Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5WGG
DownloadVisualize
BU of 5wgg by Molmil
Structural Insights into Thioether Bond Formation in the Biosynthesis of Sactipeptides
Descriptor: CALCIUM ION, CteA, IRON/SULFUR CLUSTER, ...
Authors:Grove, T.L, Himes, P, Bowers, A, Bonanno, J.B, Almo, S.C.
Deposit date:2017-07-14
Release date:2017-07-26
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.036 Å)
Cite:Structural Insights into Thioether Bond Formation in the Biosynthesis of Sactipeptides.
J. Am. Chem. Soc., 139, 2017
5WH8
DownloadVisualize
BU of 5wh8 by Molmil
Cellulase Cel5C_n
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, PENTAETHYLENE GLYCOL, ...
Authors:Koropatkin, N.M, Pope, P.B, Naas, A.E.
Deposit date:2017-07-15
Release date:2018-03-14
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:"Candidatus Paraporphyromonas polyenzymogenes" encodes multi-modular cellulases linked to the type IX secretion system.
Microbiome, 6, 2018
6SYQ
DownloadVisualize
BU of 6syq by Molmil
ASR Alternansucrase in complex with isomaltotriose
Descriptor: Alternansucrase, CALCIUM ION, alpha-D-glucopyranose, ...
Authors:Cioci, G, Molina, M, Moulis, C, Remaud-Simeon, M.
Deposit date:2019-09-30
Release date:2020-06-17
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3 Å)
Cite:A specific oligosaccharide-binding site in the alternansucrase catalytic domain mediates alternan elongation.
J.Biol.Chem., 295, 2020
5WHZ
DownloadVisualize
BU of 5whz by Molmil
PGDM1400-10E8v4 CODV Fab
Descriptor: Anti-HIV CODV-Fab Heavy chain, Anti-HIV CODV-Fab Light chain
Authors:Lord, D.M, Wei, R.R.
Deposit date:2017-07-18
Release date:2017-10-11
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.549 Å)
Cite:Trispecific broadly neutralizing HIV antibodies mediate potent SHIV protection in macaques.
Science, 358, 2017
4N2K
DownloadVisualize
BU of 4n2k by Molmil
Crystal structure of Protein Arginine Deiminase 2 (Q350A, 0 mM Ca2+)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, GLYCEROL, ...
Authors:Slade, D.J, Zhang, X, Fang, P, Dreyton, C.J, Zhang, Y, Gross, M.L, Guo, M, Coonrod, S.A, Thompson, P.R.
Deposit date:2013-10-05
Release date:2015-02-04
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Protein arginine deiminase 2 binds calcium in an ordered fashion: implications for inhibitor design.
Acs Chem.Biol., 10, 2015
5WIA
DownloadVisualize
BU of 5wia by Molmil
Crystal structure of the segment, GNNSYS, from the low complexity domain of TDP-43, residues 370-375
Descriptor: TAR DNA-binding protein 43
Authors:Guenther, E.L, Trinh, H, Sawaya, M.R, Eisenberg, D.S.
Deposit date:2017-07-18
Release date:2018-04-25
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.002 Å)
Cite:Atomic structures of TDP-43 LCD segments and insights into reversible or pathogenic aggregation.
Nat. Struct. Mol. Biol., 25, 2018
4N36
DownloadVisualize
BU of 4n36 by Molmil
Structure of langerin CRD I313 D288 complexed with Me-GlcNAc
Descriptor: C-type lectin domain family 4 member K, CALCIUM ION, MAGNESIUM ION, ...
Authors:Feinberg, H, Rowntree, T.J.W, Tan, S.L.W, Drickamer, K, Weis, W.I, Taylor, M.E.
Deposit date:2013-10-06
Release date:2013-11-20
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Common polymorphisms in human langerin change specificity for glycan ligands.
J.Biol.Chem., 288, 2013
4N3N
DownloadVisualize
BU of 4n3n by Molmil
Crystal structure of eukaryotic translation initiation factor eIF5B (517-1116) from Chaetomium thermophilum, apo form
Descriptor: Eukaryotic translation initiation factor 5B-like protein, eIF5B(517-C), LACTIC ACID
Authors:Kuhle, B, Ficner, R.
Deposit date:2013-10-07
Release date:2014-07-09
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.752 Å)
Cite:eIF5B employs a novel domain release mechanism to catalyze ribosomal subunit joining.
Embo J., 33, 2014
4N43
DownloadVisualize
BU of 4n43 by Molmil
Human enterovirus 71 uncoating intermediate captured at atomic resolution
Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3
Authors:Chen, R, Lyu, K.
Deposit date:2013-10-08
Release date:2014-02-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.8011 Å)
Cite:Human enterovirus 71 uncoating captured at atomic resolution.
J.Virol., 88, 2014
5WKD
DownloadVisualize
BU of 5wkd by Molmil
Crystal structure of the segment, GNNQGSN, from the low complexity domain of TDP-43, residues 300-306
Descriptor: TAR DNA-binding protein 43
Authors:Guenther, E.L, Trinh, H, Sawaya, M.R, Cascio, D, Eisenberg, D.S.
Deposit date:2017-07-25
Release date:2018-04-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Atomic structures of TDP-43 LCD segments and insights into reversible or pathogenic aggregation.
Nat. Struct. Mol. Biol., 25, 2018
5WKF
DownloadVisualize
BU of 5wkf by Molmil
D30 TCR in complex with HLA-A*11:01-GTS1
Descriptor: Beta-2-microglobulin, D30 TCR beta chain, GTS1 peptide, ...
Authors:Gras, S, Rossjohn, J.
Deposit date:2017-07-25
Release date:2017-09-20
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Germline bias dictates cross-serotype reactivity in a common dengue-virus-specific CD8(+) T cell response.
Nat. Immunol., 18, 2017
5WKL
DownloadVisualize
BU of 5wkl by Molmil
1.85 A resolution structure of MERS 3CL protease in complex with piperidine-based peptidomimetic inhibitor 17
Descriptor: (1R,2S)-2-{[N-({[4-benzyl-1-(tert-butoxycarbonyl)piperidin-4-yl]oxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, (1S,2S)-2-{[N-({[4-benzyl-1-(tert-butoxycarbonyl)piperidin-4-yl]oxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, Orf1a protein
Authors:Lovell, S, Battaile, K.P, Mehzabeen, N, Kankanamalage, A.C.G, Kim, Y, Rathnayake, A.D, Chang, K.O, Groutas, W.C.
Deposit date:2017-07-25
Release date:2018-04-04
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure-guided design of potent and permeable inhibitors of MERS coronavirus 3CL protease that utilize a piperidine moiety as a novel design element.
Eur J Med Chem, 150, 2018
4N0Z
DownloadVisualize
BU of 4n0z by Molmil
Crystal structure of cisplatin bound to a plasmodium falciparum glutaredoxin 1 (PfGrx1)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 3[N-MORPHOLINO]PROPANE SULFONIC ACID, Cisplatin, ...
Authors:Yogavel, M, Sharma, A.
Deposit date:2013-10-03
Release date:2014-10-08
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Interaction of Cisplatin with plasmodium falciparum Glutaredoxin 1
To be Published
4N6E
DownloadVisualize
BU of 4n6e by Molmil
Crystal structure of Amycolatopsis orientalis BexX/CysO complex
Descriptor: Putative thiosugar synthase, SULFATE ION, ThiS/MoaD family protein
Authors:Zhang, X, Zhang, Y, Kinsland, C, Sasaki, E, Sun, H.G, Lu, M.J, Liu, T, Ou, A, Li, J, Chen, Y, Liu, H, Ealick, S.E.
Deposit date:2013-10-11
Release date:2014-05-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Co-opting sulphur-carrier proteins from primary metabolic pathways for 2-thiosugar biosynthesis.
Nature, 509, 2014
5WKH
DownloadVisualize
BU of 5wkh by Molmil
D30 TCR in complex with HLA-A*11:01-GTS3
Descriptor: Beta-2-microglobulin, D30 TCR beta chain, GTS3 peptide, ...
Authors:Gras, S, Rossjohn, J.
Deposit date:2017-07-25
Release date:2017-09-20
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Germline bias dictates cross-serotype reactivity in a common dengue-virus-specific CD8(+) T cell response.
Nat. Immunol., 18, 2017
4N1T
DownloadVisualize
BU of 4n1t by Molmil
Structure of human MTH1 in complex with TH287
Descriptor: 6-(2,3-dichlorophenyl)-N~4~-methylpyrimidine-2,4-diamine, 7,8-dihydro-8-oxoguanine triphosphatase, SULFATE ION
Authors:Berntsson, R.P.-A, Jemth, A, Gustafsson, R, Svensson, L.M, Helleday, T, Stenmark, P.
Deposit date:2013-10-04
Release date:2014-04-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:MTH1 inhibition eradicates cancer by preventing sanitation of the dNTP pool.
Nature, 508, 2014
4N28
DownloadVisualize
BU of 4n28 by Molmil
Crystal structure of Protein Arginine Deiminase 2 (1 mM Ca2+)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Slade, D.J, Zhang, X, Fang, P, Dreyton, C.J, Zhang, Y, Gross, M.L, Guo, M, Coonrod, S.A, Thompson, P.R.
Deposit date:2013-10-04
Release date:2015-02-04
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.879 Å)
Cite:Protein arginine deiminase 2 binds calcium in an ordered fashion: implications for inhibitor design.
Acs Chem.Biol., 10, 2015
5WLH
DownloadVisualize
BU of 5wlh by Molmil
Crystal structure of LbaCas13a H328A (C2c2) bound to pre-crRNA (24-nt spacer)
Descriptor: GLYCEROL, IODIDE ION, LbaCas13a H328A (C2c2), ...
Authors:Knott, G.J, Doudna, J.A.
Deposit date:2017-07-26
Release date:2017-09-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.80001032 Å)
Cite:Guide-bound structures of an RNA-targeting A-cleaving CRISPR-Cas13a enzyme.
Nat. Struct. Mol. Biol., 24, 2017
5WLU
DownloadVisualize
BU of 5wlu by Molmil
Carbonic Anhydrase IX-mimic in complex with aryloxy-2-hydroxypropylammine sulfonamide
Descriptor: 4-{(2R)-2-hydroxy-3-[(propan-2-yl)amino]propoxy}-N-[2-(4-sulfamoylphenyl)ethyl]benzamide, Carbonic Anhydrase IX-mimic, ZINC ION
Authors:Lomelino, C.L, Andring, J.T, McKenna, R.
Deposit date:2017-07-27
Release date:2018-08-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Hybrids for multitargeted therapy Beta Adrenergic Receptor modulators CAIs
To Be Published
5WM4
DownloadVisualize
BU of 5wm4 by Molmil
Crystal Structure of CahJ in Complex with 6-Methylsalicyl Adenylate
Descriptor: 9-(5-O-{(S)-hydroxy[(2-hydroxy-6-methylbenzene-1-carbonyl)oxy]phosphoryl}-alpha-L-lyxofuranosyl)-9H-purin-6-amine, ACETATE ION, GLYCEROL, ...
Authors:Sikkema, A.P, Smith, J.L.
Deposit date:2017-07-28
Release date:2018-05-23
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.781 Å)
Cite:A Defined and Flexible Pocket Explains Aryl Substrate Promiscuity of the Cahuitamycin Starter Unit-Activating Enzyme CahJ.
Chembiochem, 19, 2018
5WMO
DownloadVisualize
BU of 5wmo by Molmil
Crystal Structure of HLA-B7 in complex with RPP, an EBV peptide
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, B-7 alpha chain, ...
Authors:Gras, S, Rossjohn, J.
Deposit date:2017-07-30
Release date:2018-06-06
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Inability To Detect Cross-Reactive Memory T Cells Challenges the Frequency of Heterologous Immunity among Common Viruses.
J. Immunol., 200, 2018
5WN0
DownloadVisualize
BU of 5wn0 by Molmil
APE1 exonuclease substrate complex with a C/G match
Descriptor: DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(*GP*GP*AP*TP*CP*CP*GP*TP*CP*GP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(P*TP*CP*GP*AP*CP*GP*GP*AP*TP*CP*C)-3'), ...
Authors:Freudenthal, B.D, Whitaker, A.M.
Deposit date:2017-07-31
Release date:2018-02-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular snapshots of APE1 proofreading mismatches and removing DNA damage.
Nat Commun, 9, 2018
5WNS
DownloadVisualize
BU of 5wns by Molmil
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Descriptor: 16S Ribosomal RNA rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:DeMirci, H.
Deposit date:2017-08-01
Release date:2018-02-21
Last modified:2025-02-12
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:2'-O-methylation in mRNA disrupts tRNA decoding during translation elongation.
Nat. Struct. Mol. Biol., 25, 2018
5WN9
DownloadVisualize
BU of 5wn9 by Molmil
Structure of antibody 2D10 bound to the central conserved region of RSV G
Descriptor: Major surface glycoprotein G, scFv 2D10
Authors:Fedechkin, S.O, George, N.L, Wolff, J.T, Kauvar, L.M, DuBois, R.M.
Deposit date:2017-07-31
Release date:2018-03-14
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.551 Å)
Cite:Structures of respiratory syncytial virus G antigen bound to broadly neutralizing antibodies.
Sci Immunol, 3, 2018
5WNN
DownloadVisualize
BU of 5wnn by Molmil
Crystal structure of Phosphate-binding protein PstS protein from Burkholderia pseudomallei
Descriptor: PHOSPHATE ION, POTASSIUM ION, Phosphate-binding protein PstS
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2017-08-01
Release date:2017-08-30
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of Phosphate-binding protein PstS protein from Burkholderia pseudomallei
To Be Published

243911

PDB entries from 2025-10-29

PDB statisticsPDBj update infoContact PDBjnumon