Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

821P
DownloadVisualize
BU of 821p by Molmil
THREE-DIMENSIONAL STRUCTURES AND PROPERTIES OF A TRANSFORMING AND A NONTRANSFORMING GLYCINE-12 MUTANT OF P21H-RAS
Descriptor: C-H-RAS P21 PROTEIN, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
Authors:Scheidig, A.J, Krengel, U, Pai, E.F, Kabsch, W, Wittinghofer, A, Goody, R.S.
Deposit date:1993-03-29
Release date:1994-01-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Three-dimensional structures and properties of a transforming and a nontransforming glycine-12 mutant of p21H-ras.
Biochemistry, 32, 1993
6STK
DownloadVisualize
BU of 6stk by Molmil
Crystal structure of the CC-chemokine 5 (CCL5) E66S mutation
Descriptor: ACETATE ION, C-C motif chemokine 5, GLYCEROL
Authors:Ramirez-Escudero, M, Janssen, B.J.C.
Deposit date:2019-09-10
Release date:2020-09-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Structural characterization of anti-CCL5 activity of the tick salivary protein evasin-4.
J.Biol.Chem., 295, 2020
6T0M
DownloadVisualize
BU of 6t0m by Molmil
Cationic Trypsin in Complex with a D-Phe-Pro-diaminopyridine derivative
Descriptor: (2~{S})-1-[(2~{R})-2-azanyl-3-phenyl-propanoyl]-~{N}-[[2,6-bis(azanyl)pyridin-4-yl]methyl]pyrrolidine-2-carboxamide, CALCIUM ION, Cationic trypsin, ...
Authors:Ngo, K, Heine, A, Klebe, G.
Deposit date:2019-10-03
Release date:2020-05-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Protein-Induced Change in Ligand Protonation during Trypsin and Thrombin Binding: Hint on Differences in Selectivity Determinants of Both Proteins?
J.Med.Chem., 63, 2020
6FOL
DownloadVisualize
BU of 6fol by Molmil
Domain II of the human copper chaperone in complex with human Cu,Zn superoxide dismutase
Descriptor: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, Copper chaperone for superoxide dismutase, GLYCEROL, ...
Authors:Sala, F.A, Wright, G.S.A, Antonyuk, S.V, Garratt, R.C, Hasnain, S.S.
Deposit date:2018-02-07
Release date:2019-01-30
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Molecular recognition and maturation of SOD1 by its evolutionarily destabilised cognate chaperone hCCS.
Plos Biol., 17, 2019
6SVV
DownloadVisualize
BU of 6svv by Molmil
Reference structure of bovine trypsin (odd frames of crystal x30)
Descriptor: BENZAMIDINE, CALCIUM ION, Cationic trypsin, ...
Authors:Ahlberg Gagner, V, Lundholm, I, Garcia-Bonete, M.J, Rodilla, H, Friedman, R, Zhaunerchyk, V, Bourenkov, G, Schneider, T, Stake, J, Katona, G.
Deposit date:2019-09-19
Release date:2020-01-22
Last modified:2020-01-29
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Clustering of atomic displacement parameters in bovine trypsin reveals a distributed lattice of atoms with shared chemical properties.
Sci Rep, 9, 2019
5BYZ
DownloadVisualize
BU of 5byz by Molmil
ERK5 in complex with small molecule
Descriptor: 4-({5-fluoro-4-[2-methyl-1-(propan-2-yl)-1H-imidazol-5-yl]pyrimidin-2-yl}amino)-N-[2-(piperidin-1-yl)ethyl]benzamide, GLYCEROL, Mitogen-activated protein kinase 7
Authors:Chen, H, Tucker, J, Wang, X, Gavine, P.R, Philips, C, Augustin, M.A, Schreiner, P, Steinbacher, S, Preston, M, Ogg, D.
Deposit date:2015-06-11
Release date:2016-05-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Discovery of a novel allosteric inhibitor-binding site in ERK5: comparison with the canonical kinase hinge ATP-binding site.
Acta Crystallogr D Struct Biol, 72, 2016
6SWB
DownloadVisualize
BU of 6swb by Molmil
The REC domain of AraT, a response regulator from Geobacillus stearothermophilus
Descriptor: DI(HYDROXYETHYL)ETHER, Two-component response regulator
Authors:Lansky, S, Lavid, N, Shoham, Y, Shoham, G.
Deposit date:2019-09-20
Release date:2020-10-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.259 Å)
Cite:The REC domain of AraT, a response regulator from Geobacillus stearothermophilus
To Be Published
6STG
DownloadVisualize
BU of 6stg by Molmil
Human Rab8a phosphorylated at Ser111 in complex with GPPNP
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ...
Authors:Vieweg, S, Mulholland, K, Braeuning, B, Kachariya, N, Lai, Y, Toth, R, Sattler, M, Groll, M, Itzen, A, Muqit, M.M.K.
Deposit date:2019-09-10
Release date:2020-04-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:PINK1-dependent phosphorylation of Serine111 within the SF3 motif of Rab GTPases impairs effector interactions and LRRK2-mediated phosphorylation at Threonine72.
Biochem.J., 477, 2020
5C65
DownloadVisualize
BU of 5c65 by Molmil
Structure of the human glucose transporter GLUT3 / SLC2A3
Descriptor: CHOLESTEROL HEMISUCCINATE, Octyl Glucose Neopentyl Glycol, Solute carrier family 2, ...
Authors:Pike, A.C.W, Quigley, A, Chu, A, Tessitore, A, Xia, X, Mukhopadhyay, S, Wang, D, Kupinska, K, Strain-Damerell, C, Chalk, R, Burgess-Brown, N.A, Edwards, A.M, Arrowsmith, C.H, Bountra, C, Carpenter, E.P, Structural Genomics Consortium (SGC)
Deposit date:2015-06-22
Release date:2015-07-08
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structure of the human glucose transporter GLUT3 / SLC2A3
To Be Published
6FSH
DownloadVisualize
BU of 6fsh by Molmil
Crystal structure of hybrid P450 OxyBtei(BC/FGvan)
Descriptor: ACETATE ION, OxyB protein, POTASSIUM ION, ...
Authors:Brieke, C, Tarnawski, M, Greule, A, Cryle, M.J.
Deposit date:2018-02-19
Release date:2018-05-23
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Investigating Cytochrome P450 specificity during glycopeptide antibiotic biosynthesis through a homologue hybridization approach.
J. Inorg. Biochem., 185, 2018
5C6L
DownloadVisualize
BU of 5c6l by Molmil
Crystal Structure of Gadolinium derivative of HEWL solved using intense Free-Electron Laser radiation
Descriptor: 10-((2R)-2-HYDROXYPROPYL)-1,4,7,10-TETRAAZACYCLODODECANE 1,4,7-TRIACETIC ACID, CHLORIDE ION, GADOLINIUM ATOM, ...
Authors:Galli, L, Barends, T.R.M, Son, S.-K, White, T.A, Barty, A, Botha, S, Boutet, S, Caleman, C, Doak, R.B, Nanao, M.H, Nass, K, Shoeman, R.L, Timneanu, N, Santra, R, Schlichting, I, Chapman, H.N.
Deposit date:2015-06-23
Release date:2015-07-08
Last modified:2018-11-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Towards phasing using high X-ray intensity.
Iucrj, 2, 2015
6G4J
DownloadVisualize
BU of 6g4j by Molmil
Structure of the protein kinase YabT from Bacillus subtilis in complex with an alphaREP crystallization helper
Descriptor: Probable serine/threonine-protein kinase YabT, alphaREP bE8
Authors:Nessler, S, Cavagnino, A, Rabefiraisana, J.L.
Deposit date:2018-03-27
Release date:2019-01-30
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:Structural Analysis of the Hanks-Type Protein Kinase YabT FromBacillus subtilisProvides New Insights in its DNA-Dependent Activation.
Front Microbiol, 9, 2018
3CAL
DownloadVisualize
BU of 3cal by Molmil
Crystal structure of the second and third fibronectin F1 modules in complex with a fragment of staphylococcus aureus fnbpa-5
Descriptor: Fibronectin, peptide from Fibronectin-binding protein A
Authors:Bingham, R.J.
Deposit date:2008-02-20
Release date:2008-08-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of fibronectin-binding sites from Staphylococcus aureus FnBPA in complex with fibronectin domains
Proc.Natl.Acad.Sci.Usa, 105, 2008
3CBD
DownloadVisualize
BU of 3cbd by Molmil
Directed Evolution of cytochrome P450 BM3, to octane monoxygenase 139-3
Descriptor: Bifunctional P-450/NADPH-P450 reductase, N-PALMITOYLGLYCINE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Meharenna, Y.T, Li, H, Poulos, T.L.
Deposit date:2008-02-21
Release date:2008-07-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Directed Evolution of cytochrome P450 BM3, to octane monoxygenase 139-3
To be Published
6SVG
DownloadVisualize
BU of 6svg by Molmil
Terahertz irradiated structure of bovine trypsin (odd frames of crystal x41)
Descriptor: BENZAMIDINE, CALCIUM ION, Cationic trypsin, ...
Authors:Ahlberg Gagner, V, Lundholm, I, Garcia-Bonete, M.J, Rodilla, H, Friedman, R, Zhaunerchyk, V, Bourenkov, G, Schneider, T, Stake, J, Katona, G.
Deposit date:2019-09-18
Release date:2020-01-22
Last modified:2020-01-29
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Clustering of atomic displacement parameters in bovine trypsin reveals a distributed lattice of atoms with shared chemical properties.
Sci Rep, 9, 2019
6SY3
DownloadVisualize
BU of 6sy3 by Molmil
Cationic Trypsin in Complex with a D-DiPhe-Pro-pyridine derivative
Descriptor: (2~{S})-1-[(2~{R})-2-azanyl-3,3-diphenyl-propanoyl]-~{N}-(pyridin-4-ylmethyl)pyrrolidine-2-carboxamide, CALCIUM ION, Cationic Trypsin, ...
Authors:Ngo, K, Heine, A, Klebe, G.
Deposit date:2019-09-27
Release date:2020-05-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:Protein-Induced Change in Ligand Protonation during Trypsin and Thrombin Binding: Hint on Differences in Selectivity Determinants of Both Proteins?
J.Med.Chem., 63, 2020
6SYD
DownloadVisualize
BU of 6syd by Molmil
Crystal structure of the lysozyme in presence of bromophenol blue at pH 5.5
Descriptor: Lysozyme, SODIUM ION, bromophenol blue
Authors:Camara-Artigas, A, Plaza-Garrido, M, Salinas-Garcia, M.C.
Deposit date:2019-09-27
Release date:2020-09-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Lysozyme crystals dyed with bromophenol blue: where has the dye gone?
Acta Crystallogr D Struct Biol, 76, 2020
5C6Y
DownloadVisualize
BU of 5c6y by Molmil
A sperm whale myoglobin double mutant L29H/F43Y Mb with a Tyr-heme cross-link
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Yuan, H, Lin, Y.W, Tan, X.S.
Deposit date:2015-06-24
Release date:2015-11-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.793 Å)
Cite:How a novel tyrosine-heme cross-link fine-tunes the structure and functions of heme proteins: a direct comparitive study of L29H/F43Y myoglobin
Dalton Trans, 44, 2015
6FVF
DownloadVisualize
BU of 6fvf by Molmil
The Structure of CK2alpha with CCh503 bound
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Casein kinase II subunit alpha, [1-[2-(phenylsulfonylamino)ethyl]piperidin-4-yl]methyl 5-fluoranyl-2-methoxy-1~{H}-indole-3-carboxylate
Authors:Brear, P, Prudent, R, Laudet, B, Filhol, O, Cochet, C, Sautel, C, Moucadel, V, Bestgen, B, Engel, M, Ettaoussi, M, Lomberget, T, Le Borgne, M, Kufareva, I, Abagyan, R, Hyvonen, M.
Deposit date:2018-03-02
Release date:2019-06-19
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Discovery of holoenzyme-disrupting chemicals as substrate-selective CK2 inhibitors.
Sci Rep, 9, 2019
6SZM
DownloadVisualize
BU of 6szm by Molmil
Crystal structure of the ACVR1 (ALK2) kinase in complex with the compound M4K2009
Descriptor: 1,2-ETHANEDIOL, 1-[4-[4-methyl-5-(3,4,5-trimethoxyphenyl)pyridin-3-yl]phenyl]piperazine, AMMONIUM ION, ...
Authors:Adamson, R.J, Williams, E.P, Smil, D, Burgess-Brown, N, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Bullock, A.N.
Deposit date:2019-10-02
Release date:2019-10-16
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:Leveraging an Open Science Drug Discovery Model to Develop CNS-Penetrant ALK2 Inhibitors for the Treatment of Diffuse Intrinsic Pontine Glioma.
J.Med.Chem., 63, 2020
6G9D
DownloadVisualize
BU of 6g9d by Molmil
Fragment-based discovery of a highly potent, orally bioavailable inhibitor which modulates the phosphorylation and catalytic activity of ERK1/2
Descriptor: Mitogen-activated protein kinase 1, SULFATE ION, ~{N}-~{tert}-butyl-2-[5-[5-chloranyl-2-(oxan-4-ylamino)pyrimidin-4-yl]-3-oxidanylidene-1~{H}-isoindol-2-yl]ethanamide
Authors:O'Reilly, M.
Deposit date:2018-04-10
Release date:2018-05-30
Last modified:2018-06-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Fragment-Based Discovery of a Potent, Orally Bioavailable Inhibitor That Modulates the Phosphorylation and Catalytic Activity of ERK1/2.
J. Med. Chem., 61, 2018
6G9M
DownloadVisualize
BU of 6g9m by Molmil
Fragment-based discovery of a highly potent, orally bioavailable inhibitor which modulates the phosphorylation and catalytic activity of ERK1/2
Descriptor: 2-[5-[5-chloranyl-2-(oxan-4-ylamino)pyrimidin-4-yl]-3-oxidanylidene-1~{H}-isoindol-2-yl]-~{N}-(2-phenylpropan-2-yl)ethanamide, Mitogen-activated protein kinase 1, SULFATE ION
Authors:O'Reilly, M.
Deposit date:2018-04-11
Release date:2018-05-30
Last modified:2018-06-27
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Fragment-Based Discovery of a Potent, Orally Bioavailable Inhibitor That Modulates the Phosphorylation and Catalytic Activity of ERK1/2.
J. Med. Chem., 61, 2018
6G4Y
DownloadVisualize
BU of 6g4y by Molmil
Crystal structure of murine NF-kappaB inducing kinase (NIK) in complex with compound 1a
Descriptor: 10-[2-[(3~{R})-1-methyl-3-oxidanyl-2-oxidanylidene-pyrrolidin-3-yl]ethynyl]-~{N}3-(oxan-4-yl)-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepine-2,3-dicarboxamide, Mitogen-activated protein kinase kinase kinase 14, SULFATE ION
Authors:Hole, A.J, Hymowitz, S.G, McEwan, P.A.
Deposit date:2018-03-28
Release date:2018-07-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Scaffold-Hopping Approach To Discover Potent, Selective, and Efficacious Inhibitors of NF-kappa B Inducing Kinase.
J. Med. Chem., 61, 2018
3CAD
DownloadVisualize
BU of 3cad by Molmil
Crystal structure of Natural Killer Cell Receptor, Ly49G
Descriptor: Lectin-related NK cell receptor LY49G1
Authors:Cho, S.
Deposit date:2008-02-19
Release date:2008-04-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular Architecture of the Major Histocompatibility Complex Class I-binding Site of Ly49 Natural Killer Cell Receptors.
J.Biol.Chem., 283, 2008
6G5A
DownloadVisualize
BU of 6g5a by Molmil
Heme-carbene complex in myoglobin H64V/V68A containing an N-methylhistidine as the proximal ligand, 1.48 angstrom resolution
Descriptor: ETHYL ACETATE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tinzl, M, Hayashi, T, Mori, T, Hilvert, D.
Deposit date:2018-03-29
Release date:2018-08-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.483 Å)
Cite:Capture and characterization of a reactive haem-carbenoid complex in an artificial metalloenzyme
Nat Catal, 1, 2018

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon