisualize
BU of 4ndj by Molmil
Crystal Structure of a computational designed engrailed homeodomain variant fused with YFP
Descriptor: Green fluorescent protein, chimeric construct,GFP-like fluorescent chromoprotein FP506, related
Authors:Mou, Y, Mayo, S.L.
Deposit date:2013-10-26
Release date:2014-11-05
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Using Molecular Dynamics Simulations as an Aid in the Prediction of Domain Swapping of Computationally Designed Protein Variants.
J.Mol.Biol., 427, 2015
8SZZ
DownloadVisualize
BU of 8szz by Molmil
CryoEM Structure of Computationally Designed Nanocage O32-ZL4
Descriptor: O32-ZL4 Component A, O32-ZL4 Component B, SODIUM ION
Authors:Weidle, C, Borst, A.
Deposit date:2023-05-30
Release date:2023-11-01
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Accurate computational design of three-dimensional protein crystals.
Nat Mater, 22, 2023

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon