PDB: 378 resultsInfo pagesStatus searchChemie searchBIRD

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8GLV	96-nm repeat unit of doublet microtubules from Chlamydomonas reinhardtii flagella Descriptor: 28 kDa inner dynein arm light chain, axonemal, AAA+ ATPase domain-containing protein, ... Authors: Walton, T, Brown, A. Deposit date: 2023-03-23 Release date: 2023-05-31 Last modified: 2024-12-25 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Axonemal structures reveal mechanoregulatory and disease mechanisms. Nature, 618, 2023
3JA1	Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Li, W, Liu, Z, Koripella, R.K, Langlois, R, Sanyal, S, Frank, J. Deposit date: 2015-03-30 Release date: 2015-07-01 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Activation of GTP hydrolysis in mRNA-tRNA translocation by elongation factor G. Sci Adv, 1, 2015
4V9C	Allosteric control of the ribosome by small-molecule antibiotics Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Cate, J.H.D, Pulk, A, Blanchard, S.C, Wang, L, Feldman, M.B, Wasserman, M.R, Altman, R. Deposit date: 2012-07-25 Release date: 2014-07-09 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Allosteric control of the ribosome by small-molecule antibiotics. Nat.Struct.Mol.Biol., 19, 2012
4U25	Crystal structure of the E. coli ribosome bound to virginiamycin M1. Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Noeske, J, Huang, J, Olivier, N.B, Giacobbe, R.A, Zambrowski, M, Cate, J.H.D. Deposit date: 2014-07-16 Release date: 2014-07-30 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Synergy of streptogramin antibiotics occurs independently of their effects on translation. Antimicrob.Agents Chemother., 58, 2014
4U1V	Crystal structure of the E. coli ribosome bound to linopristin. Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Noeske, J, Huang, J, Olivier, N.B, Giacobbe, R.A, Zambrowski, M, Cate, J.H.D. Deposit date: 2014-07-16 Release date: 2014-07-30 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (3 Å) Cite: Synergy of streptogramin antibiotics occurs independently of their effects on translation. Antimicrob.Agents Chemother., 58, 2014
4V9D	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Dunkle, J.A, Wang, L, Feldman, M.B, Pulk, A, Chen, V.B, Kapral, G.J, Noeske, J, Richardson, J.S, Blanchard, S.C, Cate, J.H.D. Deposit date: 2012-07-31 Release date: 2014-07-09 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3 Å) Cite: Structures of the bacterial ribosome in classical and hybrid states of tRNA binding. Science, 332, 2011
9E78	48-nm repeat of the Leishmania tarentolae doublet microtubule Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ArcMAP1, ArcMAP2, ... Authors: Doran, M.H, Ren, P, Hoog, J.L, Brown, A. Deposit date: 2024-11-01 Release date: 2025-03-12 Last modified: 2025-03-26 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Evolutionary adaptations of doublet microtubules in trypanosomatid parasites. Science, 387, 2025
8OTZ	48-nm repeat of the native axonemal doublet microtubule from bovine sperm Descriptor: ATP6V1F neighbor, CFAP97 domain containing 1, Chromosome 13 C20orf85 homolog, ... Authors: Leung, M.R, Zeng, J, Zhang, R, Zeev-Ben-Mordehai, T. Deposit date: 2023-04-21 Release date: 2023-11-22 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Structural specializations of the sperm tail. Cell, 186, 2023
9QQB	Quaternary complex of a translating ribosome, NAC, NMT1, and NatA Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S19, ... Authors: Echeverria, B, Jaskolowski, M, Scaiola, A, Ban, N. Deposit date: 2025-03-31 Release date: 2025-07-16 Last modified: 2025-07-23 Method: ELECTRON MICROSCOPY (3.43 Å) Cite: Mechanism of cotranslational protein N-myristoylation in human cells. Mol.Cell, 2025
7RR5	Structure of ribosomal complex bound with Rbg1/Tma46 Descriptor: 18S rRNA, 25S rRNA, 40S ribosomal protein S0, ... Authors: Zeng, F, Li, X, Pires-Alves, M, Chen, X, Hawk, C.W, Jin, H. Deposit date: 2021-08-09 Release date: 2021-11-10 Last modified: 2024-11-20 Method: ELECTRON MICROSCOPY (3.23 Å) Cite: Conserved heterodimeric GTPase Rbg1/Tma46 promotes efficient translation in eukaryotic cells. Cell Rep, 37, 2021
8G3D	48-nm doublet microtubule from Tetrahymena thermophila strain K40R Descriptor: B2B3_fMIP, B5B6_fMIP, CFAM166A, ... Authors: Black, C.S, Kubo, S, Yang, S.K, Bui, K.H. Deposit date: 2023-02-07 Release date: 2023-06-14 Last modified: 2024-10-30 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Native doublet microtubules from Tetrahymena thermophila reveal the importance of outer junction proteins. Nat Commun, 14, 2023
9QQA	Ternary complex of translating ribosome, NAC and NMT1 Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S19, ... Authors: Echeverria, B, Jaskolowski, M, Scaiola, A, Ban, N. Deposit date: 2025-03-31 Release date: 2025-07-16 Last modified: 2025-07-23 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Mechanism of cotranslational protein N-myristoylation in human cells. Mol.Cell, 2025
9Q87	Principles of ion binding to RNA inferred from the analysis of a 1.55 Angstrom resolution bacterial ribosome structure - Part I: Mg2+ Descriptor: 16S rRNA, 23S rRNA, 5S rRNA, ... Authors: Leonarski, f, Henning-Knechtel, A, Kirmizialtin, S, Ennifar, E, Auffinger, P. Deposit date: 2025-02-23 Release date: 2025-05-14 Method: ELECTRON MICROSCOPY (1.55 Å) Cite: Principles of ion binding to RNA inferred from the analysis of a 1.55 Angs. resolution bacterial ribosome structure - Part I: Mg2+. Nucleic Acids Res, 2024
4YBB	High-resolution structure of the Escherichia coli ribosome Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 1,4-DIAMINOBUTANE, ... Authors: Noeske, J, Wasserman, M.R, Terry, D.S, Altman, R.B, Blanchard, S.C, Cate, J.H.D. Deposit date: 2015-02-18 Release date: 2015-03-18 Last modified: 2025-03-19 Method: X-RAY DIFFRACTION (2.1 Å) Cite: High-resolution structure of the Escherichia coli ribosome. Nat.Struct.Mol.Biol., 22, 2015
6TBV	Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2) Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Herrero del Valle, A, Innis, C.A. Deposit date: 2019-11-04 Release date: 2020-01-01 Last modified: 2025-03-12 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Ornithine capture by a translating ribosome controls bacterial polyamine synthesis. Nat Microbiol, 5, 2020
6TC3	Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1) Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Innis, C.A, Herrero del Valle, A. Deposit date: 2019-11-05 Release date: 2020-01-01 Last modified: 2025-03-12 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Ornithine capture by a translating ribosome controls bacterial polyamine synthesis. Nat Microbiol, 5, 2020
3JAN	Structure of the scanning state of the mammalian SRP-ribosome complex Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, ... Authors: Voorhees, R.M, Hegde, R.S. Deposit date: 2015-06-17 Release date: 2015-08-05 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (3.75 Å) Cite: Structures of the scanning and engaged states of the mammalian SRP-ribosome complex. Elife, 4, 2015
8UTJ	E. coli 70S ribosome with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the 0 frame Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S11, ... Authors: Kimbrough, E.M, Dunham, C.M, Nguyen, H.A. Deposit date: 2023-10-31 Release date: 2025-07-09 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting Nat Commun, 2025
8EKC	Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA Descriptor: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... Authors: Rybak, M.Y, Gagnon, M.G. Deposit date: 2022-09-20 Release date: 2022-12-07 Last modified: 2025-03-19 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Insights into the molecular mechanism of translation inhibition by the ribosome-targeting antibiotic thermorubin. Nucleic Acids Res., 51, 2023
8B0X	Translating 70S ribosome in the unrotated state (P and E, tRNAs) Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Fromm, S.A, O'Connor, K.M, Purdy, M, Bhatt, P.R, Loughran, G, Atkins, J.F, Jomaa, A, Mattei, S. Deposit date: 2022-09-08 Release date: 2022-11-30 Last modified: 2025-04-16 Method: ELECTRON MICROSCOPY (1.55 Å) Cite: The translating bacterial ribosome at 1.55 angstrom resolution generated by cryo-EM imaging services. Nat Commun, 14, 2023
9NL5	E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Singh, S, Hunt, J.F. Deposit date: 2025-03-02 Release date: 2025-04-02 Method: ELECTRON MICROSCOPY (3 Å) Cite: E. coli pre-elongation complex without an A-site tRNA with EttA-EQ2 To Be Published
9NLJ	E.coli Initiation complex with Uup-EQ2 Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Singh, S, Hunt, J.F. Deposit date: 2025-03-03 Release date: 2025-04-02 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: E.coli Initiation complex with Uup-EQ2 To Be Published
9NKL	E. coli 70S initiation complex Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Singh, S, Hunt, J.F. Deposit date: 2025-03-01 Release date: 2025-04-02 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: E. coli 70S initiation complex To Be Published
6BY1	E. coli pH03H9 complex Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Amiri, H, Noller, H.F. Deposit date: 2017-12-19 Release date: 2019-02-27 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (3.94 Å) Cite: Structural evidence for product stabilization by the ribosomal mRNA helicase. Rna, 25, 2019
9GR1	E. coli 70S-TEC complex in delivery state Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S16, ... Authors: Webster, M.W, Weixlbaumer, A. Deposit date: 2024-09-10 Release date: 2024-11-20 Last modified: 2025-03-12 Method: ELECTRON MICROSCOPY (3.17 Å) Cite: Molecular basis of mRNA delivery to the bacterial ribosome. Science, 386, 2024

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