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2DX2	NMR structure of TP (Target Peptide): monomeric 3_10 helix Descriptor: Target Peptide Authors: Tamura, A, Araki, M. Deposit date: 2006-08-23 Release date: 2007-01-02 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Transformation of an alpha-helix peptide into a beta-hairpin induced by addition of a fragment results in creation of a coexisting state. Proteins, 66, 2006
2DX3	NMR structure of DP5_conformation1: monomeric alpha-helix Descriptor: DP5_conformation1 Authors: Tamura, A, Araki, M. Deposit date: 2006-08-23 Release date: 2007-01-02 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Transformation of an alpha-helix peptide into a beta-hairpin induced by addition of a fragment results in creation of a coexisting state. Proteins, 66, 2006
2DX4	NMR structure of DP5_conformation2: monomeric beta-hairpin Descriptor: DP5_conformation2 Authors: Tamura, A, Araki, M. Deposit date: 2006-08-23 Release date: 2007-01-02 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Transformation of an alpha-helix peptide into a beta-hairpin induced by addition of a fragment results in creation of a coexisting state. Proteins, 66, 2006
2DX5	The complex structure between the mouse EAP45-GLUE domain and ubiquitin Descriptor: Ubiquitin, Vacuolar protein sorting protein 36 Authors: Hirano, S, Suzuki, N, Slagsvold, T, Kawasaki, M, Trambaiolo, D, Kato, R, Stenmark, H, Wakatsuki, S. Deposit date: 2006-08-24 Release date: 2006-10-10 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (3.35 Å) Cite: Structural basis of ubiquitin recognition by mammalian Eap45 GLUE domain Nat.Struct.Mol.Biol., 13, 2006
2DX6	Crystal structure of conserved hypothetical protein, TTHA0132 from Thermus thermophilus HB8 Descriptor: ACETATE ION, Hypothetical protein TTHA0132, ISOPROPYL ALCOHOL Authors: Kishishita, S, Murayama, K, Terada, T, Shirouzu, M, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-08-24 Release date: 2007-02-24 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Crystal structure of conserved hypothetical protein, TTHA0132 from Thermus thermophilus HB8 To be Published
2DX7	Crystal structure of Pyrococcus horikoshii OT3 aspartate racemase complex with citric acid Descriptor: CITRIC ACID, aspartate racemase Authors: Ohtaki, A, Arakawa, T, Iizuka, R, Odaka, M, Yohda, M. Deposit date: 2006-08-24 Release date: 2007-08-28 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure of aspartate racemase complexed with a dual substrate analogue, citric acid, and implications for the reaction mechanism. Proteins, 70, 2008
2DX8	Crystal Structure Analysis of the PHD domain of the Transcription Coactivator Pygophus Descriptor: Pygopus homolog 1, ZINC ION Authors: Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-08-24 Release date: 2007-05-15 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal Structure Analysis of the PHD Domain of the Transcription Coactivator Pygopus To be Published
2DXA	Crystal structure of trans editing enzyme ProX from E.coli Descriptor: CHLORIDE ION, Protein ybaK Authors: Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-08-25 Release date: 2007-02-25 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.58 Å) Cite: Crystal structure of trans editing enzyme ProX from E.coli To be Published
2DXB	Recombinant thiocyanate hydrolase comprising partially-modified cobalt centers Descriptor: COBALT (III) ION, PHOSPHATE ION, Thiocyanate hydrolase subunit alpha, ... Authors: Arakawa, T, Kawano, Y, Katayama, Y, Yohda, M, Odaka, M. Deposit date: 2006-08-25 Release date: 2007-08-28 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Structural Basis for Catalytic Activation of Thiocyanate Hydrolase Involving Metal-Ligated Cysteine Modification J.Am.Chem.Soc., 131, 2009
2DXC	Recombinant thiocyanate hydrolase, fully-matured form Descriptor: COBALT (III) ION, L(+)-TARTARIC ACID, Thiocyanate hydrolase subunit alpha, ... Authors: Arakawa, T, Kawano, Y, Katayama, Y, Yohda, M, Odaka, M. Deposit date: 2006-08-25 Release date: 2007-08-28 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural Basis for Catalytic Activation of Thiocyanate Hydrolase Involving Metal-Ligated Cysteine Modification J.Am.Chem.Soc., 131, 2009
2DXD	Crystal structure of nucleoside diphosphate kinase in complex with ATP analog Descriptor: ADENOSINE MONOPHOSPHATE, CHLORIDE ION, Nucleoside diphosphate kinase Authors: Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-08-25 Release date: 2007-02-25 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.77 Å) Cite: Crystal structure of nucleoside diphosphate kinase in complex with ATP analog To be Published
2DXE	Crystal structure of nucleoside diphosphate kinase in complex with GDP Descriptor: CHLORIDE ION, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... Authors: Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-08-25 Release date: 2007-02-25 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal structure of nucleoside diphosphate kinase in complex with GDP To be Published
2DXF	Crystal structure of nucleoside diphosphate kinase in complex with GTP analog Descriptor: CHLORIDE ION, Nucleoside diphosphate kinase, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER Authors: Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-08-25 Release date: 2007-02-25 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal structure of nucleoside diphosphate kinase in complex with GTP analog To be Published
2DXI	2.2 A crystal structure of glutamyl-tRNA synthetase from Thermus thermophilus complexed with tRNA(Glu), ATP, and L-glutamol Descriptor: (4S)-4-AMINO-5-HYDROXYPENTANOIC ACID, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-08-28 Release date: 2006-10-31 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural bases of transfer RNA-dependent amino acid recognition and activation by glutamyl-tRNA synthetase Structure, 14, 2006
2DXL	Glycerophosphodiesterase from Enterobacter aerogenes Descriptor: COBALT (II) ION, Phosphohydrolase Authors: Jackson, C.J, Carr, P.D, Ollis, D.L. Deposit date: 2006-08-28 Release date: 2007-05-22 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (3 Å) Cite: The structure and function of a novel glycerophosphodiesterase from Enterobacter aerogenes J.Mol.Biol., 367, 2007
2DXM	Neutron Structure Analysis of Deoxy Human Hemoglobin Descriptor: Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE Authors: Morimoto, Y. Deposit date: 2006-08-28 Release date: 2007-12-04 Last modified: 2024-04-03 Method: NEUTRON DIFFRACTION (2.1 Å) Cite: Protonation states of buried histidine residues in human deoxyhemoglobin revealed by neutron crystallography. J.Am.Chem.Soc., 129, 2007
2DXN	Glycerophosphodiesterase from Enterobacter aerogenes Descriptor: Phosphohydrolase, ZINC ION Authors: Jackson, C.J, Carr, P.D, Ollis, D.L. Deposit date: 2006-08-28 Release date: 2007-05-22 Last modified: 2019-12-11 Method: X-RAY DIFFRACTION (2.92 Å) Cite: The structure and function of a novel glycerophosphodiesterase from Enterobacter aerogenes J.Mol.Biol., 367, 2007
2DXP	Crystal structure of the complex of the archaeal sulfolobus PTP-fold phosphatase with phosphopeptides A-(p)Y-R Descriptor: A(PTR)R, Sulfolobus solfataricus protein tyrosine phosphatase Authors: Chu, H.M, Wang, A.H.J. Deposit date: 2006-08-29 Release date: 2007-03-13 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Enzyme-substrate interactions revealed by the crystal structures of the archaeal Sulfolobus PTP-fold phosphatase and its phosphopeptide complexes Proteins, 66, 2006
2DXQ	Putative acetyltransferase from Agrobacterium tumefaciens str. C58 Descriptor: Acetyltransferase, PHOSPHATE ION Authors: Binkowski, T.A, Xu, X, Edwards, A, Savchenko, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2006-08-30 Release date: 2006-09-27 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Putative acetyltransferase from Agrobacterium tumefaciens str. C58 To be published
2DXR	Crystal structure of the complex formed between C-terminal half of bovine lactoferrin and sorbitol at 2.85 A resolution Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CARBONATE ION, FE (III) ION, ... Authors: Mir, R, Prem kumar, R, Sinha, M, Singh, N, Sharma, S, Bhushan, A, Kaur, P, Singh, T.P. Deposit date: 2006-08-30 Release date: 2006-09-12 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Crystal structure of the complex formed between C-terminal half of bovine lactoferrin and sorbitol at 2.85 A resolution To be Published
2DXS	Crystal structure of HCV NS5B RNA polymerase complexed with a tetracyclic inhibitor Descriptor: Genome polyprotein, N-[(13-CYCLOHEXYL-6,7-DIHYDROINDOLO[1,2-D][1,4]BENZOXAZEPIN-10-YL)CARBONYL]-2-METHYL-L-ALANINE Authors: Adachi, T, Tsuruha, J, Doi, S, Murase, K, Ikegashira, K, Watanabe, S, Uehara, K, Orita, T, Nomura, A, Kamada, M. Deposit date: 2006-08-30 Release date: 2006-12-26 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Discovery of Conformationally Constrained Tetracyclic Compounds as Potent Hepatitis C Virus NS5B RNA Polymerase Inhibitors J.Med.Chem., 49, 2006
2DXT	Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Complexed with ATP and Biotin, Mutation D104A Descriptor: ADENOSINE-5'-TRIPHOSPHATE, BIOTIN, biotin--[acetyl-CoA-carboxylase] ligase Authors: Bagautdinov, B, Matsuura, Y, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-08-30 Release date: 2007-03-01 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Ligand Structures Of Biotin Protein Ligase From Pyrococcus Horikoshii Ot3 To be Published
2DXU	Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Complexed with Biotinyl-5'-AMP, Mutation R48A Descriptor: BIOTINYL-5-AMP, biotin--[acetyl-CoA-carboxylase] ligase Authors: Bagautdinov, B, Taketa, M, Matsuura, Y, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-08-30 Release date: 2007-03-01 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.28 Å) Cite: Protein biotinylation visualized by a complex structure of biotin protein ligase with a substrate J.Biol.Chem., 283, 2008
2DXV	Crystal structure of Glu54 to His mutant of Diphthine synthase Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, ... Authors: Mizutani, H, Matsuura, Y, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-08-31 Release date: 2007-03-01 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of diphthine synthase from Pyrococcus horikoshii OT3 To be Published
2DXW	Crystal structure of Glu54 to Lys mutant of Diphthine synthase Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, ... Authors: Mizutani, H, Matsuura, Y, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-08-31 Release date: 2007-03-01 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal structure of diphthine synthase from Pyrococcus horikoshii OT3 To be Published

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