PDB: 82129 resultsInfo pagesStatus searchChemie searchBIRD

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8III	Complex form of MsmUdgX H109C mutant and uracil- obtained from uracil DNA (ttUtt) post its cleavage by MsmUdgX H109C Descriptor: GLYCEROL, IRON/SULFUR CLUSTER, Type-4 uracil-DNA glycosylase, ... Authors: Aroli, S. Deposit date: 2023-02-24 Release date: 2023-06-21 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.72 Å) Cite: Mutational and structural analyses of UdgX: insights into the active site pocket architecture and its evolution. Nucleic Acids Res., 51, 2023
8IIH	H109C mutant of uracil DNA glycosylase X Descriptor: IRON/SULFUR CLUSTER, Type-4 uracil-DNA glycosylase Authors: Aroli, S. Deposit date: 2023-02-24 Release date: 2023-06-21 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.13 Å) Cite: Mutational and structural analyses of UdgX: insights into the active site pocket architecture and its evolution. Nucleic Acids Res., 51, 2023
8IIG	Complex form of MsmUdgX H109A mutant and uracil- obtained from uracil DNA (ttUtt) post its cleavage by UdgX H109A Descriptor: IRON/SULFUR CLUSTER, Type-4 uracil-DNA glycosylase, URACIL Authors: Aroli, S. Deposit date: 2023-02-24 Release date: 2023-06-21 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Mutational and structural analyses of UdgX: insights into the active site pocket architecture and its evolution. Nucleic Acids Res., 51, 2023
8IIF	H109A mutant of uracil DNA glycosylase X Descriptor: GLYCEROL, IRON/SULFUR CLUSTER, Type-4 uracil-DNA glycosylase Authors: Aroli, S. Deposit date: 2023-02-24 Release date: 2023-06-21 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Mutational and structural analyses of UdgX: insights into the active site pocket architecture and its evolution. Nucleic Acids Res., 51, 2023
8IIE	Complex form of MsmUdgX and uracil- obtained from uracil DNA (ttUtt) post its cleavage by MsmUdgX Descriptor: IRON/SULFUR CLUSTER, Type-4 uracil-DNA glycosylase, URACIL Authors: Aroli, S. Deposit date: 2023-02-24 Release date: 2023-06-21 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.67 Å) Cite: Mutational and structural analyses of UdgX: insights into the active site pocket architecture and its evolution. Nucleic Acids Res., 51, 2023
8IIA	Crystal structure of the oligomeric state of the extracellular domain of human myelin protein zero(MPZ/P0) Descriptor: GLYCEROL, Myelin protein P0 Authors: Sakakura, M, Tanabe, M, Mio, K. Deposit date: 2023-02-24 Release date: 2023-08-30 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.09 Å) Cite: Structural bases for the Charcot-Marie-Tooth disease induced by single amino acid substitutions of myelin protein zero. Structure, 31, 2023
8II0	FACTOR INHIBITING HIF-1 ALPHA in complex with (5-(3-(3-chlorophenyl)isoxazol-5-yl)-3-hydroxypicolinoyl)glycine Descriptor: 2-[[5-[3-(3-chlorophenyl)-1,2-oxazol-5-yl]-3-oxidanyl-pyridin-2-yl]carbonylamino]ethanoic acid, GLYCEROL, Hypoxia-inducible factor 1-alpha inhibitor, ... Authors: Nakashima, Y, Corner, T, Zhang, X, Schofield, C.J. Deposit date: 2023-02-24 Release date: 2024-02-28 Last modified: 2024-07-10 Method: X-RAY DIFFRACTION (2.04 Å) Cite: A Small-Molecule Inhibitor of Factor Inhibiting HIF Binding to a Tyrosine-flip Pocket for the Treatment of Obesity. Angew.Chem.Int.Ed.Engl., 2024
8IHY	X-ray crystal structure of Q387E mutant of endo-1,4-beta glucanase from Eisenia fetida Descriptor: CALCIUM ION, Endoglucanase, GLYCEROL, ... Authors: Kuroki, C, Hirano, Y, Nakazawa, M, Sakamoto, T, Tamada, T, Ueda, M. Deposit date: 2023-02-24 Release date: 2023-12-06 Method: X-RAY DIFFRACTION (1.6 Å) Cite: A single mutation Asp43Arg was increased 2.5-fold the catalytic activity and maintained the stability of cold-adapted endo-1,4-beta glucanase (Ef-EG2) from Eisenia fetida. Curr Res Biotechnol, 5, 2023
8IHX	X-ray crystal structure of N372D mutant of endo-1,4-beta glucanase from Eisenia fetida Descriptor: CALCIUM ION, Endoglucanase, GLYCEROL, ... Authors: Kuroki, C, Hirano, Y, Nakazawa, M, Sakamoto, T, Tamada, T, Ueda, M. Deposit date: 2023-02-24 Release date: 2023-12-06 Method: X-RAY DIFFRACTION (1.6 Å) Cite: A single mutation Asp43Arg was increased 2.5-fold the catalytic activity and maintained the stability of cold-adapted endo-1,4-beta glucanase (Ef-EG2) from Eisenia fetida. Curr Res Biotechnol, 5, 2023
8IHW	X-ray crystal structure of D43R mutant of endo-1,4-beta glucanase from Eisenia fetida Descriptor: CALCIUM ION, Endoglucanase, GLYCEROL, ... Authors: Kuroki, C, Hirano, Y, Nakazawa, M, Sakamoto, T, Tamada, T, Ueda, M. Deposit date: 2023-02-24 Release date: 2023-12-06 Method: X-RAY DIFFRACTION (1.7 Å) Cite: A single mutation Asp43Arg was increased 2.5-fold the catalytic activity and maintained the stability of cold-adapted endo-1,4-beta glucanase (Ef-EG2) from Eisenia fetida. Curr Res Biotechnol, 5, 2023
8IHT	Rpd3S bound to the nucleosome Descriptor: CALCIUM ION, Chromatin modification-related protein EAF3, DNA (164-MER), ... Authors: Zhang, Y, Gang, C. Deposit date: 2023-02-23 Release date: 2024-03-20 Method: ELECTRON MICROSCOPY (3.72 Å) Cite: Structural basis for nucleosome binding and catalysis by the yeast Rpd3S/HDAC holoenzyme. Cell Res., 33, 2023
8IHS	Cryo-EM structure of ochratoxin A-detoxifying amidohydrolase ADH3 in complex with ochratoxin A Descriptor: (2~{S})-2-[[(3~{R})-5-chloranyl-3-methyl-8-oxidanyl-1-oxidanylidene-3,4-dihydroisochromen-7-yl]carbonylamino]-3-phenyl-propanoic acid, Amidohydrolase family protein, ZINC ION Authors: Dai, L.H, Niu, D, Huang, J.-W, Li, X, Shen, P.P, Li, H, Hu, Y.M, Yang, Y, Chen, C.-C, Guo, R.-T. Deposit date: 2023-02-23 Release date: 2023-08-30 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: Cryo-EM structure and rational engineering of a superefficient ochratoxin A-detoxifying amidohydrolase. J Hazard Mater, 458, 2023
8IHN	Cryo-EM structure of the Rpd3S core complex Descriptor: CALCIUM ION, Chromatin modification-related protein EAF3, Histone H3, ... Authors: Zhang, Y, Gang, C. Deposit date: 2023-02-23 Release date: 2024-03-20 Method: ELECTRON MICROSCOPY (3.37 Å) Cite: Structural basis for nucleosome binding and catalysis by the yeast Rpd3S/HDAC holoenzyme. Cell Res., 33, 2023
8IHL	Overlapping tri-nucleosome Descriptor: DNA (353-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... Authors: Nishimura, M, Fujii, T, Tanaka, H, Maehara, K, Nozawa, K, Takizawa, Y, Ohkawa, Y, Kurumizaka, H. Deposit date: 2023-02-23 Release date: 2024-01-17 Last modified: 2024-01-24 Method: ELECTRON MICROSCOPY (7.64 Å) Cite: Genome-wide mapping and cryo-EM structural analyses of the overlapping tri-nucleosome composed of hexasome-hexasome-octasome moieties. Commun Biol, 7, 2024
8IHK	Cryo-EM structure of HCA3-Gi complex with acifran (local) Descriptor: (5~{S})-5-methyl-4-oxidanylidene-5-phenyl-furan-2-carboxylic acid, Soluble cytochrome b562,Hydroxycarboxylic acid receptor 3 Authors: Suzuki, S, Nishikawa, K, Suzuki, H, Fujiyoshi, Y. Deposit date: 2023-02-22 Release date: 2023-08-30 Last modified: 2023-12-06 Method: ELECTRON MICROSCOPY (3.21 Å) Cite: Structural basis of hydroxycarboxylic acid receptor signaling mechanisms through ligand binding. Nat Commun, 14, 2023
8IHJ	Cryo-EM structure of HCA3-Gi complex with acifran Descriptor: (5~{S})-5-methyl-4-oxidanylidene-5-phenyl-furan-2-carboxylic acid, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ... Authors: Suzuki, S, Nishikawa, K, Suzuki, H, Fujiyoshi, Y. Deposit date: 2023-02-22 Release date: 2023-08-30 Last modified: 2023-12-06 Method: ELECTRON MICROSCOPY (3.07 Å) Cite: Structural basis of hydroxycarboxylic acid receptor signaling mechanisms through ligand binding. Nat Commun, 14, 2023
8IHI	Cryo-EM structure of HCA2-Gi complex with acifran Descriptor: (5~{S})-5-methyl-4-oxidanylidene-5-phenyl-furan-2-carboxylic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ... Authors: Suzuki, S, Nishikawa, K, Suzuki, H, Fujiyoshi, Y. Deposit date: 2023-02-22 Release date: 2023-08-30 Last modified: 2023-12-06 Method: ELECTRON MICROSCOPY (3.11 Å) Cite: Structural basis of hydroxycarboxylic acid receptor signaling mechanisms through ligand binding. Nat Commun, 14, 2023
8IHH	Cryo-EM structure of HCA2-Gi complex with LUF6283 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 5-butyl-1~{H}-pyrazole-3-carboxylic acid, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ... Authors: Suzuki, S, Nishikawa, K, Suzuki, H, Fujiyoshi, Y. Deposit date: 2023-02-22 Release date: 2023-08-30 Last modified: 2023-12-06 Method: ELECTRON MICROSCOPY (3.06 Å) Cite: Structural basis of hydroxycarboxylic acid receptor signaling mechanisms through ligand binding. Nat Commun, 14, 2023
8IHG	Crystal structure of aminophenol dioxygenase from Pseudomonas species AP-3 Descriptor: 2-AMINOPHENOL, 2-aminophenol 1,6-dioxygenase alpha subunit, 2-aminophenol 1,6-dioxygenase beta subunit, ... Authors: Shi, Q.L, Su, D. Deposit date: 2023-02-22 Release date: 2024-02-28 Method: X-RAY DIFFRACTION (2.858 Å) Cite: Crystal structure of aminophenol dioxygenase from Pseudomonas species AP-3 To Be Published
8IHF	Cryo-EM structure of HCA2-Gi complex with MK6892 Descriptor: 2-[[2,2-dimethyl-3-[3-(5-oxidanylpyridin-2-yl)-1,2,4-oxadiazol-5-yl]propanoyl]amino]cyclohexene-1-carboxylic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ... Authors: Suzuki, S, Nishikawa, K, Suzuki, H, Fujiyoshi, Y. Deposit date: 2023-02-22 Release date: 2023-08-30 Last modified: 2023-12-06 Method: ELECTRON MICROSCOPY (2.97 Å) Cite: Structural basis of hydroxycarboxylic acid receptor signaling mechanisms through ligand binding. Nat Commun, 14, 2023
8IHB	Cryo-EM structure of HCA2-Gi complex with GSK256073 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 8-chloranyl-3-pentyl-7H-purine-2,6-dione, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ... Authors: Suzuki, S, Nishikawa, K, Suzuki, H, Fujiyoshi, Y. Deposit date: 2023-02-22 Release date: 2023-09-13 Last modified: 2023-12-06 Method: ELECTRON MICROSCOPY (2.85 Å) Cite: Structural basis of hydroxycarboxylic acid receptor signaling mechanisms through ligand binding. Nat Commun, 14, 2023
8IH8	anti-sigmaF factor and Anti-sigmaF factor antagonist complex(usfx-RsfB) Descriptor: Anti-sigma-F factor RsbW, Anti-sigma-F factor antagonist RsfB, GLYCEROL Authors: Chen, Y.J, Su, D. Deposit date: 2023-02-22 Release date: 2024-02-28 Method: X-RAY DIFFRACTION (2 Å) Cite: High resolutions crystal structure of anti-sigmaF factor and Anti-sigmaF factor antagonist complex(usfx-RsfB) To Be Published
8IH6	Crystal structure of decarboxylase-hydratase complex from Pseudomonas species AP-3 Descriptor: 2-oxopent-4-enoate hydratase, 4-oxalocrotonate decarboxylase, GLYCEROL Authors: Shi, Q.L, Su, D. Deposit date: 2023-02-22 Release date: 2024-02-28 Method: X-RAY DIFFRACTION (2.519 Å) Cite: Crystal structure of decarboxylase-hydratase complex from Pseudomonas species AP-3 To Be Published
8IH5	The cryo-EM structure of OsCyc1 that complexed with GGPP Descriptor: GERANYLGERANYL DIPHOSPHATE, Syn-copalyl diphosphate synthase, chloroplastic Authors: Ma, X.L, Xu, H.F, Jiang, T. Deposit date: 2023-02-22 Release date: 2023-12-06 Method: ELECTRON MICROSCOPY (4 Å) Cite: Structural and functional investigations of syn-copalyl diphosphate synthase from Oryza sativa. Commun Chem, 6, 2023
8IH1	Room temperature structure of GH11 from Thermoanaerobacterium saccharolyticum by serial crystallography Descriptor: ACETATE ION, Endo-1,4-beta-xylanase Authors: Nam, K.H. Deposit date: 2023-02-22 Release date: 2023-11-22 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Characterization and structural analysis of the endo-1,4-beta-xylanase GH11 from the hemicellulose-degrading Thermoanaerobacterium saccharolyticum useful for lignocellulose saccharification. Sci Rep, 13, 2023

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